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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915487
Clone id YMU001_000072_C01
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAATCCTTGACCTTGACCATTCCACTGACTCATGGTCCTTTTGCGAAAATGCATGAGTT
CCATCTTTTGCATTTGAGAACAGCCAGTCCCTCCCAGCATTTCTCCAAAACCTTGCAAAC
CTCCTGGCAAACTCCCCTACTCTTGCTAGCCATGTTGCTCCATATAATGTCCAGCTATCC
CACAGCTGCAAAAGAGCTGCCTGCCTCTCAACGGCACTGTACAAAGAGCTTTCAGCTACT
GCTCTGTCATTTGATGCACCATCTTCAACGCTCTCCCTTCCTTTGCTGTTCCAAGGGCTT
GATAACAGTCAATAGAACCAAGCTTTTCCTGTAGGGACCACTCCACTGGAGGAGGCTAAA
GATGCAGATTGTCCACTGGCATAAGTGTCATCCAGAGATTGCCGGAATGATTTTTGAGAC
CATAATCCTTGTCCAACCATCTTTATTTGCAGAAGCTCAGCTTCAGCCACATGATCGTGA
GACAACTCACTTGCACAACCAGCCTGAGAGACAAAGTTGACATGCATCA
■■Homology search results ■■ -
sp_hit_id Q876F4
Definition sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1 OS=Saccharomyces bayanus
Align length 70
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915487|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C01.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1 OS=Sacch...    32   1.9  
sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis ...    30   5.5  
sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=2      30   7.2  
sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xeno...    30   9.4  
sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xeno...    30   9.4  

>sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1
            OS=Saccharomyces bayanus GN=SEC241 PE=3 SV=1
          Length = 885

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
 Frame = -3

Query: 338  VPTGKAWFY*LLSSPWNSKGRESVEDGASNDRAVAESSLYS------------AVERQAA 195
            VP GK+    L+ SP+N + R  +     N+  +   SLY+              ER+ A
Sbjct: 792  VPVGKSELPVLIDSPFNVRLRNIISKIRENNDTITFQSLYTIRGPSINEPANLTAEREMA 851

Query: 194  LLQLWDSWTL 165
             L+LW S TL
Sbjct: 852  SLRLWVSSTL 861


>sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis
            GN=gli4 PE=2 SV=1
          Length = 1361

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 181  HSCKRAACLSTALYKELSATALSFDAPSSTLSLPLLFQGLDNSQ*NQAFPVGTTPLEEAK 360
            HS   +  LS  L +  S T+     P ++L+LP +  G++N        + TT  EE+K
Sbjct: 1296 HSSLMSGTLSPGLLQSFSQTSSRLTTPRNSLTLPSIPAGINNMAIGDMSSMLTTLAEESK 1355


>sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=2
          Length = 4289

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 433  DKDYGLKNHSGNLWMTLMPVDNLHL*PPPVEWSLQEKLGSIDCYQALGTAKEGR 272
            D   G   H GNLW+T    D+LHL      W++ E  G  D +      ++GR
Sbjct: 1240 DPSPGTPPHLGNLWVTDPTPDSLHL-----SWTVPE--GQFDTFMVQYRDRDGR 1286


>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus
           tropicalis GN=march8 PE=2 SV=1
          Length = 264

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 347 WRRLKM--QIVHWHKCHPEIAGMIFETIILVQPSLFAEAQLQPHDRET-THLHNQPE 508
           W+RLK   ++++   C       IFE  ++++P+L ++  L  H  +T +  + +PE
Sbjct: 199 WKRLKAYNRVIYVQNCPETCKKKIFEKSVIIEPNLESKEALGIHHSDTNSSYYTEPE 255


>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus
           laevis GN=march8 PE=2 SV=2
          Length = 264

