BP915487
Clone id YMU001_000072_C01
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACAATCCTTGACCTTGACCATTCCACTGACTCATGGTCCTTTTGCGAAAATGCATGAGTT
CCATCTTTTGCATTTGAGAACAGCCAGTCCCTCCCAGCATTTCTCCAAAACCTTGCAAAC
CTCCTGGCAAACTCCCCTACTCTTGCTAGCCATGTTGCTCCATATAATGTCCAGCTATCC
CACAGCTGCAAAAGAGCTGCCTGCCTCTCAACGGCACTGTACAAAGAGCTTTCAGCTACT
GCTCTGTCATTTGATGCACCATCTTCAACGCTCTCCCTTCCTTTGCTGTTCCAAGGGCTT
GATAACAGTCAATAGAACCAAGCTTTTCCTGTAGGGACCACTCCACTGGAGGAGGCTAAA
GATGCAGATTGTCCACTGGCATAAGTGTCATCCAGAGATTGCCGGAATGATTTTTGAGAC
CATAATCCTTGTCCAACCATCTTTATTTGCAGAAGCTCAGCTTCAGCCACATGATCGTGA
GACAACTCACTTGCACAACCAGCCTGAGAGACAAAGTTGACATGCATCA
■■Homology search results ■■ -
sp_hit_id Q876F4
Definition sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1 OS=Saccharomyces bayanus
Align length 70
Score (bit) 32.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915487|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C01.
(529 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1 OS=Sacch... 32 1.9
sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis ... 30 5.5
sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=2 30 7.2
sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xeno... 30 9.4
sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xeno... 30 9.4

>sp|Q876F4|SC241_SACBA Protein transport protein SEC24-1
OS=Saccharomyces bayanus GN=SEC241 PE=3 SV=1
Length = 885

Score = 32.0 bits (71), Expect = 1.9
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Frame = -3

Query: 338 VPTGKAWFY*LLSSPWNSKGRESVEDGASNDRAVAESSLYS------------AVERQAA 195
VP GK+ L+ SP+N + R + N+ + SLY+ ER+ A
Sbjct: 792 VPVGKSELPVLIDSPFNVRLRNIISKIRENNDTITFQSLYTIRGPSINEPANLTAEREMA 851

Query: 194 LLQLWDSWTL 165
L+LW S TL
Sbjct: 852 SLRLWVSSTL 861


>sp|Q91661|GLI4_XENLA Zinc finger protein GLI4 OS=Xenopus laevis
GN=gli4 PE=2 SV=1
Length = 1361

Score = 30.4 bits (67), Expect = 5.5
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1

Query: 181 HSCKRAACLSTALYKELSATALSFDAPSSTLSLPLLFQGLDNSQ*NQAFPVGTTPLEEAK 360
HS + LS L + S T+ P ++L+LP + G++N + TT EE+K
Sbjct: 1296 HSSLMSGTLSPGLLQSFSQTSSRLTTPRNSLTLPSIPAGINNMAIGDMSSMLTTLAEESK 1355


>sp|P22105|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=2
Length = 4289

Score = 30.0 bits (66), Expect = 7.2
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1

Query: 433 DKDYGLKNHSGNLWMTLMPVDNLHL*PPPVEWSLQEKLGSIDCYQALGTAKEGR 272
D G H GNLW+T D+LHL W++ E G D + ++GR
Sbjct: 1240 DPSPGTPPHLGNLWVTDPTPDSLHL-----SWTVPE--GQFDTFMVQYRDRDGR 1286


>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus
tropicalis GN=march8 PE=2 SV=1
Length = 264

Score = 29.6 bits (65), Expect = 9.4
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2

Query: 347 WRRLKM--QIVHWHKCHPEIAGMIFETIILVQPSLFAEAQLQPHDRET-THLHNQPE 508
W+RLK ++++ C IFE ++++P+L ++ L H +T + + +PE
Sbjct: 199 WKRLKAYNRVIYVQNCPETCKKKIFEKSVIIEPNLESKEALGIHHSDTNSSYYTEPE 255


>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus
laevis GN=march8 PE=2 SV=2
Length = 264

Score = 29.6 bits (65), Expect = 9.4
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2

