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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915494
Clone id YMU001_000072_C09
Library
Length 260
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTGCAACCAAAGGTGGGAAAATAGGAACCGACTGTAAGGAGGACATCAACAGATCTTGC
ATTGCTTCTGTTGATGATGCTGACTATAAGAGTGCAGATATCAAGAATAGATCTAGGGGC
TTTTCTGCCAGCAAGTTCCCACCAGCTGCACATGTGACTATTGCCAAGAAAATTACTAAC
CAATCTGTAGTAACTACTACTCCAGGATCTAGGAACATTAATCCAACTGGACCCGCTGTA
GAAACAGTCGAAGTTGGGAT
■■Homology search results ■■ -
sp_hit_id P21852
Definition sp|P21852|PHNL_DESVM Periplasmic [NiFe] hydrogenase large subunit OS=Desulfovibrio vulgaris (strain Miyazaki)
Align length 79
Score (bit) 33.1
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915494|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C09.
         (260 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21852|PHNL_DESVM Periplasmic [NiFe] hydrogenase large subuni...    33   0.43 
sp|Q1GR67|KATG_SPHAL Catalase-peroxidase OS=Sphingopyxis alasken...    29   6.3  
sp|Q12558|AGLU_ASPOR Alpha-glucosidase OS=Aspergillus oryzae GN=...    29   8.2  

>sp|P21852|PHNL_DESVM Periplasmic [NiFe] hydrogenase large subunit
           OS=Desulfovibrio vulgaris (strain Miyazaki) GN=hydB PE=1
           SV=1
          Length = 567

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -3

Query: 234 GSSWINVPRSWSSSYYRLVSNFLGNSHMC--SWWELAGRKAPRSILDICTLIVSIINRSN 61
           G  ++N PR   S + R+    +GN  +   S W L  R    ++  +   ++       
Sbjct: 471 GVGFVNAPRGGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNNVSPVEASLIGTPVADA 530

Query: 60  ARSVDVLLTVGSYFPTFGC 4
            R V++L TV S+ P   C
Sbjct: 531 KRPVEILRTVHSFDPCIAC 549


>sp|Q1GR67|KATG_SPHAL Catalase-peroxidase OS=Sphingopyxis alaskensis
           GN=katG PE=3 SV=1
          Length = 731

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 228 SWINVPRSWSSSYYRLVSNF 169
           +W N PR W+ +Y+RL+ ++
Sbjct: 320 AWTNTPREWTENYFRLLFDY 339


>sp|Q12558|AGLU_ASPOR Alpha-glucosidase OS=Aspergillus oryzae
           GN=agdA PE=2 SV=1
          Length = 985

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 10/40 (25%)
 Frame = +1

Query: 43  DINRSCIASVDDAD----------YKSADIKNRSRGFSAS 132
           D+  + +A++DD            YK++D+K+ S+GF+AS
Sbjct: 44  DVGANLVANIDDPQAVNAQSVCPGYKASDVKHSSQGFTAS 83
tr_hit_id A6Y2N1
Definition tr|A6Y2N1|A6Y2N1_VIBCH RTX protein (Fragment) OS=Vibrio cholerae RC385
Align length 79
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915494|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C09.
         (260 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6Y2N1|A6Y2N1_VIBCH RTX protein (Fragment) OS=Vibrio cholerae...    37   0.49 
tr|A2P810|A2P810_VIBCH RTX protein OS=Vibrio cholerae 1587 GN=A5...    37   0.49 
tr|Q13C47|Q13C47_RHOPS O-acetylhomoserine/O-acetylserine sulfhyd...    33   5.4  
tr|Q2SE12|Q2SE12_HAHCH O-acetylhomoserine sulfhydrylase OS=Hahel...    33   9.3  
tr|A9IU08|A9IU08_BART1 Glycerol-3-phosphate dehydrogenase OS=Bar...    33   9.3  

>tr|A6Y2N1|A6Y2N1_VIBCH RTX protein (Fragment) OS=Vibrio cholerae
            RC385 GN=VCRC385_1183 PE=4 SV=1
          Length = 1400

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25   GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
            G+D   D +++  A+V   D   ++     + G+S    PPAA +T+   IT   V+  T
Sbjct: 1067 GSDLVADADKTIDATVTTTDAAGNSTTATDTEGYSVDVTPPAATITLDANITADDVINAT 1126

Query: 202  PGSRNINPTGPAVETVEVG 258
               + I  TG     V+VG
Sbjct: 1127 EAGQQIPVTGSVGGDVKVG 1145



 Score = 37.0 bits (84), Expect = 0.49
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25   GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
            G+D   D +++  A+V   D   ++     + G+S    PPAA +T+   IT   V+  T
Sbjct: 1173 GSDLVADADKTIDATVTTTDAAGNSTTATDTEGYSVDVTPPAATITLDANITADDVINAT 1232

