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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915519
Clone id YMU001_000072_E11
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGATGCAATCAAGCTCAGATCACGAGGCTACTCAGAGGAGCTGCAGGTAGGGGCCTGCAA
GGGCAGCCAGTTTCAGAGGAGGGGAAGGTCCTTCTAGTGTGTGTGTGAGAGTGGGAAGAG
ACAAGATTAAGGGGCATCGGGGTGTTTGCGCTCACAACGAGCAACCCATCTTGAAGAGAG
GGCCGACGACATGCAGCTTCAAAGCAAGGTTTATGCTTGCATGGGTTTGAGCCAGGGTAG
GGCACGATCAACAGGATAAAGCAGTGGGCAAGACAAAGGAGGAGCTCAAAGAGAGTTGGG
GAGACGGGCTGTAGAAGGGGCTCAAGTGGAGCTGATAAGGAGTCGAGCCAGCTCATAGTA
TGTAGGAGGCTTTTCACAGATTGAGGCCTTGTCTTACAGGCTACAGACAGAGGCCCTGGT
GATGTCATCCTCATAGTGTTCATAGGCTGAATTGGCAAAGCAGAGGGCTGAGTTTTATGA
GTTAGCAAGTGCTACGGCCGCATTTAGCATGCAAATAGGAAGTGTGG
■■Homology search results ■■ -
sp_hit_id Q62901
Definition sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus norvegicus
Align length 168
Score (bit) 35.4
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915519|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_E11.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats prot...    35   0.17 
sp|Q00613|HSF1_HUMAN Heat shock factor protein 1 OS=Homo sapiens...    33   1.1  
sp|A7XYH5|SOBP_CHICK Sine oculis-binding protein homolog OS=Gall...    31   4.1  
sp|P15217|EGIP_ANTCR Exogastrula-inducing polypeptide OS=Anthoci...    31   4.1  
sp|O35806|LTBP2_RAT Latent-transforming growth factor beta-bindi...    27   5.1  
sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens GN...    30   5.4  
sp|Q24760|FRIZ_DROVI Frizzled OS=Drosophila virilis GN=fz PE=2 SV=2    30   5.4  
sp|Q5SSG4|GA2L2_MOUSE GAS2-like protein 2 OS=Mus musculus GN=Gas...    25   6.9  
sp|Q8TA94|ZN563_HUMAN Zinc finger protein 563 OS=Homo sapiens GN...    30   7.1  
sp|A7XYH9|SOBP_BOVIN Sine oculis-binding protein homolog OS=Bos ...    30   7.1  
sp|Q8BQC3|PUNC_MOUSE Putative neuronal cell adhesion molecule OS...    30   7.1  
sp|Q5RE82|DPH2_PONAB Diphthamide biosynthesis protein 2 OS=Pongo...    30   7.1  
sp|Q8IVU1|PUNC_HUMAN Putative neuronal cell adhesion molecule OS...    30   9.2  
sp|P97738|NPTX2_RAT Neuronal pentraxin-2 OS=Rattus norvegicus GN...    30   9.2  
sp|Q9BQC3|DPH2_HUMAN Diphthamide biosynthesis protein 2 OS=Homo ...    30   9.2  

>sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein
            OS=Rattus norvegicus GN=Rere PE=2 SV=2
          Length = 1559

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 42/168 (25%), Positives = 57/168 (33%), Gaps = 23/168 (13%)
 Frame = -1

Query: 464  SALPIQPMNTMRMTSPGPLSVACKTRPQSVKSLLHTMSWLDSLSAPLEPLLQPVSPTLFE 285
            SA    P  T ++ +PGP   A    PQ   +     +   S  AP    L   +PTL  
Sbjct: 748  SAPSTAPPGTTQLPTPGPTPSATTVPPQGSPATSQPPNQTQSTVAPAAHTLIQQTPTLHP 807

Query: 284  XXXXXXXXXXXXIVPYPGSNPCKHKPCFEAACRRP----SLQDGLLVVSANTPMPLNLVS 117
                        +   P  N  +  P      + P    SLQ G L+     P P  L  
Sbjct: 808  PRLPSPHPPLQPMTAPPSQNSAQPHPQPSLHGQGPPGPHSLQTGPLLQHPGPPQPFGLTP 867

Query: 116  SHS-------------HTHTRRTFPSSETGC----PCR--PLPAAPLS 30
              S             H H+    P+S++      P R  PLP APL+
Sbjct: 868  QSSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPREQPLPPAPLA 915


>sp|Q00613|HSF1_HUMAN Heat shock factor protein 1 OS=Homo sapiens
           GN=HSF1 PE=1 SV=1
          Length = 529

