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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915521
Clone id YMU001_000072_F01
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGGAAAGCTAGCACAGATCTGCTCCCTCTAACCGAAGATGATTTGGATGTTGTGGTCTC
TCTGTTGAAAGAAGACATTCAAGTGCACTGGGAGGGACATCACCAAGTGGCAGTCGGCAC
TTAAGTCGTTTTCCGGTGTTCTGGCACTTCCCGCACCAGAGGGCCAACCAGAGGGTGTTG
GAAGGAGTTTGGTTGATGGCTAAAGTATATAATATCTCGAGAGCCGCCCATGGCATGATT
TCTGCAGCAAAACTGTACAGACAAAGTAAATTGAGCAGAATTGTTCATAGAAGTTGGGCG
GATAGTTGGCACAAAGCACAGAGCACAAGCAGTAAACACCAAAGTGGGCCAGGTATTGCG
GCTCCTTTCCCTAGAGAAGGGATATGAAGGCCCTACCCTTAGCGTGTCCACACCTGTTGC
CATATATGTTGCTCTGCCTGCAGTGGATGTCCTGGTGGCATCGATGCTAATTACATCGGG
AATGGGAGAGTCCAATCGGGGACGGGCACAT
■■Homology search results ■■ -
sp_hit_id P12257
Definition sp|P12257|GUB2_HORVU Lichenase-2 (Fragment) OS=Hordeum vulgare
Align length 32
Score (bit) 36.2
E-value 0.091
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915521|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_F01.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12257|GUB2_HORVU Lichenase-2 (Fragment) OS=Hordeum vulgare P...    36   0.091
sp|Q02437|E13D_HORVU Glucan endo-1,3-beta-glucosidase GIV OS=Hor...    33   0.59 
sp|Q8MIU0|TYRO_BOVIN Tyrosinase OS=Bos taurus GN=TYR PE=2 SV=2         33   1.0  
sp|O53802|Y739_MYCTU Uncharacterized protein Rv0739/MT0764 OS=My...    32   1.7  
sp|Q9Y704|MOK14_SCHPO Cell wall alpha-1,3-glucan synthase mok14 ...    32   1.7  
sp|Q9RW01|PUR9_DEIRA Bifunctional purine biosynthesis protein pu...    31   2.9  
sp|Q8PYJ0|Y871_METMA UPF0219 protein MM_0871 OS=Methanosarcina m...    31   3.8  
sp|P55027|TYRP1_AMBME 5,6-dihydroxyindole-2-carboxylic acid oxid...    31   3.8  
sp|Q8TIV0|Y4041_METAC UPF0219 protein MA_4041 OS=Methanosarcina ...    30   5.0  
sp|P45403|CCMF_BRAJA Cytochrome c-type biogenesis protein cycK O...    30   6.5  
sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    30   8.5  

>sp|P12257|GUB2_HORVU Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1
           SV=1
          Length = 312

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -1

Query: 196 STKLLPTPSGWPSGAGSARTPENDLSADCHLV 101
           S KL+ + SGWPSG G+A TP N    + HL+
Sbjct: 231 SVKLVVSESGWPSGGGTAATPANARFYNQHLI 262


>sp|Q02437|E13D_HORVU Glucan endo-1,3-beta-glucosidase GIV
           OS=Hordeum vulgare PE=2 SV=1
          Length = 327

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 199 PSTKLLPTPSGWPSGAGSARTPEN 128
           PS +++ + SGWPS  G A TPEN
Sbjct: 225 PSVRVVVSESGWPSAGGFAATPEN 248


>sp|Q8MIU0|TYRO_BOVIN Tyrosinase OS=Bos taurus GN=TYR PE=2 SV=2
          Length = 530

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 441 AGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALCF 313
           +GR +     + T  +GP +PF+    R +WP++ +     CF
Sbjct: 50  SGRGSCQDVILSTAPLGPQFPFTGVDDRESWPSIFYNRTCQCF 92


