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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915495
Clone id YMU001_000072_C10
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTACTTGCATCCAAGTAGATAAATTTACAATCCTTGCTATGAGTGTGCTTGGCTACTCA
TTACATTGTCAGTCGGCAGACAGAGAGAGGCACACTTCATCCGAATATAAGACCGTAATC
CTTGCCTGCAATGTGGAATGCCCAATTGCACTCGCAATGAATTGCATTCCAACTCATCCA
AAAGAGTCTTATTAGAAATGTACAATCTCCATCAGAGCCAAAATGCATCACATTGTGCCA
AAATAGGTGATGCACCAAAAATCAGAGGCCCGGCTCTAGACTTCCGAACCTGTACAACAG
CATACATCTACCAAGAGAAGTATGGGAAAACATCTTCACCTAAAACCCCCACTGTCCATA
ACTATCTTTGTTCATGAATAAGGACGTCAACACTGCAAGAGCACCTATAACAATCATGAT
ATTCAGAAAGTAATTCGTTTTTAAAGGCTGATCTGGGCTCCCCCCAAATGCCAGATATTC
■■Homology search results ■■ -
sp_hit_id Q69SV0
Definition sp|Q69SV0|APX8_ORYSJ Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica
Align length 34
Score (bit) 55.8
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915495|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C10.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q69SV0|APX8_ORYSJ Probable L-ascorbate peroxidase 8, chloropl...    56   1e-07
sp|Q42593|APXT_ARATH L-ascorbate peroxidase T, chloroplastic OS=...    54   3e-07
sp|P40809|RG84C_DROME GTPase-activating protein RacGAP84C OS=Dro...    32   1.5  
sp|Q9MUK8|NU5C_MESVI NAD(P)H-quinone oxidoreductase subunit 5, c...    30   4.4  
sp|Q91ZY8|TRIM9_RAT Tripartite motif-containing protein 9 OS=Rat...    30   5.6  
sp|Q8C7M3|TRIM9_MOUSE Tripartite motif-containing protein 9 OS=M...    30   5.6  
sp|Q9C026|TRIM9_HUMAN Tripartite motif-containing protein 9 OS=H...    30   5.6  
sp|Q29RQ5|TRIM9_BOVIN Tripartite motif-containing protein 9 OS=B...    30   5.6  
sp|O15078|CE290_HUMAN Centrosomal protein of 290 kDa OS=Homo sap...    30   7.4  
sp|Q8IDG7|YPF01_PLAF7 Uncharacterized protein PF13_0277 OS=Plasm...    29   9.6  
sp|Q5F408|SYCC_CHICK Cysteinyl-tRNA synthetase, cytoplasmic OS=G...    29   9.6  
sp|Q6A078|CE290_MOUSE Centrosomal protein of 290 kDa OS=Mus musc...    29   9.6  
sp|Q19V60|NU5C_CHLAT NAD(P)H-quinone oxidoreductase subunit 5, c...    29   9.8  

>sp|Q69SV0|APX8_ORYSJ Probable L-ascorbate peroxidase 8,
           chloroplastic OS=Oryza sativa subsp. japonica GN=APX8
           PE=2 SV=2
          Length = 478

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSL 379
           EY  FGGSPD+PL++NYFLNIM++IG LA LTSL
Sbjct: 442 EYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSL 475


>sp|Q42593|APXT_ARATH L-ascorbate peroxidase T, chloroplastic
           OS=Arabidopsis thaliana GN=APXT PE=2 SV=2
          Length = 426

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMNKDSYGQWGF 343
           EY A GGSPD+PL TNYFLNI+I IG L +L++LF   ++    GF
Sbjct: 381 EYEAIGGSPDKPLPTNYFLNIIIAIGVLVLLSTLFGGNNNSDFSGF 426


>sp|P40809|RG84C_DROME GTPase-activating protein RacGAP84C
           OS=Drosophila melanogaster GN=RacGAP84C PE=2 SV=1
          Length = 384

