BP915512
Clone id YMU001_000072_E04
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAGAGTTTATTCTGTTCTGTAATTTTCCAAACGCATACAATTCCTCTATCAATCAATTAC
GGGCTCAAAAGAATCTACGACAGCCATCATATTACAGTGGGTCGAATTGCGACGACTTAT
TGTATCAGAGACATGTAAACCTGCTTTTTGATCTCCCAATCTTATTTCTTTCTTCCTGGC
CAAGTATCTCCGTGTTGTTTGCAAGTGAACTATGGTATACACACACTTATGCACAAGAAG
ATCAAAGAATTGCCTTTTATGCCCAGTTGTTGAGCAAATTCAAAGGCTAAATATAAAAGA
ATTAGGCCGTTCTCAAAAAAAGTTCACTAGCTAAAGCTACAGAAGCTAATCCTTCAACTC
CAGACATATGCTGACTTTCCATTGCCATAATGTTCTCCAGATCCTACACCACTTCTTTCA
TATCTG
■■Homology search results ■■ -
sp_hit_id Q8I3Z1
Definition sp|Q8I3Z1|MLRR1_PLAF7 MATH and LRR domain-containing protein PFE0570w OS=Plasmodium falciparum (isolate 3D7)
Align length 30
Score (bit) 31.2
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915512|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_E04.
(426 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8I3Z1|MLRR1_PLAF7 MATH and LRR domain-containing protein PFE... 31 1.8
sp|Q5QA72|RPOB_ACOGR DNA-directed RNA polymerase subunit beta OS... 31 1.8
sp|Q3V542|RPOB_ACOCL DNA-directed RNA polymerase subunit beta OS... 31 1.8
sp|A9LYH7|RPOB_ACOAM DNA-directed RNA polymerase subunit beta OS... 31 1.8
sp|A3KNA7|SRBP2_DANRE Sterol regulatory element-binding protein ... 31 2.4
sp|Q09FW9|RPOB_NANDO DNA-directed RNA polymerase subunit beta OS... 31 2.4
sp|Q8HVY5|RPOB_SOYBN DNA-directed RNA polymerase subunit beta OS... 30 3.1
sp|A6LE81|RPOB_PARD8 DNA-directed RNA polymerase subunit beta OS... 30 3.1
sp|A4GYQ0|RPOB_POPTR DNA-directed RNA polymerase subunit beta OS... 30 4.1
sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protei... 30 5.2
sp|Q0ZJ28|RPOB_VITVI DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q2VEI4|RPOB_SOLTU DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q2MIA8|RPOB_SOLLC DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q2MIJ5|RPOB_SOLBU DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q2S1Q5|RPOB_SALRD DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q09X25|RPOB_MORIN DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q06RD9|RPOB_JASNU DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A6MMT6|RPOB_ILLOL DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q2L8Z9|RPOB_GOSHI DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A0ZZ27|RPOB_GOSBA DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A6GYU0|RPOB_FLAPJ DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A5FIJ3|RPOB_FLAJ1 DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q0G9X0|RPOB_DAUCA DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A6MMB4|RPOB_CHLSC DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A8SE86|RPOB_CERDE DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A6MM28|RPOB_BUXMI DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|Q8S8X9|RPOB_ATRBE DNA-directed RNA polymerase subunit beta OS... 30 5.3
sp|A9ULH0|RWDD3_XENTR RWD domain-containing protein 3 OS=Xenopus... 29 6.8
sp|Q8WI24|RPOB_PSINU DNA-directed RNA polymerase subunit beta OS... 29 7.0
sp|P06271|RPOB_TOBAC DNA-directed RNA polymerase subunit beta OS... 29 9.1

>sp|Q8I3Z1|MLRR1_PLAF7 MATH and LRR domain-containing protein PFE0570w
OS=Plasmodium falciparum (isolate 3D7) GN=PFE0570w PE=2
SV=1
Length = 10061

Score = 31.2 bits (69), Expect = 1.8
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3

Query: 30 NAYNSSINQLRAQKNLRQPSYY--SGSNCD 113
N YNSSIN L+ N + +YY SNCD
Sbjct: 1516 NNYNSSINDLKKNDNNKSNNYYINKNSNCD 1545


>sp|Q5QA72|RPOB_ACOGR DNA-directed RNA polymerase subunit beta
OS=Acorus gramineus GN=rpoB PE=3 SV=1
Length = 1071

Score = 31.2 bits (69), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Frame = -1

Query: 201 QTTRRYLARKKEIRLGDQKAGLH-----VSDTISRRNSTHCNMMAVVDS-FEPV 58
+T R Y+++K+EI++GD+ AG H +S +SR++ + VD F P+
Sbjct: 803 ETIRVYISQKREIKVGDKVAGRHGNKGIISKILSRQDMPYLQDGTPVDMVFNPL 856


>sp|Q3V542|RPOB_ACOCL DNA-directed RNA polymerase subunit beta
OS=Acorus calamus GN=rpoB PE=3 SV=2
Length = 1071

Score = 31.2 bits (69), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Frame = -1

Query: 201 QTTRRYLARKKEIRLGDQKAGLH-----VSDTISRRNSTHCNMMAVVDS-FEPV 58
+T R Y+++K+EI++GD+ AG H +S +SR++ + VD F P+
Sbjct: 803 ETIRVYISQKREIKVGDKVAGRHGNKGIISKILSRQDMPYLQDGTPVDMVFNPL 856


>sp|A9LYH7|RPOB_ACOAM DNA-directed RNA polymerase subunit beta
OS=Acorus americanus GN=rpoB PE=3 SV=1
Length = 1083