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 347 WRRLKM--QIVHWHKCHPEIAGMIFETIILVQPSLFAEAQLQPHDRET-THLHNQPE 508
           W+RLK   ++++   C       IFE  ++++P+L ++  L  H  +T +  + +PE
Sbjct: 199 WKRLKAYNRVIYVQNCPETCKKKIFEKSVIIEPNLESKEALGIHHSDTNSSYYTEPE 255
tr_hit_id Q7XAE6
Definition tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked pollen 3.15 protein OS=Petunia integrifolia subsp. inflata
Align length 38
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915487|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C01.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked poll...    52   1e-05
tr|Q7XAE4|Q7XAE4_PETIN S2 self-incompatibility locus-linked poll...    52   1e-05
tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14 ...    51   3e-05
tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein At1g6100...    51   3e-05
tr|Q7XAE5|Q7XAE5_PETIN S1 self-incompatibility locus-linked poll...    50   7e-05
tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subs...    49   2e-04
tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genom...    47   5e-04
tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis...    47   5e-04
tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.0  
tr|A9NW80|A9NW80_PICSI Putative uncharacterized protein OS=Picea...    36   1.4  

>tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked pollen
           3.15 protein OS=Petunia integrifolia subsp. inflata
           GN=S3-3.15 PE=2 SV=1
          Length = 660

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
           MH N+V Q GC+SELS  ++ EA+L+QIK+   GLWSQ
Sbjct: 44  MHANYVQQPGCSSELSRVNIMEAQLIQIKITSAGLWSQ 81


>tr|Q7XAE4|Q7XAE4_PETIN S2 self-incompatibility locus-linked pollen
           3.15 protein (Fragment) OS=Petunia integrifolia subsp.
           inflata GN=S2-3.15 PE=2 SV=1
          Length = 610

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
           MH N+V Q GC+SELS  ++ EA+L+QIK+   GLWSQ
Sbjct: 2   MHANYVQQPGCSSELSRVNIMEAQLIQIKITSAGLWSQ 39


>tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14
           OS=Arabidopsis thaliana GN=T7P1.14 PE=4 SV=1
          Length = 974

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
           MH N+V Q GC+SEL+   +AEAEL+QIK+   GLWS+     + D
Sbjct: 446 MHANYVQQPGCSSELTGVELAEAELMQIKITSAGLWSRNDESTAAD 491


>tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein
           At1g61000/T7P1_14 OS=Arabidopsis thaliana
           GN=At1g61000/T7P1_14 PE=2 SV=1
          Length = 623

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
           MH N+V Q GC+SEL+   +AEAEL+QIK+   GLWS+     + D
Sbjct: 44  MHANYVQQPGCSSELTGVELAEAELMQIKITSAGLWSRNDESTAAD 89


>tr|Q7XAE5|Q7XAE5_PETIN S1 self-incompatibility locus-linked pollen
           3.15 protein (Fragment) OS=Petunia integrifolia subsp.
           inflata GN=S1-3.15 PE=2 SV=1
          Length = 610

 Score = 50.1 bits (118), Expect = 7e-05
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
           MH N+V Q GC+SELS   + EA+L+QIK+   GLWSQ
Sbjct: 2   MHANYVQQPGCSSELSKVTIMEAQLIQIKITRAGLWSQ 39


>tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0065L20.21 PE=4 SV=1
          Length = 664

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
           MH NFV Q GC+SE S     EA+L+QIK++  GLW  K     +D
Sbjct: 48  MHTNFVQQPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 93


>tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12877 PE=4 SV=1
          Length = 713

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
           MH NFV Q GC+SE S     EA+L+QIK++  GLW  K     +D
Sbjct: 48  MHTNFVQQPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 93


>tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026485001
           PE=4 SV=1
          Length = 625

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
           MH N+V Q GC+SE S     EA+L+QIK+   GLWS+
Sbjct: 44  MHANYVQQPGCSSEFSGVETTEAQLIQIKITSAGLWSR 81


>tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036910 PE=4 SV=1
          Length = 673

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
           MH N+V Q GC+SE S     EA+L+QIK+   GLWS+
Sbjct: 44  MHANYVQQPGCSSEFSGVETTEAQLIQIKITSAGLWSR 81


>tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011494 PE=4 SV=1
          Length = 978

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 515 FVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
           F  + GC+SE S     EA+L+QIK++  GLW  K     +D
Sbjct: 77  FHVKPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 118