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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915508
Clone id YMU001_000072_D12
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGAAATGAATCCGTAGACTACAATTATCGAGATTCAAGGTAAAATCCATAGGACAACAT
CGGAAGGACCACAAGGCATTAAGCACACCATTCTCCACCGGCACAGCTATGCATGGGAGT
CTACACTAATCAGTAACCATTATCACACTTCATAATTCCCGAACAAATTGGGCTAACATC
TGAGTGAAGATCGGCAGCCAGCATCCGGCAACCATTAGCCAAAACAACAGAGCCATGATG
TGTCTAATGGGATAAGGGAAAATTACTCCAATTAAGTGTGTCATCAATATACAATCAAGC
AGCACTTTACTTACATTCTAGTAAAGTAAAGGTGAATGGAGAACCTTGCCCAGGTTGCAG
GTAACCTAATCTTCATAGACCCTGCATTCATCAGCTTCTGGAGCATCCTTGCAAAACTCT
TCAAGAGGATCCTTAGTCTCAGACTGCTTGACGCGCTTGTGGGCAATCTCTGCAGATATC
TCCTCCACCTCATCCCAAGCAGCTGCGCACTCACCCGATCCGTTAT
■■Homology search results ■■ -
sp_hit_id A6Q0K5
Definition sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii
Align length 53
Score (bit) 72.8
E-value 9.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915508|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D12.
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas ...    73   9e-13
sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,...    37   0.074
sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,...    34   0.48 
sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c...    33   0.63 
sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis ...    33   1.1  
sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr...    30   9.1  

>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas
           reinhardtii GN=cp12 PE=1 SV=1
          Length = 80

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 3/53 (5%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKR--VKQSET-KDPLEEFCKDAPEADECRVYED 369
           S +CA AWD VEE+SA ++HK+  VK   T  DPLE FCKDAP+ADECRVYED
Sbjct: 28  SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 80


>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1
          Length = 451

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -3

Query: 431 DPLEEFCKDAPEADECRVYE 372
           DPLE+FCKD P  +EC++YE
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451


>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
          Length = 447

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 431 DPLEEFCKDAPEADECRVYE 372
           DPLE+FCK  P  +EC+VY+
Sbjct: 428 DPLEDFCKTNPADEECKVYD 447


>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2
          Length = 451

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 431 DPLEEFCKDAPEADECRVYE 372
           DPLE+FC+  P  +EC+VYE
Sbjct: 432 DPLEDFCETNPADEECKVYE 451


>sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis
           elegans GN=C17B7.2 PE=1 SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = -3

Query: 509 CAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED*VTCNLGKVLHSP 330
           C +AWD   E   E     + + + K+ L+E CKD    D C   E   TC   + +   
Sbjct: 101 CYSAWDPFPENFEE----ELDEKKKKEMLQENCKDYFGKDNCMKKEITETCGEDEWVKFR 156

Query: 329 LLY*NVSKVLLDCIL 285
             +  V  VL DC L
Sbjct: 157 AQFIGVGNVLSDCDL 171



 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = -3

Query: 509 CAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED*VTCNLGKVLHSP 330
           C   WD   E   E     + + + K+ L+E CKD    D C   E   TC   + +   
Sbjct: 258 CYTDWDPFPENYEE----ELDEKKKKEMLQEKCKDYFGKDNCMKMEITETCGEAEWVKFR 313

Query: 329 LLY*NVSKVLLDCIL 285
             +  V  V+ DC L
Sbjct: 314 AHFIGVGNVISDCDL 328


>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein
            2 OS=Homo sapiens GN=LRP2 PE=1 SV=3
          Length = 4655

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = -3

Query: 524  NGSGECAAAWDEVEEISAEIAHKRVKQSETKD------PLEEFCKDAPEADECRVYED*V 363
            NG  +C    DE EE   +   K   + E K       P +  C DA   D+C  + D +
Sbjct: 3904 NGVDDCGDGTDETEEHCRKPTPKPCTEYEYKCGNGHCIPHDNVCDDA---DDCGDWSDEL 3960