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
 Frame = -1

Query: 488 LLTHKTQPSALPIQPMNTMRMTSPGPLSVACKTRPQSVKSLLHTMSWLDSLSAPLEPLLQ 309
           L+  K +P + P  P   +   SPG        RP SV +LL   + +DS+    EP   
Sbjct: 294 LVRVKEEPPSPPQSPR--VEEASPG--------RPSSVDTLLSPTALIDSILRESEP--A 341

Query: 308 PVSPTLFEXXXXXXXXXXXXIVPYPGSNPCKHKPCFEAAC-RRPSLQDGLLVVSANTPMP 132
           P S T                 P P S P K   C   AC  +  L D L  + +N    
Sbjct: 342 PASVTALTDARGHTDTEGRPPSPPPTSTPEK---CLSVACLDKNELSDHLDAMDSNLDNL 398

Query: 131 LNLVSSH 111
             ++SSH
Sbjct: 399 QTMLSSH 405


>sp|A7XYH5|SOBP_CHICK Sine oculis-binding protein homolog OS=Gallus
           gallus GN=SOBP PE=2 SV=1
          Length = 873

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 146 NTPMPLNLVSSHSHTHTRRTFPSSETGCPCRPLPAAPLSSL 24
           ++PM   ++S H H  T  T P +  G    P P APL SL
Sbjct: 448 SSPMHRPMLSPHIHPPTTPTMPGNPPGLLPPPPPGAPLPSL 488


>sp|P15217|EGIP_ANTCR Exogastrula-inducing polypeptide
           OS=Anthocidaris crassispina PE=1 SV=2
          Length = 325

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +2

Query: 50  GACKGSQFQRRGRSF*CVCESGKRQD*GASGCLRS--QRATHLEERADDMQLQ----SKV 211
           G C+ S F RR   + C C++G R+     GC  S  +   +L   A D++++      V
Sbjct: 122 GTCQLSTFGRRTGQYICFCDAGYRKPNSYGGCSPSSARELEYLSYVARDVEMEMLARDSV 181

Query: 212 YAC 220
           Y C
Sbjct: 182 YQC 184


>sp|O35806|LTBP2_RAT Latent-transforming growth factor beta-binding
           protein 2 OS=Rattus norvegicus GN=Ltbp2 PE=2 SV=1
          Length = 1764

 Score = 26.6 bits (57), Expect(2) = 5.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 32  SEELQVGACKGSQFQRRGRSF*CVCESGKRQD*GASGCLRSQRATHLEE 178
           +E L +G CK S+      S+ C C  G   D   S C+ S +A  +++
Sbjct: 610 NECLTLGLCKDSECVNTRGSYLCTCRPGLMLDPSRSRCV-SDKAVSMKQ 657



 Score = 21.6 bits (44), Expect(2) = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 202 KQGLCLHGFEPG*GTINRIKQWARQRRSSKRVGE 303
           KQGLC      G  T+  +++  +Q     RVG+
Sbjct: 656 KQGLCYRSMVSGTCTLPLVQRITKQICCCSRVGK 689


>sp|Q9UGU0|TCF20_HUMAN Transcription factor 20 OS=Homo sapiens
           GN=TCF20 PE=1 SV=3
          Length = 1960

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = +2

Query: 134 ASGCLRSQRATHLEERADDMQLQSKVYACMGLSQGRARSTG*SSGQD-------KGGAQR 292
           A  C  S+ ++  EE+      +S    C   S+ +       SGQ        KGGA  
Sbjct: 495 ADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKGGASE 554

Query: 293 ELGRRAVEGAQVELIRSRAS 352
           + G    +GAQ E  R  AS
Sbjct: 555 KAGSSPAQGAQNEPPRLNAS 574


>sp|Q24760|FRIZ_DROVI Frizzled OS=Drosophila virilis GN=fz PE=2 SV=2
          Length = 583

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 202 LKLHVVGPLFKMGCSL*AQTPRCPLILSLPTLTHTLEGPSPPLK 71
           L++H   PL K+GCS   Q   C L + + T+   LE P PP +
Sbjct: 88  LEVHQFAPLVKIGCSADLQLFLCSLYVPVCTI---LERPIPPCR 128


>sp|Q5SSG4|GA2L2_MOUSE GAS2-like protein 2 OS=Mus musculus GN=Gas2l2
           PE=2 SV=1
          Length = 860

 Score = 24.6 bits (52), Expect(2) = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 133 PLILSLPTLTH---TLEGPSPPLKLAALAGPYL 44
           P  L +P  T    +  GPSPP + ++LA P++
Sbjct: 430 PQRLQIPEATSKRTSARGPSPPPRSSSLASPHM 462