Query: 202  PGSRNINPTGPAVETVEVG 258
               + I  TG     V+VG
Sbjct: 1233 EAGQQIPVTGSVGGDVKVG 1251



 Score = 37.0 bits (84), Expect = 0.49
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25   GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
            G+D   D +++  A+V   D   ++     + G+S    PPAA +T+   IT   V+  T
Sbjct: 1279 GSDLVADADKTIDATVTTTDAAGNSTTATDTEGYSVDVTPPAATITLDANITADDVINAT 1338

Query: 202  PGSRNINPTGPAVETVEVG 258
               + I  TG     V+VG
Sbjct: 1339 EAGQQIPVTGSVGGDVKVG 1357


>tr|A2P810|A2P810_VIBCH RTX protein OS=Vibrio cholerae 1587
           GN=A55_1738 PE=4 SV=1
          Length = 2093

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25  GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
           G+D   D +++  ASV   D   ++     + G+S    PPAA +T+   IT   ++  T
Sbjct: 165 GSDLAVDADQTIDASVTTTDXAGNSTTATDTEGYSVDVTPPAATITLDANITADDMINAT 224

Query: 202 PGSRNINPTGPAVETVEVG 258
              + I  TG     V+VG
Sbjct: 225 EAGQQIPVTGSVGGDVKVG 243



 Score = 36.6 bits (83), Expect = 0.64
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25  GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
           G+D   D +++  A V   D   ++     + G+S    PPAA +T+   IT   V+  T
Sbjct: 377 GSDLVADADKTIDAKVTTTDAAGNSTTATDTEGYSVDVTPPAATITLDANITADDVINAT 436

Query: 202 PGSRNINPTGPAVETVEVG 258
              + I  TG     V+VG
Sbjct: 437 EAGQQIPVTGSVGGDVKVG 455



 Score = 36.2 bits (82), Expect = 0.84
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25  GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
           G+D   D +++  A V   D   ++     + G+S    PPAA +T+   IT   V+  T
Sbjct: 271 GSDLVADADKTIDAXVTTTDAAGNSTTATDTEGYSVDVTPPAATITLDANITADDVINAT 330

Query: 202 PGSRNINPTGPAVETVEVG 258
              + I  TG     V+VG
Sbjct: 331 EAGQQIPVTGSVGGDVKVG 349



 Score = 36.2 bits (82), Expect = 0.84
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25  GTDCKEDINRSCIASVDDADYK-SADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTT 201
           G+D   D +++  A V   D   ++     + G+S    PPAA +T+   IT   V+  T
Sbjct: 483 GSDLVADADKTIDAXVTTTDAAGNSTTATDTEGYSVDVTPPAATITLDANITADDVINAT 542

Query: 202 PGSRNINPTGPAVETVEVG 258
              + I  TG     V+VG
Sbjct: 543 EAGQQIPVTGSVGGDVKVG 561


>tr|Q13C47|Q13C47_RHOPS O-acetylhomoserine/O-acetylserine
           sulfhydrylase OS=Rhodopseudomonas palustris (strain
           BisB5) GN=RPD_1104 PE=3 SV=1
          Length = 434

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 228 SWINVPRSWSSSYYRLVSNFLGN--SHMCSWWELAGRKAPRSILDICTLIVSIINRSNAR 55
           +W+N      S YY LV  +LG   S + ++    G +A +S  D   L+  ++N  +A+
Sbjct: 312 AWVNYTGFPDSPYYELVQKYLGGQASSLFTFGIKGGLEAGKSFYDALKLVTRLVNIGDAK 371

Query: 54  SV 49
           S+
Sbjct: 372 SL 373


>tr|Q2SE12|Q2SE12_HAHCH O-acetylhomoserine sulfhydrylase OS=Hahella
           chejuensis (strain KCTC 2396) GN=HCH_04407 PE=3 SV=1
          Length = 424

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 228 SWINVPRSWSSSYYRLVSNFLGN--SHMCSWWELAGRKAPRSILDICTLIVSIINRSNAR 55
           SW+  P   SS YY L   ++G   S + S+    G++A    +D   ++  ++N  +A+
Sbjct: 311 SWVKYPGLESSPYYELAQKYMGGKPSSVLSFGIKGGKEAGGRFIDALQMVKRLVNIGDAK 370

Query: 54  SV 49
           ++
Sbjct: 371 TL 372


>tr|A9IU08|A9IU08_BART1 Glycerol-3-phosphate dehydrogenase
           OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
           GN=glpD PE=4 SV=1
          Length = 509

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +1

Query: 28  TDCKEDINRSCIASVDDADYKSADIKNRSRGFSASKFPPAAHVTIAKKITNQSVVTTTPG 207
           +D + D  R  IA+  DA+   ADIK R+   S  K      + + +K+T +    T   
Sbjct: 153 SDARVDDARLVIANARDAEKWGADIKVRTEVLSLKKEDEKWRIVLQEKLTGKEYSVT--A 210

Query: 208 SRNINPTGPAVETV 249
           S   N TGP ++ V
Sbjct: 211 SYVANMTGPWIDHV 224