Query: 347 WRRLKM--QIVHWHKCHPEIAGMIFETIILVQPSLFAEAQLQPHDRET-THLHNQPE 508
W+RLK ++++ C IFE ++++P+L ++ L H +T + + +PE
Sbjct: 199 WKRLKAYNRVIYVQNCPETCKKKIFEKSVIIEPNLESKEALGIHHSDTNSSYYTEPE 255


tr_hit_id Q7XAE6
Definition tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked pollen 3.15 protein OS=Petunia integrifolia subsp. inflata
Align length 38
Score (bit) 52.4
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915487|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C01.
(529 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked poll... 52 1e-05
tr|Q7XAE4|Q7XAE4_PETIN S2 self-incompatibility locus-linked poll... 52 1e-05
tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14 ... 51 3e-05
tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein At1g6100... 51 3e-05
tr|Q7XAE5|Q7XAE5_PETIN S1 self-incompatibility locus-linked poll... 50 7e-05
tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subs... 49 2e-04
tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genom... 47 5e-04
tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04
tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza... 36 1.0
tr|A9NW80|A9NW80_PICSI Putative uncharacterized protein OS=Picea... 36 1.4

>tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked pollen
3.15 protein OS=Petunia integrifolia subsp. inflata
GN=S3-3.15 PE=2 SV=1
Length = 660

Score = 52.4 bits (124), Expect = 1e-05
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
MH N+V Q GC+SELS ++ EA+L+QIK+ GLWSQ
Sbjct: 44 MHANYVQQPGCSSELSRVNIMEAQLIQIKITSAGLWSQ 81


>tr|Q7XAE4|Q7XAE4_PETIN S2 self-incompatibility locus-linked pollen
3.15 protein (Fragment) OS=Petunia integrifolia subsp.
inflata GN=S2-3.15 PE=2 SV=1
Length = 610

Score = 52.4 bits (124), Expect = 1e-05
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
MH N+V Q GC+SELS ++ EA+L+QIK+ GLWSQ
Sbjct: 2 MHANYVQQPGCSSELSRVNIMEAQLIQIKITSAGLWSQ 39


>tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14
OS=Arabidopsis thaliana GN=T7P1.14 PE=4 SV=1
Length = 974

Score = 51.2 bits (121), Expect = 3e-05
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
MH N+V Q GC+SEL+ +AEAEL+QIK+ GLWS+ + D
Sbjct: 446 MHANYVQQPGCSSELTGVELAEAELMQIKITSAGLWSRNDESTAAD 491


>tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein
At1g61000/T7P1_14 OS=Arabidopsis thaliana
GN=At1g61000/T7P1_14 PE=2 SV=1
Length = 623

Score = 51.2 bits (121), Expect = 3e-05
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
MH N+V Q GC+SEL+ +AEAEL+QIK+ GLWS+ + D
Sbjct: 44 MHANYVQQPGCSSELTGVELAEAELMQIKITSAGLWSRNDESTAAD 89


>tr|Q7XAE5|Q7XAE5_PETIN S1 self-incompatibility locus-linked pollen
3.15 protein (Fragment) OS=Petunia integrifolia subsp.
inflata GN=S1-3.15 PE=2 SV=1
Length = 610

Score = 50.1 bits (118), Expect = 7e-05
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
MH N+V Q GC+SELS + EA+L+QIK+ GLWSQ
Sbjct: 2 MHANYVQQPGCSSELSKVTIMEAQLIQIKITRAGLWSQ 39


>tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0065L20.21 PE=4 SV=1
Length = 664

Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
MH NFV Q GC+SE S EA+L+QIK++ GLW K +D
Sbjct: 48 MHTNFVQQPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 93


>tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_12877 PE=4 SV=1
Length = 713

Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
MH NFV Q GC+SE S EA+L+QIK++ GLW K +D
Sbjct: 48 MHTNFVQQPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 93


>tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026485001
PE=4 SV=1
Length = 625

Score = 47.4 bits (111), Expect = 5e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
MH N+V Q GC+SE S EA+L+QIK+ GLWS+
Sbjct: 44 MHANYVQQPGCSSEFSGVETTEAQLIQIKITSAGLWSR 81


>tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_036910 PE=4 SV=1
Length = 673

Score = 47.4 bits (111), Expect = 5e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -3

Query: 527 MHVNFVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQ 414
MH N+V Q GC+SE S EA+L+QIK+ GLWS+
Sbjct: 44 MHANYVQQPGCSSEFSGVETTEAQLIQIKITSAGLWSR 81


>tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_011494 PE=4 SV=1
Length = 978

Score = 36.2 bits (82), Expect = 1.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3

Query: 515 FVSQAGCASELSHDHVAEAELLQIKMVGQGLWSQKSFRQSLD 390
F + GC+SE S EA+L+QIK++ GLW K +D
Sbjct: 77 FHVKPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMD 118