>sp|O53802|Y739_MYCTU Uncharacterized protein Rv0739/MT0764
           OS=Mycobacterium tuberculosis GN=Rv0739 PE=4 SV=1
          Length = 268

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
 Frame = +1

Query: 34  RR*FGCCGLSVERR--HSSALGGTSPSGSRHLSRFPVFWHFPHQRANQRVLEGVWLMAKV 207
           RR  G  G  +E    H  ALG  +P+G+R+ SRF                    L  K 
Sbjct: 41  RRRLGAIGAEIENAVAHQRALGLDTPAGARNFSRF--------------------LATKA 80

Query: 208 YNISRAAHGMISAAKLYRQSKLSRIVHRSWADSWHKAQSTSSKHQSGPGIAAPFP 372
           ++I+R    +++A     Q+  +R+  RS A S ++A     K Q  P    PFP
Sbjct: 81  HDITR----VLAATAAESQAGAARL--RSLASS-YQAVGFGPKPQEPPPDPVPFP 128


>sp|Q9Y704|MOK14_SCHPO Cell wall alpha-1,3-glucan synthase mok14
           OS=Schizosaccharomyces pombe GN=mok14 PE=1 SV=1
          Length = 1369

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 52  CGLSVERRHSSALGGTSPS---GSRHLSRFPVFW 144
           CG+S  RRH S  G    S   G R   R+PVFW
Sbjct: 458 CGVSYVRRHQSGYGVVGVSNKYGQRSWVRYPVFW 491


>sp|Q9RW01|PUR9_DEIRA Bifunctional purine biosynthesis protein purH
           OS=Deinococcus radiodurans GN=purH PE=3 SV=2
          Length = 510

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 96  DITKWQSALKSFSGVLALPAPEGQPEGVG----RSLVDG*SI*YLESRPWHDFCSKTV 257
           D  +W +A K    VL      GQP+GV     R L  G ++   ++RPW D C + V
Sbjct: 335 DAVEWFAAKKPDLRVLIA----GQPQGVSVLDVRPLTGGFAVQERDARPWDDLCPEVV 388


>sp|Q8PYJ0|Y871_METMA UPF0219 protein MM_0871 OS=Methanosarcina
           mazei GN=MM_0871 PE=3 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = -2

Query: 492 DSPIPDVISIDATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALCF 313
           +  +PD+    AT    A R   + +GVD  R+G  Y  S        PT    A A+  
Sbjct: 41  EKSVPDIDEDAATIAVEAARNAMIRSGVDPSRIGAVYTGSESHPYAVKPTSTIVAQAIGA 100

Query: 312 VPTIRPTSMNNSAQF-TLSVQFC 247
            P +       + +  T +VQ C
Sbjct: 101 TPQMTAADFEFACKAGTAAVQAC 123


>sp|P55027|TYRP1_AMBME 5,6-dihydroxyindole-2-carboxylic acid oxidase
           OS=Ambystoma mexicanum GN=TYRP1 PE=2 SV=2
          Length = 534

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -2

Query: 447 STAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALC 316
           ++ GR       VD    GP YP      R  WPT  F    LC
Sbjct: 58  ASVGRGRCAPLQVDARPHGPQYPHDGVDDREQWPTRFFNNSCLC 101


>sp|Q8TIV0|Y4041_METAC UPF0219 protein MA_4041 OS=Methanosarcina
           acetivorans GN=MA_4041 PE=3 SV=1
          Length = 349

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = -2

Query: 492 DSPIPDVISIDATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALCF 313
           +  +PDV    AT    A R     +GVD  R+G  Y  S        PT    A A+  
Sbjct: 41  EKSVPDVDEDAATIAVEAARYAMARSGVDPSRIGAVYTGSESHPYAVKPTSTIVAQAIGA 100

Query: 312 VPTIRPTSMNNSAQF-TLSVQFC 247
            P +       + +  T +VQ C
Sbjct: 101 TPEMTAADFEFACKAGTAAVQAC 123


>sp|P45403|CCMF_BRAJA Cytochrome c-type biogenesis protein cycK
           OS=Bradyrhizobium japonicum GN=cycK PE=3 SV=2
          Length = 660

