NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915505
Clone id YMU001_000072_D09
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTGTCAATTGCTCTCAAGCAAGAATTGGGACGGAGGGGAACATGCTGTATGGACAGGGC
CTGCAGAATTTCTTATGTAGTCAGGGATTTCAAAGGGAGGTATCCAACATGCCCCCGGGA
TTTGCTTTGAACAGGAATGCCCAGNGCTTTCAAAAGGACCCATCAAGTATCTCCAGCATG
TTGCTAGAATCCCTAGACTCTAGAGCCAATATTGGTTTTGGGTCTATACCCTGTGGCATT
CACATTGACTCAAATTTGATGCGGCATGGAGAAATTATCAATCTTCCCTCAAATGCTGAT
TCATTATGGTACTTAGGCTCTTAGCCTCTACTTTGGATATTTCTTATGGAGAGTGCCACA
GCACCTTGTATGGTAGCTAGATCAAGTGGCTCATTCATGTAGAAAGTGCAACACACTCAT
GTGCACTTGCTGGTCAGAGACCGGAGTATGCTTTAAGTGCCTGAGCTGTTACGAGCCATC
AAGCTTTGAATCTATGATGCGTTCCACTACAAAACTTGTGCTATGCAATGGGAGTGGCTC
GCTCTCTGGTGTAA
■■Homology search results ■■ -
sp_hit_id Q9GK77
Definition sp|Q9GK77|UPAR_AOTTR Urokinase plasminogen activator surface receptor OS=Aotus trivirgatus
Align length 45
Score (bit) 30.0
E-value 7.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915505|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D09.
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9GK77|UPAR_AOTTR Urokinase plasminogen activator surface rec...    30   7.9  
sp|Q2LQK5|SYL_SYNAS Leucyl-tRNA synthetase OS=Syntrophus aciditr...    30   7.9  

>sp|Q9GK77|UPAR_AOTTR Urokinase plasminogen activator surface
           receptor OS=Aotus trivirgatus GN=PLAUR PE=2 SV=1
          Length = 336

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 392 HSCRKCNTLMCTCWSETGVCFKCLSCYEPSSFESMMRSTTKLVLC 526
           H C   NT++  C      C +    YEP S   M+R      +C
Sbjct: 226 HGCSSENTVLTDCRGPMNQCLEATGIYEPLSESYMVRGCATSSMC 270


>sp|Q2LQK5|SYL_SYNAS Leucyl-tRNA synthetase OS=Syntrophus
           aciditrophicus (strain SB) GN=leuS PE=3 SV=1
          Length = 862

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 338 YFLWRVPQHLVW*LDQVAHSCRKCNTLMCTCWSETGVCFKC 460
           +FLW   + L +      + C +C T++     E G+C++C
Sbjct: 139 FFLWMYEKGLAYKKTSSVNWCPRCQTVLANEQVEAGLCWRC 179
tr_hit_id B6M6Z7
Definition tr|B6M6Z7|B6M6Z7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 58
Score (bit) 34.3
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915505|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D09.
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6M6Z7|B6M6Z7_BRAFL Putative uncharacterized protein OS=Branc...    34   4.6  
tr|Q22XV6|Q22XV6_TETTH Insect antifreeze protein OS=Tetrahymena ...    34   6.0  
tr|B0E9G1|B0E9G1_ENTDI Protein serine/threonine kinase, putative...    33   7.8  
tr|A0E4R7|A0E4R7_PARTE Chromosome undetermined scaffold_78, whol...    33   7.8  
tr|A0CRY6|A0CRY6_PARTE Chromosome undetermined scaffold_254, who...    33   7.8  
tr|A0C7A8|A0C7A8_PARTE Chromosome undetermined scaffold_154, who...    33   7.8  
tr|A3MSY9|A3MSY9_PYRCJ Putative uncharacterized protein OS=Pyrob...    33   7.8  

>tr|B6M6Z7|B6M6Z7_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_78948 PE=4 SV=1
          Length = 620

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +2

Query: 8   IALKQELGRRGTCCMDRACRISYVVRDFKGRYPTCPRDLL*TGMPXAFKRTHQVSPAC 181
           ++L Q   R G C + R CR+   V+D  G  P+C RDLL      A K   +V  AC
Sbjct: 84  VSLLQLASRAGDCGLFRVCRL---VKDANGTIPSCLRDLL------ADKNVLKVGVAC 132


>tr|Q22XV6|Q22XV6_TETTH Insect antifreeze protein OS=Tetrahymena
            thermophila SB210 GN=TTHERM_00357150 PE=4 SV=1
          Length = 8517

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 383  QVAHSCRKCNTLMCTCWSETGVCFKCLSCYEPSSFESMMRSTTKLVLCNGSGS 541
            Q  +SC KCN     C  +T VC  C   Y  +S +S         +C G  S
Sbjct: 6434 QTNYSCLKCNKACSQCIDQTNVCEVCAEGYYKNSDQSCQPCEDFCQICTGINS 6486


>tr|B0E9G1|B0E9G1_ENTDI Protein serine/threonine kinase, putative
           OS=Entamoeba dispar SAW760 GN=EDI_102000 PE=4 SV=1
          Length = 2216

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 389 AHSCRKCNTLMCTCW--SETGVCFKCLSCY 472
           + +C+KC+  +  CW   ETG+C  C S Y
Sbjct: 616 SETCKKCDLKVSNCWECDETGICLSCKSGY 645


>tr|A0E4R7|A0E4R7_PARTE Chromosome undetermined scaffold_78, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00023459001 PE=4 SV=1
          Length = 2913

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 398  CRKCNTLMCTCWSETGVCFKCLSCYEPSSFESMMRSTTKLVLC 526
            C+KCN+L  TC S +    KCLSC+E    E +   TT   +C
Sbjct: 1446 CQKCNSLCKTCQSNS---TKCLSCFES---EQLRILTTNQCIC 1482


>tr|A0CRY6|A0CRY6_PARTE Chromosome undetermined scaffold_254, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00038903001 PE=4 SV=1
          Length = 2727

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 398  CRKCNTLMCTCWSETGVCFKCLSCYE 475
            C+KCN L  TC S T     CLSCYE
Sbjct: 1425 CQKCNNLCQTCQSSTS---NCLSCYE 1447


>tr|A0C7A8|A0C7A8_PARTE Chromosome undetermined scaffold_154, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00035805001 PE=4 SV=1
          Length = 3063

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 398  CRKCNTLMCTCWSETGVCFKCLSCYEPSSFESMMRST 508
            C+KCN L  TC S++    +CL+CYE      +  +T
Sbjct: 1417 CQKCNDLCKTCQSQSS---QCLACYETEQIRILQNNT 1450


>tr|A3MSY9|A3MSY9_PYRCJ Putative uncharacterized protein
           OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1)
           GN=Pcal_0321 PE=3 SV=1
          Length = 979

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
 Frame = -2

Query: 175 WRYLMGPFESXGH-----SCSKQIPGACW-----IPPFEIPDYIRNSAGPVHTACSPPSQ 26
           W Y   PF S G      S S       W      PP EIP YI  +     T CSPP  
Sbjct: 236 WTYRNAPFPSSGSFLYDISISVTAEPELWGSVELAPPREIPLYISRAVFGKPTDCSPPFC 295

Query: 25  FLLES 11
           FL+ S
Sbjct: 296 FLINS 300