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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915518
Clone id YMU001_000072_E10
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTACAATCTCTCTCTTCTTATTTACAATTTTAAGGTGCTCTCTCTAATATCGCTCGGTT
TTGTGATTGCTCGGGAAGTTCACTCAAAGTCTCAAAATCCTCCTTTGGAGTTATTTTGCT
TTTGGGACGACTCAAGATCCTCTACCTTGCAAATTTTGGCCCTTAGGTAACCACAATTGC
CTTGGTTTCAGATTATTGTGCCTTGTGTGGCATTCTCCCTTGTTTGGTATCGCGTTTTAT
AAGACCTGTGTTTGCCTCTATGTTCATGCCTCTTGGTAGAGATGTTTATCTTGGCTTGCA
ACTTGTACACTAAGGTGTGGTTTTGGTAGCCACAACTTTGCTTGGCCTTCATAATGTCCT
TGTGCCTCCAAAGGCTTCTTTGTAGTGAGCCACCCTGTTGAGTTGTTTTCCTGTCTTGAC
TGGCCTTCAGCCCATCGAGGCTCATCACCATCACTTACTTATTTACCTTGGACTAGCCCT
AGCTACCAGTGGAGCTAAGGAATCCAGTACCAAGTTGTCCATCCTGAAATTAGGCAAATC
TCCAGGATTTGTGGATGAGGAAGCATAATATCCATTGGA
■■Homology search results ■■ -
sp_hit_id P19506
Definition sp|P19506|VIF_SIVSP Virion infectivity factor OS=Simian immunodeficiency virus (isolate PBj14/BCL-3)
Align length 86
Score (bit) 32.3
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915518|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_E10.
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19506|VIF_SIVSP Virion infectivity factor OS=Simian immunode...    32   1.8  
sp|P12505|VIF_SIVS4 Virion infectivity factor OS=Simian immunode...    32   1.8  
sp|Q53143|CYCG_RHOS4 Diheme cytochrome c-type OS=Rhodobacter sph...    31   3.9  
sp|Q96NL6|SCLT1_HUMAN Sodium channel and clathrin linker 1 OS=Ho...    30   6.7  
sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidops...    30   8.7  
sp|Q5ZJ26|K1671_CHICK Uncharacterized protein KIAA1671 homolog O...    30   8.7  

>sp|P19506|VIF_SIVSP Virion infectivity factor OS=Simian
           immunodeficiency virus (isolate PBj14/BCL-3) GN=vif PE=2
           SV=1
          Length = 214

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
 Frame = +1

Query: 292 WLATCTLRCGFGSHNFAWPS*CP-------------CASKGFFVVSHPV---ELFSCLDW 423
           WL+T  +R  + S NF W    P             C S+G   V   +   +L SC  +
Sbjct: 81  WLSTYAVRITWYSRNF-WTDVTPDYADTLLHGTYFPCFSEG--EVRRAIRGEKLLSCCKF 137

Query: 424 PSAHRGSSPSLTYLPWTSPSYQWS*G 501
           P AH+   PSL YL  T  S+  S G
Sbjct: 138 PKAHKNQVPSLQYLALTVVSHVRSQG 163


>sp|P12505|VIF_SIVS4 Virion infectivity factor OS=Simian
           immunodeficiency virus (isolate F236/smH4) GN=vif PE=2
           SV=1
          Length = 214

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
 Frame = +1

Query: 292 WLATCTLRCGFGSHNFAWPS*CP-------------CASKGFFVVSHPVE-LFSCLDWPS 429
           WL+T  +R  + S NF W    P             C S+G    +   E L SC  +P 
Sbjct: 81  WLSTYAVRITWYSRNF-WTDVTPDYADTLLHSTYFPCFSEGEVRKAIRGEKLLSCCKFPK 139

Query: 430 AHRGSSPSLTYLPWTSPSYQWS*G 501
           AH+   PSL YL  T  S+  S G
Sbjct: 140 AHKNQVPSLQYLALTVVSHVRSQG 163


>sp|Q53143|CYCG_RHOS4 Diheme cytochrome c-type OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=cycG PE=4 SV=1
          Length = 296

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 218 GECHTRHNNL--KPRQLWLPKGQNLQGRGS 135
           GECHT  N L  + +  WL  G N +GRG+
Sbjct: 203 GECHTPRNGLGLRDKSRWLAGGPNPEGRGT 232