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = -2

Query: 441 AGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALCFVPTIRPTSMNNSAQFTL 262
           AGRAT +  G      G   P SRE +      L+  ACA+    T+ P +M   A F +
Sbjct: 330 AGRATSLKQG------GLFAPISREGALVLNNLLLTVACAVVLFGTLYPLAMEMLADFKM 383

Query: 261 SV 256
           SV
Sbjct: 384 SV 385
tr_hit_id Q6VF42
Definition tr|Q6VF42|Q6VF42_9NEOB Tyrosinase (Fragment) OS=Leptodactylus fuscus
Align length 43
Score (bit) 34.7
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915521|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_F01.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6VF42|Q6VF42_9NEOB Tyrosinase (Fragment) OS=Leptodactylus fu...    35   2.8  
tr|A9JSV0|A9JSV0_DANRE Putative uncharacterized protein (Fragmen...    35   2.8  
tr|B6MH64|B6MH64_BRAFL Putative uncharacterized protein OS=Branc...    35   2.8  
tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein OS=Branc...    35   2.8  
tr|A1R6Q1|A1R6Q1_ARTAT Putative haloacid dehalogenase-like hydro...    34   4.8  
tr|Q50811|Q50811_MYCTU Putative uncharacterized protein OS=Mycob...    34   4.8  
tr|Q38D43|Q38D43_9TRYP Putative uncharacterized protein OS=Trypa...    34   4.8  
tr|A7KGK4|A7KGK4_9NEOB Tyrosinase (Fragment) OS=Microhyla pulchr...    33   6.2  
tr|B8GS27|B8GS27_9GAMM Phage-related lytic murein transglycosyla...    33   6.2  
tr|A7KGI9|A7KGI9_9NEOB Tyrosinase (Fragment) OS=Callulina krefft...    33   8.1  
tr|Q7DLM1|Q7DLM1_WHEAT (1,3;1,4) beta glucanase OS=Triticum aest...    33   8.1  
tr|Q2V6H6|Q2V6H6_WHEAT (1,3;1,4) beta-glucanase (Fragment) OS=Tr...    33   8.1  
tr|Q07556|Q07556_WHEAT Beta glucanase (Fragment) OS=Triticum aes...    33   8.1  
tr|Q2GUX9|Q2GUX9_CHAGB Putative uncharacterized protein OS=Chaet...    33   8.1  

>tr|Q6VF42|Q6VF42_9NEOB Tyrosinase (Fragment) OS=Leptodactylus
           fuscus GN=Tyr PE=4 SV=1
          Length = 193

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 444 TAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALC 316
           T+GR T     +    VGP +PFS    R  WPT+ +     C
Sbjct: 7   TSGRGTCQDVVLSNSPVGPQFPFSGIDDRENWPTVFYNRTCQC 49


>tr|A9JSV0|A9JSV0_DANRE Putative uncharacterized protein (Fragment)
           OS=Danio rerio PE=2 SV=1
          Length = 582

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -2

Query: 486 PIPDVISIDATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALC 316
           P P+ +  D    S  GR   +    DT   GP YP++    R +WP   FT    C
Sbjct: 97  PSPNGLGDDPCGASL-GRGQCVDVSADTRAHGPQYPYTGRDDRESWPRRFFTRACRC 152


>tr|B6MH64|B6MH64_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_123130 PE=4 SV=1
          Length = 2394

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 477 DVISIDATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALCFVPTIR 298
           DV   + T  + AG  TY  TG   L   P Y ++   ++ +   +V  ACA       R
Sbjct: 605 DVTDKEITAANKAGVCTYAVTGAQELEQ-PGYTWAMPTAKGSQQAMVCVACARAMRGNFR 663

Query: 297 PTSMNNSAQFTLSV 256
            T +N S  F+ ++
Sbjct: 664 LTKLNVSIPFSCAM 677


>tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_122198 PE=4 SV=1
          Length = 2935

