BP915478
Clone id YMU001_000072_A12
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AACTGGAAGAATTCGCGGCCGCAGGAATGTTTCTATAAGTGCATCATGTTCTAATTGCAT
GGCAGCCCTCCAATTCTCAAAATTTTGTGCTTCATCAAAAGATAGAGGTTTCTCAACATC
ACATAAACTAGAAACAGCCAAAGCATAGCAGCGTAATGCATAAGATGCATGGCGAGAACC
TGAACAAGTACGACTAGACAAAGGTGCATCCAATTTACTATCACACAAGTATGCACCAAC
CATTTTGGCATACTTTTAGCCAGCTCATTCTCAACCCTTTCCTCATCAAGTATATCATGT
ACATCTGCATCAAAAATTGGCTGATCTGTAATATTTTCAGAAACCCCCCCCATAGGCTTT
ACGTTTGCCTCGTTGGAATTTACATTTGAACTTCCACCATTGAAAAGAGGCAATAAACTG
TCATAAATTTCCTCTCAACTTACATTATTGTCTCTAGTACATGACAGCAAGGGCTGAAGA
GAATCTTCCACAAACACAACATCCCGTGAAACCAAG
■■Homology search results ■■ -
sp_hit_id Q128K2
Definition sp|Q128K2|DNAK_POLSJ Chaperone protein dnaK OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
Align length 49
Score (bit) 32.3
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915478|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_A12.
(488 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q128K2|DNAK_POLSJ Chaperone protein dnaK OS=Polaromonas sp. (... 32 1.2
sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion a... 32 1.5
sp|A1UUC3|DNAK_BARBK Chaperone protein dnaK OS=Bartonella bacill... 31 3.4
sp|A1B4E9|DNAK_PARDP Chaperone protein dnaK OS=Paracoccus denitr... 30 5.8
sp|Q86KL1|BRE1_DICDI Probable E3 ubiquitin-protein ligase bre1 O... 30 5.8
sp|Q54I36|KYK3_DICDI Dual specificity protein kinase dpyk3 OS=Di... 30 7.6
sp|Q6S003|KIF8_DICDI Kinesin-related protein 8 OS=Dictyostelium ... 29 9.9

>sp|Q128K2|DNAK_POLSJ Chaperone protein dnaK OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=dnaK PE=2 SV=1
Length = 647

Score = 32.3 bits (72), Expect = 1.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -2

Query: 346 NEANVKPMGGVSENITDQPIFDADVHDILDEERVENELAKSMPKWLVHT 200
N+ +K G+SE Q + DA++H D+++VE AK+ + +VH+
Sbjct: 498 NKITIKANSGLSEAEIQQMVKDAELHSADDKKKVEFVQAKNNAEAMVHS 546


>sp|Q8V5E0|POL1_BRAV RNA1 polyprotein OS=Blackcurrant reversion
association virus PE=3 SV=1
Length = 2094

Score = 32.0 bits (71), Expect = 1.5
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +1

Query: 13 ASCSNCMAALQFSKFCASSKDRGFSTSHKLETAKA*QRNA*DAWREPEQVRLDKGASNLL 192
A+C +A+L C+ S R T+H A A +++A +R Q+R DK AS L
Sbjct: 125 AACKRILASLDADLPCSRSSRRAIVTAHYAGVATAARKSA--LFR---QMRADKRASRAL 179

Query: 193 SHKYAPTILA 222
+ P +LA
Sbjct: 180 AAAMQPLVLA 189


>sp|A1UUC3|DNAK_BARBK Chaperone protein dnaK OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=dnaK PE=2
SV=1
Length = 631

Score = 30.8 bits (68), Expect = 3.4
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = -2

Query: 346 NEANVKPMGGVSENITDQPIFDADVHDILDEERVENELAKSMPKWLVHT 200
++ ++ GG+S+ + + DA+ H D++R EN AK+ + L+H+
Sbjct: 492 HQIRIQASGGLSDADIENMVKDAESHAAEDKKRRENVEAKNQAEALIHS 540


>sp|A1B4E9|DNAK_PARDP Chaperone protein dnaK OS=Paracoccus
denitrificans (strain Pd 1222) GN=dnaK PE=2 SV=1
Length = 638

Score = 30.0 bits (66), Expect = 5.8
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -2

Query: 334 VKPMGGVSENITDQPIFDADVHDILDEERVENELAKSMPKWLVHT 200
++ GG+S++ D+ + DA+ + D++R E AK+ + L+HT
Sbjct: 497 IQASGGLSDDEIDRMVKDAEANAEADKQRKELVEAKNQAESLIHT 541


>sp|Q86KL1|BRE1_DICDI Probable E3 ubiquitin-protein ligase bre1
OS=Dictyostelium discoideum GN=bre1 PE=3 SV=1
Length = 1080