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +1

Query: 49  LGYSLHCQSADRERHTSSEYKTVILACNVECPIALAMNCIPTHPKESY*KCTISIRAKMH 228
           +G  +HC+   R    S   +   L C++ C   L +NCIP     +   C      ++ 
Sbjct: 98  VGNCVHCRKRIRFAMASLRCRACPLRCHIGCCRQLTVNCIPQPQIGTKRGCLSDYAPRVA 157

Query: 229 HIVPK*VMH--QKSEARL*TSEPVQQHTSTK 315
            +VP  ++H   + EAR    E + + +ST+
Sbjct: 158 PMVPALIVHCVTEIEARGLQQEGLYRVSSTR 188


>sp|Q9MUK8|NU5C_MESVI NAD(P)H-quinone oxidoreductase subunit 5,
           chloroplastic OS=Mesostigma viride GN=ndhF PE=3 SV=1
          Length = 652

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
 Frame = -1

Query: 444 LKTNYFLN-----IMIVIGALAVLTSLFMNKDSYGQWGF*VKMFSHTSLGRCMLLYRFGS 280
           L+  YF++     +++++  +A+L  ++ +       G+ V+ F++ SL    +L     
Sbjct: 83  LEIGYFVDPLTAVMLVIVTTVAILVLIYTDGYMSYDEGY-VRFFAYLSLFTTSMLGLV-- 139

Query: 279 LEPGL*FLVHHLFWHNVMHFGSDGDCTFLIRLFWMSWNAIHCECNWAFHIAGK--DYGLI 106
           L P L  L  ++FW  V      G C++L+  FW +  A    C  AF +  +  D+GL+
Sbjct: 140 LSPNL--LQIYVFWELV------GMCSYLLIGFWFTRPAAADACQKAF-VTNRVGDFGLL 190

Query: 105 FG 100
            G
Sbjct: 191 LG 192


>sp|Q91ZY8|TRIM9_RAT Tripartite motif-containing protein 9 OS=Rattus
           norvegicus GN=Trim9 PE=1 SV=1
          Length = 710

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 123 CLQCGMP---NCTRNELHSNSSKRVLLEMYNLHQSQNASHCAKIGDAPK 260
           C+QC MP    C     HS+   + L  M+ LH+SQ +     + D  K
Sbjct: 241 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAK 289


>sp|Q8C7M3|TRIM9_MOUSE Tripartite motif-containing protein 9 OS=Mus
           musculus GN=Trim9 PE=2 SV=2
          Length = 817

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 123 CLQCGMP---NCTRNELHSNSSKRVLLEMYNLHQSQNASHCAKIGDAPK 260
           C+QC MP    C     HS+   + L  M+ LH+SQ +     + D  K
Sbjct: 241 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAK 289


>sp|Q9C026|TRIM9_HUMAN Tripartite motif-containing protein 9 OS=Homo
           sapiens GN=TRIM9 PE=1 SV=1
          Length = 710

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 123 CLQCGMP---NCTRNELHSNSSKRVLLEMYNLHQSQNASHCAKIGDAPK 260
           C+QC MP    C     HS+   + L  M+ LH+SQ +     + D  K
Sbjct: 241 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAK 289


>sp|Q29RQ5|TRIM9_BOVIN Tripartite motif-containing protein 9 OS=Bos
           taurus GN=TRIM9 PE=2 SV=1
          Length = 710

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 123 CLQCGMP---NCTRNELHSNSSKRVLLEMYNLHQSQNASHCAKIGDAPK 260
           C+QC MP    C     HS+   + L  M+ LH+SQ +     + D  K
Sbjct: 241 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAK 289


>sp|O15078|CE290_HUMAN Centrosomal protein of 290 kDa OS=Homo sapiens
            GN=CEP290 PE=1 SV=2
          Length = 2479

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 150  TRNELHSNSSKRVLLEMYNLHQSQNASHCAKI 245
            T +++ S S K  +LEM  L++ Q A HC K+
Sbjct: 1048 TNSDIVSISKKITMLEMKELNERQRAEHCQKM 1079