 Score = 23.1 bits (48), Expect(2) = 6.9
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 242 PYPGSNPCKHKPCFEAACRRPSLQDGLLVVSAN 144
           P P        P F + CR P LQ  L    AN
Sbjct: 366 PTPSQRMSSPGPQFSSTCRGPDLQSTLSGKRAN 398


>sp|Q8TA94|ZN563_HUMAN Zinc finger protein 563 OS=Homo sapiens
           GN=ZNF563 PE=2 SV=1
          Length = 476

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -1

Query: 236 PGSNPCKHKPCFEAACRRPSLQDGLLVVSANTPMPLNLVSSHSHTHTRR 90
           PG +PC+   C E      SL   + V S + P          HTH +R
Sbjct: 98  PGEDPCQSAECEEVIMGHLSLNSHIRVDSGHKPHEYQEYGEKPHTHKQR 146


>sp|A7XYH9|SOBP_BOVIN Sine oculis-binding protein homolog OS=Bos
           taurus GN=SOBP PE=2 SV=1
          Length = 872

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 146 NTPMPLNLVSSHSHTHTRRTFPSSETGCPCRPLPAAPLSSL 24
           ++PM   L+S H H  +  T P +  G    P P APL SL
Sbjct: 448 SSPMHRPLLSPHIHPPSTPTMPGNPPGLLPPPPPGAPLPSL 488
tr_hit_id A8X0X3
Definition tr|A8X0X3|A8X0X3_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 114
Score (bit) 37.4
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915519|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_E11.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8X0X3|A8X0X3_CAEBR Putative uncharacterized protein OS=Caeno...    37   0.47 
tr|Q4YEW9|Q4YEW9_PLABE Putative uncharacterized protein (Fragmen...    36   1.4  
tr|A7RG95|A7RG95_NEMVE Predicted protein OS=Nematostella vectens...    35   1.8  
tr|B6KG80|B6KG80_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.3  

>tr|A8X0X3|A8X0X3_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG06094 PE=4 SV=1
          Length = 226

 Score = 37.4 bits (85), Expect = 0.47
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = +2

Query: 17  RSRGYSEELQVGACKGSQFQRRGRSF*CVCESGKRQD*GASGCLRSQRATHLEERADDMQ 196
           +S+G S + Q    +  +   RG ++      G  Q+       R    THL+E+     
Sbjct: 13  KSKGRSGQYQENDERSRRSGNRGLAYEARWWGGAGQEGENERSRRLNTKTHLQEKIRARS 72

Query: 197 LQSKVYACMGLSQGRARS-TG*SSGQDKGGAQRELGRRAVEGAQVELIRSRASS 355
            Q +  A  G  QGR+R+  G   G+ + GA +E GR    GA  E  RSRA +
Sbjct: 73  GQEQGRAGAGQEQGRSRAGAGQEQGRSRAGAGQEQGRSRA-GAGQEQGRSRAGA 125


>tr|Q4YEW9|Q4YEW9_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB404948.00.0 PE=4 SV=1
          Length = 92

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = -1

Query: 314 LQPVSPTLFEXXXXXXXXXXXXIVPYPGSNPCKHKPCFEAACRRPSLQDGLLVVSANTPM 135
           L P+SP                   +  S P  H P F +A    SL    L +S +  +
Sbjct: 14  LLPLSPLFLSLVLISLSLKFSLRNSFLSSPPFPHSPSFVSASLSLSLS---LSLSLSLSL 70

Query: 134 PLNLVSSHSHTHTRRT 87
           PL+L  SH+HTHT +T
Sbjct: 71  PLSLSLSHTHTHTPQT 86


>tr|A7RG95|A7RG95_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g238046 PE=4 SV=1
          Length = 1837

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 185 RPSLQDGLLVVSANTPMPLNLV-SSHSHTHTRRTFPSSETGCPC 57
           +PSL D L   ++N+  P  LV SS  H HT++T  S E   PC
Sbjct: 425 QPSLSDSLTATTSNSASPSLLVKSSPLHKHTQKTLESEENCGPC 468


>tr|B6KG80|B6KG80_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_044720 PE=4 SV=1
          Length = 2522

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
 Frame = -1

Query: 209 PCFEAACRRPSLQDGLLVV-------SANTPMPLNLVSSHSHTHTRRTFPSS-------- 75
           PC + A RRPSL   L  V       S+N P  L+  SS S +H   + PSS        
Sbjct: 677 PCLQDASRRPSLPSPLPSVHTRLASMSSNFPASLSSCSSSSSSHASSSLPSSSLPSSSSL 736

Query: 74  -ETGCPCRPLPAAPLSS 27
             +  P   LP+A L S
Sbjct: 737 ASSSLPSFSLPSASLPS 753