Score = 30.0 bits (66), Expect = 5.8
Identities = 18/86 (20%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = -2

Query: 478 RDVVFVEDSLQPLLSCTRDNNVS*EEIYDSLLPLFNGGSSNVNSNEANVKPMGGVSENIT 299
++++ +E S + +++ +NN + +++ + + NG + N N+NE + ++ N
Sbjct: 686 KEMIDIEKSTENIINNNNNNNTNEQKLNEINKNIENGNNENNNNNENTINNENTINNNNN 745

Query: 298 ---DQPIFDADVHDILDEERVENELA 230
D+ IF+ + L+E +++ EL+
Sbjct: 746 ENKDKIIFNLE----LNESKLKLELS 767


>sp|Q54I36|KYK3_DICDI Dual specificity protein kinase dpyk3
OS=Dictyostelium discoideum GN=pkyA PE=1 SV=1
Length = 1338

Score = 29.6 bits (65), Expect = 7.6
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Frame = -2

Query: 448 QPLLSCTRDNNVS*EEIYDS----------LLPLFNGGSSNVNSNEANVKPMGGVSENIT 299
Q LL+C+ +NN + S + L N G++NVNSN N + ++N
Sbjct: 268 QSLLNCSLNNNNNNNNSISSPSSSINNSGNNINLNNSGNNNVNSNN-NTNIINNSNDNFI 326

Query: 298 DQPIFD 281
QP+F+
Sbjct: 327 SQPLFN 332


>sp|Q6S003|KIF8_DICDI Kinesin-related protein 8 OS=Dictyostelium
discoideum GN=kif8 PE=2 SV=1
Length = 1873

Score = 29.3 bits (64), Expect = 9.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2

Query: 406 EEIYDSLLPLFNGGSSNVNSNEANVKPMGGVSENITDQPIFDADVHDI 263
+++ S PL N +N N+N N P+ +S++ D +FD D+ D+
Sbjct: 1338 QQVPKSFAPLNN---TNNNNNNNNSSPLLLISDDKLDHSVFDKDLLDV 1382


tr_hit_id Q6SGZ9
Definition tr|Q6SGZ9|Q6SGZ9_9BACT Penicillin G acylase, putative OS=uncultured marine bacterium 443
Align length 42
Score (bit) 37.0
E-value 0.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915478|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_A12.
(488 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6SGZ9|Q6SGZ9_9BACT Penicillin G acylase, putative OS=uncultu... 37 0.50
tr|Q01MW9|Q01MW9_ORYSA OSIGBa0132G14.4 protein OS=Oryza sativa G... 37 0.65
tr|A0LPC6|A0LPC6_SYNFM Membrane protein, putative OS=Syntrophoba... 36 1.1
tr|Q9AY40|Q9AY40_ORYSA Putative gag-pol polyprotein OS=Oryza sat... 35 1.9
tr|Q8H8D2|Q8H8D2_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 35 1.9
tr|Q7XQG8|Q7XQG8_ORYSJ OJ000114_01.9 protein OS=Oryza sativa sub... 35 1.9
tr|Q7XM06|Q7XM06_ORYSJ OSJNBa0086O06.3 protein OS=Oryza sativa s... 35 1.9
tr|Q7X8G8|Q7X8G8_ORYSA OSJNBb0016D16.22 protein OS=Oryza sativa ... 35 1.9
tr|Q7X6B4|Q7X6B4_ORYSA OSJNBa0079F16.1 protein (OSJNBa0009K15.25... 35 1.9
tr|Q53LP5|Q53LP5_ORYSJ Os11g0199800 protein OS=Oryza sativa subs... 35 1.9
tr|Q2QW16|Q2QW16_ORYSJ Retrotransposon protein, putative, unclas... 35 1.9
tr|Q0JNP3|Q0JNP3_ORYSJ Os01g0275200 protein OS=Oryza sativa subs... 35 1.9
tr|Q0J6Y6|Q0J6Y6_ORYSJ Os08g0248500 protein OS=Oryza sativa subs... 35 1.9
tr|Q0DEJ1|Q0DEJ1_ORYSJ Os06g0149600 protein OS=Oryza sativa subs... 35 1.9
tr|B8AE64|B8AE64_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.9
tr|Q8S7C7|Q8S7C7_ORYSA Putative gag-pol polyprotein OS=Oryza sat... 35 2.5
tr|Q7XWZ9|Q7XWZ9_ORYSA OSJNBa0079F16.4 protein OS=Oryza sativa G... 35 2.5
tr|Q7XC17|Q7XC17_ORYSJ Retrotransposon protein, putative, Ty1-co... 35 2.5
tr|Q2QWI2|Q2QWI2_ORYSJ Retrotransposon protein, putative, unclas... 35 2.5
tr|Q2QMT8|Q2QMT8_ORYSJ Retrotransposon protein, putative, Ty1-co... 35 2.5
tr|A3TJB9|A3TJB9_9MICO Putative uncharacterized protein OS=Janib... 34 4.2
tr|B4P5N6|B4P5N6_DROYA GE13471 OS=Drosophila yakuba GN=GE13471 P... 34 4.2
tr|B7SVE1|B7SVE1_9VIRU GrBNV_gp37-like protein OS=Oryctes rhinoc... 33 5.5
tr|Q1QPN9|Q1QPN9_NITHX ABC transporter related OS=Nitrobacter ha... 33 5.5
tr|Q8GZY7|Q8GZY7_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 33 5.5
tr|Q7XM33|Q7XM33_ORYSJ OSJNBb0022P19.9 protein (OSJNBa0083I11.5 ... 33 5.5
tr|Q0DSV7|Q0DSV7_ORYSJ Os03g0285000 protein OS=Oryza sativa subs... 33 5.5
tr|B8CC12|B8CC12_THAPS Formyltetrahydrofolate deformylase (Fragm... 33 5.5
tr|Q9FWC8|Q9FWC8_ORYSJ Putative uncharacterized protein OSJNBb00... 33 7.2
tr|Q8T9M3|Q8T9M3_9TRYP RHS1 OS=Trypanosoma brucei GN=RHS1 PE=4 SV=1 33 7.2