>sp|Q8IDG7|YPF01_PLAF7 Uncharacterized protein PF13_0277 OS=Plasmodium
            falciparum (isolate 3D7) GN=PF13_0277 PE=4 SV=1
          Length = 2068

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 144  NCTRNELHSNSSKRVLLEMYNLHQSQNASHCAKIGDAPKI 263
            NC R+E+ ++  K++ L +    + +    C  + DAP+I
Sbjct: 1390 NCERHEMKNSEIKKIKLNILEKFRKKEIRKCDNMDDAPRI 1429
tr_hit_id Q9XPR6
Definition tr|Q9XPR6|Q9XPR6_TOBAC Thylakoid-bound ascorbate peroxidase OS=Nicotiana tabacum
Align length 37
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915495|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_C10.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XPR6|Q9XPR6_TOBAC Thylakoid-bound ascorbate peroxidase OS=N...    57   5e-07
tr|O04873|O04873_9ROSI Thylakoid-bound ascorbate peroxidase OS=C...    57   5e-07
tr|A7NVF2|A7NVF2_VITVI Chromosome chr18 scaffold_1, whole genome...    57   6e-07
tr|Q0E0G3|Q0E0G3_ORYSJ Os02g0553200 protein OS=Oryza sativa subs...    56   1e-06
tr|B8AJE7|B8AJE7_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A3A7Y3|A3A7Y3_ORYSJ Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|Q7DN73|Q7DN73_SPIOL Thylakoid-bound ascorbate peroxidase OS=S...    55   2e-06
tr|O46921|O46921_SPIOL Thylakoid-bound ascorbate peroxidase OS=S...    55   2e-06
tr|B6TEY2|B6TEY2_MAIZE Thylakoid-bound ascorbate peroxidase APx8...    55   2e-06
tr|B4G232|B4G232_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|A9NXJ7|A9NXJ7_PICSI Putative uncharacterized protein OS=Picea...    55   2e-06
tr|Q56WP7|Q56WP7_ARATH Thylakoid-bound ascorbate peroxidase OS=A...    54   3e-06
tr|P92970|P92970_ARATH Thylakoid-bound ascorbate peroxidase (Fra...    54   3e-06
tr|Q5QHW7|Q5QHW7_VIGUN Chloroplast thylakoid-bound ascorbate per...    54   4e-06
tr|O81333|O81333_MESCR Thylakoid-bound L-ascorbate peroxidase OS...    54   5e-06
tr|Q8GZC1|Q8GZC1_WHEAT Thylakoid-bound ascorbate peroxidase (Fra...    53   9e-06
tr|Q8GZB9|Q8GZB9_WHEAT Putative ascorbate peroxidase (Fragment) ...    53   9e-06
tr|Q3SC88|Q3SC88_SOLLC Thylakoid-bound ascorbate peroxidase 6 (T...    53   9e-06
tr|Q8GZC0|Q8GZC0_WHEAT Thylakoid-bound ascorbate peroxidase (Fra...    52   1e-05
tr|A2IAW9|A2IAW9_WHEAT Thylakoid bound ascorbate peroxidase OS=T...    52   1e-05
tr|Q75UU9|Q75UU9_BRAOL Thylakoid-bound ascorbate peroxidase OS=B...    51   2e-05
tr|Q5J330|Q5J330_WHEAT Thylakoid ascorbate peroxidase (Fragment)...    50   4e-05
tr|Q5J331|Q5J331_WHEAT Thylakoid ascorbate peroxidase OS=Triticu...    49   1e-04
tr|A9U1S4|A9U1S4_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|Q8LSK6|Q8LSK6_SOLLC Ascorbate peroxidase OS=Solanum lycopersi...    35   1.4  
tr|B1KK93|B1KK93_SHEWM 4Fe-4S ferredoxin iron-sulfur binding dom...    35   2.4  
tr|A8GZS4|A8GZS4_SHEPA 4Fe-4S ferredoxin iron-sulfur binding dom...    35   2.4  
tr|Q12I46|Q12I46_SHEDO Sensor protein OS=Shewanella denitrifican...    34   3.1  
tr|B4B4F2|B4B4F2_9CHRO Putative Chase2 sensor protein OS=Cyanoth...    34   4.1  
tr|Q16Y64|Q16Y64_AEDAE Cardioacceleratory peptide receptor OS=Ae...    33   5.4  