Query: 362  TCNLGK 345
             CN GK
Sbjct: 3961 GCNKGK 3966
tr_hit_id Q9FP25
Definition tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica
Align length 50
Score (bit) 78.6
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915508|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_D12.
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert seque...    79   2e-13
tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza...    79   2e-13
tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea...    78   2e-13
tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1     77   7e-13
tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subs...    75   2e-12
tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp. ...    75   3e-12
tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotian...    75   3e-12
tr|Q2WBV8|Q2WBV8_CYNSC Chloroplast protein 12 (Fragment) OS=Cyna...    74   3e-12
tr|B7FGI5|B7FGI5_MEDTR Putative uncharacterized protein OS=Medic...    74   3e-12
tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata G...    73   8e-12
tr|A9RS50|A9RS50_PHYPA Predicted protein (Fragment) OS=Physcomit...    73   8e-12
tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and ...    73   1e-11
tr|A7QEC8|A7QEC8_VITVI Chromosome chr1 scaffold_84, whole genome...    73   1e-11
tr|Q5QET3|Q5QET3_ARAHY Auxin-induced putative CP12 domain-contai...    72   2e-11
tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1                    71   3e-11
tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1                    71   3e-11
tr|A9RZE2|A9RZE2_PHYPA Predicted protein (Fragment) OS=Physcomit...    71   3e-11
tr|A1YMY3|A1YMY3_BRACM Putative chloroplast protein CP12 OS=Bras...    71   3e-11
tr|Q9LZP9|Q9LZP9_ARATH CP12 protein-like protein OS=Arabidopsis ...    71   4e-11
tr|O24292|O24292_PEA CP12 OS=Pisum sativum PE=2 SV=1                   71   4e-11
tr|B0C4A6|B0C4A6_ACAM1 CP12 domain protein OS=Acaryochloris mari...    70   5e-11
tr|B8HSF6|B8HSF6_9CHRO Putative uncharacterized protein OS=Cyano...    70   5e-11
tr|Q8LC81|Q8LC81_ARATH CP12 protein-like protein OS=Arabidopsis ...    70   5e-11
tr|A1YQX6|A1YQX6_VOLCA Calvin cycle protein CP12 OS=Volvox carte...    70   6e-11
tr|B2J9G9|B2J9G9_NOSP7 Putative uncharacterized protein OS=Nosto...    70   8e-11
tr|B7FML4|B7FML4_MEDTR Putative uncharacterized protein OS=Medic...    70   8e-11
tr|A9T3K8|A9T3K8_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   8e-11

>tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0035H10.18 PE=2 SV=1
          Length = 124

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 34/50 (68%), Positives = 39/50 (78%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           SGECAAAWDEVEE+SA  +H R K  ET DPLE +CKD PE DECR Y++
Sbjct: 75  SGECAAAWDEVEELSAAASHARDKLKETSDPLEAYCKDNPETDECRTYDN 124


>tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01556 PE=4 SV=1
          Length = 124

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 34/50 (68%), Positives = 39/50 (78%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           SGECAAAWDEVEE+SA  +H R K  ET DPLE +CKD PE DECR Y++
Sbjct: 75  SGECAAAWDEVEELSAAASHARDKLKETSDPLEAYCKDNPETDECRTYDN 124


>tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 36/50 (72%), Positives = 40/50 (80%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           SGECAA+WDEVEE+SA  +H R K  + KDPLEEFCKD PE DECR YED
Sbjct: 93  SGECAASWDEVEELSAARSHMREKD-KAKDPLEEFCKDNPETDECRTYED 141


>tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1
          Length = 131

 Score = 76.6 bits (187), Expect = 7e-13
 Identities = 35/52 (67%), Positives = 42/52 (80%), Gaps = 2/52 (3%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSET--KDPLEEFCKDAPEADECRVYED 369
           +GECAAAWDEVEE+SA  + K+ K+ E   KDPLE+FC+D PE DECRVYED
Sbjct: 80  TGECAAAWDEVEELSAAASDKKKKEKEIAKKDPLEKFCEDNPETDECRVYED 131


>tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0306800 PE=2 SV=1
          Length = 131

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = -3

Query: 515 GECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           GECAAAWDEVEE+SA  +H R ++ ++ DPLEE+CKD PE DECR YED
Sbjct: 84  GECAAAWDEVEELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131


>tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 127

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 34/50 (68%), Positives = 40/50 (80%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           SGECAAAWDEVEE+SA  +H + K+  + DPLEE+CKD PE DECR YED
Sbjct: 79  SGECAAAWDEVEELSAAASHAKDKKKGS-DPLEEYCKDNPETDECRTYED 127


>tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 127

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 34/50 (68%), Positives = 40/50 (80%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           SGECAAAWDEVEE+SA  +H + K+  + DPLEE+CKD PE DECR YED
Sbjct: 79  SGECAAAWDEVEELSAAASHAKDKKKGS-DPLEEYCKDNPETDECRTYED 127


>tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11237 PE=4 SV=1
          Length = 131

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = -3

Query: 515 GECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           GECAAAWDEVEE+SA  +H R ++ ++ DPLEE+CKD PE DECR YED
Sbjct: 84  GECAAAWDEVEELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131


>tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6)
           GN=SYNPCC7002_A1264 PE=4 SV=1
          Length = 73

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 34/50 (68%), Positives = 40/50 (80%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           S ECAAAWD VEE+ AE AH+R K+ E K PLE+FC D P+ADECR+YED
Sbjct: 25  SAECAAAWDAVEELQAEAAHQREKEPE-KSPLEKFCDDNPDADECRLYED 73


>tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotiana
           tabacum GN=CP12 PE=2 SV=1
          Length = 132

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 32/50 (64%), Positives = 38/50 (76%)
 Frame = -3

Query: 518 SGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 369
           SGECAAAWD VEE SA  +H R K+ E+ DPLE +CKD PE DECR Y++
Sbjct: 83  SGECAAAWDVVEEASAAASHARDKKKESSDPLENYCKDNPETDECRTYDN 132