>sp|Q96NL6|SCLT1_HUMAN Sodium channel and clathrin linker 1 OS=Homo
           sapiens GN=SCLT1 PE=2 SV=1
          Length = 688

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 27/128 (21%), Positives = 57/128 (44%)
 Frame = -3

Query: 388 SLQRSLWRHKDIMKAKQSCGYQNHTLVYKLQAKINISTKRHEHRGKHRSYKTRYQTRENA 209
           S QR   + ++    K++   +   L  + +AK+ IST  HE   K R ++ + +  E++
Sbjct: 510 SEQRLKLQQENKQLRKETESLRKIALEAQKKAKVKISTMEHEFSIKERGFEVQLREMEDS 569

Query: 208 TQGTII*NQGNCGYLRAKICKVEDLESSQKQNNSKGGF*DFE*TSRAITKPSDIRESTLK 29
            + +I+        LR  +   +   +  K+   K            +T+ ++IR + LK
Sbjct: 570 NRNSIV-------ELRHLLATQQKAANRWKEETKK------------LTESAEIRINNLK 610

Query: 28  L*IRRERL 5
             + R++L
Sbjct: 611 SELSRQKL 618


>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis
            thaliana GN=RCH2 PE=1 SV=1
          Length = 1141

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 367  RHKDIMKAKQSCGYQN-HTLVYKLQAKINISTKRHEHRGKHRSYKTRYQTRENATQG 200
            RHK+I++    C  +N   L+Y      ++ +  HE RG    +  RY+    A QG
Sbjct: 847  RHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERRGSSLDWDLRYRILLGAAQG 903


>sp|Q5ZJ26|K1671_CHICK Uncharacterized protein KIAA1671 homolog
           OS=Gallus gallus GN=RCJMB04_21h11 PE=2 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 440 PRWAEGQSRQENNSTGWLTTKKPLEAQGHYEGQ 342
           P   E + R E  S  WL   K  E Q HYE Q
Sbjct: 280 PSSVEKEERSEEKSPQWLKELKSKERQSHYENQ 312
tr_hit_id Q89716
Definition tr|Q89716|Q89716_SIVCZ Virion infectivity factor OS=Simian immunodeficiency virus (isolate CPZ GAB1)
Align length 85
Score (bit) 33.9
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915518|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_E10.
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q89716|Q89716_SIVCZ Virion infectivity factor OS=Simian immun...    34   6.8  
tr|Q76UX9|Q76UX9_SIVCZ Virion infectivity factor OS=Simian immun...    34   6.8  

>tr|Q89716|Q89716_SIVCZ Virion infectivity factor OS=Simian
           immunodeficiency virus (isolate CPZ GAB1) GN=vif PE=3
           SV=2
          Length = 214

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
 Frame = +1

Query: 292 WLATCTLRCGFGSHNF---AWPS*C---------PCASKGFFVVSHPV---ELFSCLDWP 426
           WL+T  +R  + S NF   A P            PC S+G   V   +   +L SC  +P
Sbjct: 81  WLSTYAVRITWYSRNFWTDATPDYADTLLHGTYFPCFSEG--EVRRAIRGEKLLSCCKFP 138

Query: 427 SAHRGSSPSLTYLPWTSPSYQWS*G 501
            AH+   PSL YL  T  S+  S G
Sbjct: 139 KAHKNQVPSLQYLALTVVSHVXSQG 163


>tr|Q76UX9|Q76UX9_SIVCZ Virion infectivity factor OS=Simian
           immunodeficiency virus (isolate CPZ GAB1) GN=vif PE=3
           SV=1
          Length = 214

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
 Frame = +1

Query: 292 WLATCTLRCGFGSHNF---AWPS*C---------PCASKGFFVVSHPV---ELFSCLDWP 426
           WL+T  +R  + S NF   A P            PC S+G   V   +   +L SC  +P
Sbjct: 81  WLSTYAVRITWYSRNFWTDATPDYADTLLHGTYFPCFSEG--EVRRAIRGEKLLSCCKFP 138

Query: 427 SAHRGSSPSLTYLPWTSPSYQWS*G 501
            AH+   PSL YL  T  S+  S G
Sbjct: 139 KAHKNQVPSLQYLALTVVSHVXSQG 163