>tr|Q9XPR6|Q9XPR6_TOBAC Thylakoid-bound ascorbate peroxidase
           OS=Nicotiana tabacum PE=2 SV=1
          Length = 435

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY  FGGS D+PL TNYFLNIMIVIG LA++TSL  N
Sbjct: 399 EYEGFGGSADKPLPTNYFLNIMIVIGVLAIVTSLLGN 435


>tr|O04873|O04873_9ROSI Thylakoid-bound ascorbate peroxidase
           OS=Cucurbita cv. Kurokawa Amakuri PE=2 SV=1
          Length = 421

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/37 (70%), Positives = 31/37 (83%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY +FGGSPD+PL TNYFLNI++VI  LA+LTSL  N
Sbjct: 385 EYESFGGSPDKPLPTNYFLNIILVIAVLAILTSLLGN 421


>tr|A7NVF2|A7NVF2_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015409001
           PE=4 SV=1
          Length = 421

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 27/37 (72%), Positives = 31/37 (83%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY A GGSPD+PL++NYFLNIMIVI  LA LT+LF N
Sbjct: 385 EYEAVGGSPDKPLQSNYFLNIMIVIAVLAFLTTLFGN 421


>tr|Q0E0G3|Q0E0G3_ORYSJ Os02g0553200 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0553200 PE=4 SV=1
          Length = 478

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSL 379
           EY  FGGSPD+PL++NYFLNIM++IG LA LTSL
Sbjct: 442 EYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSL 475


>tr|B8AJE7|B8AJE7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07630 PE=4 SV=1
          Length = 457

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSL 379
           EY  FGGSPD+PL++NYFLNIM++IG LA LTSL
Sbjct: 421 EYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSL 454


>tr|A3A7Y3|A3A7Y3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006905 PE=4 SV=1
          Length = 401

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSL 379
           EY  FGGSPD+PL++NYFLNIM++IG LA LTSL
Sbjct: 365 EYEGFGGSPDKPLQSNYFLNIMLLIGGLAFLTSL 398


>tr|Q7DN73|Q7DN73_SPIOL Thylakoid-bound ascorbate peroxidase
           OS=Spinacia oleracea PE=2 SV=1
          Length = 415

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY  FGGSP++PL TNYFLNIMIVIG LAVL+ L  N
Sbjct: 379 EYEGFGGSPNKPLPTNYFLNIMIVIGVLAVLSYLAGN 415


>tr|O46921|O46921_SPIOL Thylakoid-bound ascorbate peroxidase
           OS=Spinacia oleracea GN=APX2 PE=4 SV=3
          Length = 415

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY  FGGSP++PL TNYFLNIMIVIG LAVL+ L  N
Sbjct: 379 EYEGFGGSPNKPLPTNYFLNIMIVIGVLAVLSYLAGN 415


>tr|B6TEY2|B6TEY2_MAIZE Thylakoid-bound ascorbate peroxidase APx8
           OS=Zea mays PE=2 SV=1
          Length = 462

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY  FGGSPD+P+++NYFLNIMI+I  LA LTSL  N
Sbjct: 426 EYEGFGGSPDKPMQSNYFLNIMILIAGLAFLTSLLGN 462


>tr|B4G232|B4G232_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 451

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -1

Query: 480 EYLAFGGSPDQPLKTNYFLNIMIVIGALAVLTSLFMN 370
           EY  FGGSPD+P+++NYFLNIMI+I  LA LTSL  N
Sbjct: 415 EYEGFGGSPDKPMQSNYFLNIMILIAGLAFLTSLLGN 451