>tr|Q6SGZ9|Q6SGZ9_9BACT Penicillin G acylase, putative OS=uncultured
marine bacterium 443 GN=MBMO_EBAC000-65D02.14 PE=4 SV=1
Length = 746

Score = 37.0 bits (84), Expect = 0.50
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = -1

Query: 143 HASYALRCYALAVSSLCDVEKPLSFDEAQNFENWRAAMQLEH 18
H YA+R YA + + VE+ L+ ++A+NFE WRAA+ L H
Sbjct: 378 HGVYAIR-YA-GIDEMKQVEQWLAMNKAKNFEQWRAAVALNH 417


>tr|Q01MW9|Q01MW9_ORYSA OSIGBa0132G14.4 protein OS=Oryza sativa
GN=OSIGBa0132G14.4 PE=4 SV=1
Length = 1085

Score = 36.6 bits (83), Expect = 0.65
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = -1

Query: 89 VEKPLSFDEAQNFENWRAAMQLEHDALIE 3
+E+P++ EA+++ WRAAMQ E D++IE
Sbjct: 674 LEEPVALKEAESYPQWRAAMQAEMDSIIE 702


>tr|A0LPC6|A0LPC6_SYNFM Membrane protein, putative
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=Sfum_3608 PE=4 SV=1
Length = 470

Score = 35.8 bits (81), Expect = 1.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2

Query: 179 HPIYYHTSMHQPFWHTFSQLILNPFLIKYIMYICIKNWLICNIFRNPPHRL 331
+P Y TS+ P+W F+ + F + +IM + WL+ I+ P +L
Sbjct: 209 YPWQYFTSIAPPYWEKFANTVSGNFHVAWIMCCTVTVWLVETIWERFPFKL 259


>tr|Q9AY40|Q9AY40_ORYSA Putative gag-pol polyprotein OS=Oryza sativa
GN=OSJNBa0027P10.24 PE=4 SV=1
Length = 1611

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 1091 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1121


>tr|Q8H8D2|Q8H8D2_ORYSJ Putative gag-pol polyprotein OS=Oryza sativa
subsp. japonica GN=OJ1006F06.13 PE=4 SV=1
Length = 1586

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 1081 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1111


>tr|Q7XQG8|Q7XQG8_ORYSJ OJ000114_01.9 protein OS=Oryza sativa subsp.
japonica GN=OJ000114_01.9 PE=4 SV=1
Length = 1601

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 1081 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1111


>tr|Q7XM06|Q7XM06_ORYSJ OSJNBa0086O06.3 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0086O06.3 PE=4 SV=2
Length = 1498

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 978 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1008


>tr|Q7X8G8|Q7X8G8_ORYSA OSJNBb0016D16.22 protein OS=Oryza sativa
GN=OSJNBb0016D16.22 PE=4 SV=1
Length = 1498

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 978 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1008


>tr|Q7X6B4|Q7X6B4_ORYSA OSJNBa0079F16.1 protein (OSJNBa0009K15.25
protein) OS=Oryza sativa GN=OSJNBa0079F16.1 PE=4 SV=1
Length = 1592

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 1152 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1182


>tr|Q53LP5|Q53LP5_ORYSJ Os11g0199800 protein OS=Oryza sativa subsp.
japonica GN=Os11g0199800 PE=4 SV=1
Length = 1523

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1

Query: 95 CDVEKPLSFDEAQNFENWRAAMQLEHDALIE 3
CD +P SF EA+ WRAAMQ E DA+ E
Sbjct: 1061 CDDGEPRSFAEAEKHAAWRAAMQSEMDAVQE 1091