Score = 31.2 bits (69), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Frame = -1

Query: 201 QTTRRYLARKKEIRLGDQKAGLH-----VSDTISRRNSTHCNMMAVVDS-FEPV 58
+T R Y+++K+EI++GD+ AG H +S +SR++ + VD F P+
Sbjct: 815 ETIRVYISQKREIKVGDKVAGRHGNKGIISKILSRQDMPYLQDGTPVDMVFNPL 868


>sp|A3KNA7|SRBP2_DANRE Sterol regulatory element-binding protein 2
OS=Danio rerio GN=srebf2 PE=2 SV=1
Length = 1099

Score = 30.8 bits (68), Expect = 2.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1

Query: 175 PGQVSPCCLQVNYGIHTLMHKKIKELPFMPSC 270
P Q+SP C+ G L H+++K P PSC
Sbjct: 422 PAQLSPYCIDSEPGSPLLEHEQLKSEPDSPSC 453


>sp|Q09FW9|RPOB_NANDO DNA-directed RNA polymerase subunit beta
OS=Nandina domestica GN=rpoB PE=3 SV=1
Length = 1070

Score = 30.8 bits (68), Expect = 2.4
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -1

Query: 234 VHKCVYTIVHLQTTRRYLARKKEIRLGDQKAGLH 133
+HK + + +T R Y+++K+EI++GD+ AG H
Sbjct: 791 IHKKGGSSYNPETIRVYISQKREIKVGDKVAGRH 824


>sp|Q8HVY5|RPOB_SOYBN DNA-directed RNA polymerase subunit beta
OS=Glycine max GN=rpoB PE=3 SV=2
Length = 1070

Score = 30.4 bits (67), Expect = 3.1
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = -1

Query: 201 QTTRRYLARKKEIRLGDQKAGLH-----VSDTISRRNSTHCNMMAVVDS-FEPV 58
+T R Y+ +K+EI++GD+ AG H VS +SR++ + VD F P+
Sbjct: 802 ETIRIYILQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDMVFNPL 855


>sp|A6LE81|RPOB_PARD8 DNA-directed RNA polymerase subunit beta
OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=rpoB PE=3 SV=1
Length = 1270

Score = 30.4 bits (67), Expect = 3.1
Identities = 15/42 (35%), Positives = 29/42 (69%)
Frame = -1

Query: 258 KRQFFDLLVHKCVYTIVHLQTTRRYLARKKEIRLGDQKAGLH 133
+R+ FDL + + T + +Q + Y+A+K++I++GD+ AG H
Sbjct: 1014 RRKKFDLTIGDELPTGI-VQMAKVYIAKKRKIQVGDKMAGRH 1054


>sp|A4GYQ0|RPOB_POPTR DNA-directed RNA polymerase subunit beta
OS=Populus trichocarpa GN=rpoB PE=3 SV=1
Length = 1070

Score = 30.0 bits (66), Expect = 4.1
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = -1

Query: 201 QTTRRYLARKKEIRLGDQKAGLH-----VSDTISRRNSTHCNMMAVVDS-FEPV 58
+T R Y+ +K+EI++GD+ AG H +S + R++ + A VD F P+
Sbjct: 802 ETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGAPVDMVFNPL 855


>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein
At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500

Score = 29.6 bits (65), Expect = 5.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2

Query: 299 LLYLAFEFAQQLGIKGNSLIFLCISVCIP*FTCKQHGDTWPG 174
LL A E + + +K NS+I+ + F+C+ HGD W G
Sbjct: 373 LLQEALELIENMPMKPNSVIWGSLL-----FSCRVHGDVWTG 409


tr_hit_id B7BNN1
Definition tr|B7BNN1|B7BNN1_9CLOT Putative uncharacterized protein OS=Clostridium hylemonae DSM 15053
Align length 86
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915512|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_E04.
(426 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7BNN1|B7BNN1_9CLOT Putative uncharacterized protein OS=Clost... 33 5.5
tr|B8R4A8|B8R4A8_TRISU RNA polymerase beta subunit OS=Trifolium ... 33 5.5

>tr|B7BNN1|B7BNN1_9CLOT Putative uncharacterized protein
OS=Clostridium hylemonae DSM 15053 GN=CLOHYLEM_02122
PE=4 SV=1
Length = 360

Score = 33.5 bits (75), Expect = 5.5
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1

Query: 55 NYGLKRIYDSHHITVGRIATTYCIRDM*TCFLI--SQSYFFLPGQVSPCCLQ----VNYG 216
N G+ + SH+I VGR+ YC TC L+ SQS + Q P Q + G
Sbjct: 248 NLGVTEVTSSHYIKVGRLVYVYC-----TCKLLHSSQSSSIMSLQGLPYESQNTAVLGLG 302

Query: 217 IHTLMHKKIKELPFMPSC*ANSKAKY 294
+ TL + IK+ P++P NS K+
Sbjct: 303 VSTLTN--IKQRPYIPYI-ENSSIKF 325


>tr|B8R4A8|B8R4A8_TRISU RNA polymerase beta subunit OS=Trifolium
subterraneum GN=rpoB PE=4 SV=1
Length = 1070

Score = 33.5 bits (75), Expect = 5.5
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Frame = -1

Query: 234 VHKCVYTIVHLQTTRRYLARKKEIRLGDQKAGLH-----VSDTISRRNSTHCNMMAVVDS 70
+HK + H +T + Y+++K+EI++GD+ AG H VS +SR++ + VD
Sbjct: 791 IHKKEASSDHPETIQIYISQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDM 850

Query: 69 -FEPV 58
F P+
Sbjct: 851 VFNPL 855