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 477  DVISIDATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALCFVPTIR 298
            DV   + T  + AG  TY  TG   L   P Y ++   ++ +   +V  ACA       R
Sbjct: 1278 DVTDKEITAANKAGVCTYAVTGAQELEQ-PGYTWAMPTAKGSQQAMVCVACARAMRGNFR 1336

Query: 297  PTSMNNSAQFTLSV 256
             T +N S  F+ ++
Sbjct: 1337 LTKLNVSIPFSCAM 1350


>tr|A1R6Q1|A1R6Q1_ARTAT Putative haloacid dehalogenase-like
           hydrolase OS=Arthrobacter aurescens (strain TC1)
           GN=AAur_2171 PE=4 SV=1
          Length = 270

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 504 RPRLDSPIPDVISIDATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLV 337
           R RLD P   V +  A   S  G    +A+GV T+ +    P   +    TWPTLV
Sbjct: 190 RLRLDDPSVTVDNCVALEDSIPGATAAIASGVVTVGIPHQVPLPEDPRMITWPTLV 245


>tr|Q50811|Q50811_MYCTU Putative uncharacterized protein
           OS=Mycobacterium tuberculosis PE=4 SV=1
          Length = 175

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
 Frame = -2

Query: 489 SPIPDVISIDATRTSTA-----GRATYMATGVDT---LRVGPSYPFSRERSRNTWPTLVF 334
           SP    + +  + TS+A     G ++ ++  +DT   + VG  + FSR   R   P + F
Sbjct: 88  SPATSSVFLATSLTSSAPIFSYGSSSSISLAMDTPSLVIVGAPHFFSRTTLRPLGPNVTF 147

Query: 333 TACALCFVPTIRPTSMNNSAQFTLSV 256
           TA A  F P  RP   ++S    L++
Sbjct: 148 TASARAFKPRSRPRRASSSYAIVLAI 173


>tr|Q38D43|Q38D43_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb09.211.4670 PE=4 SV=1
          Length = 531

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 309 PTIRPTSMNNSAQFTLSVQFCCRNHAMGGSRDIIYFSHQPNSFQHP 172
           P     +M  S  F    + CC N ++G +RD   FSH P+  + P
Sbjct: 323 PDTDAAAMKPSETFFWETRLCCENISVGCTRDACRFSHDPDDGKRP 368


>tr|A7KGK4|A7KGK4_9NEOB Tyrosinase (Fragment) OS=Microhyla pulchra
           GN=TYR PE=4 SV=1
          Length = 194

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 441 AGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALC 316
           +GR T     + T  VGP +PFS    R  WP   +     C
Sbjct: 7   SGRGTCQDVVISTSPVGPQFPFSGVDDRENWPVFFYNRTCRC 48


>tr|B8GS27|B8GS27_9GAMM Phage-related lytic murein transglycosylase
           OS=Thioalkalivibrio sp. HL-EbGR7 GN=Tgr7_1648 PE=3 SV=1
          Length = 227

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 172 RVLEGVWLMAKVYNISRAAHGM-ISAAKLYRQSKLSRIVHRSWADSWHKAQSTSSKHQ 342
           R+L G+WL+A ++  S AAH   + AA    Q +L+R+V + W      A   +  HQ
Sbjct: 26  RLLIGLWLLAWLF--SEAAHAQALPAAAQQHQRELTRVVQQEWGMGGRVAVHAAQIHQ 81


>tr|A7KGI9|A7KGI9_9NEOB Tyrosinase (Fragment) OS=Callulina kreffti
           GN=TYR PE=4 SV=1
          Length = 209

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 459 ATRTSTAGRATYMATGVDTLRVGPSYPFSRERSRNTWPTLVFTACALC 316
           +T    +GR T     + T  VGP +PFS    R  WP + +     C
Sbjct: 6   STCGEASGRGTCQDVVLSTSPVGPQFPFSGIDDRENWPIIFYNRTCQC 53