BP915524 |
Clone id |
YMU001_000072_F04 |
Library |
YMU01 |
Length |
628 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000072_F04. |
Accession |
BP915524 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1761Contig1 |
Sequence |
GGAGTGATCCACAAGAGCCAACTTCTCGACTTTGGTCTTTTTCACTCTTTTCATAAATTC ATCATCATCTTCATCTGCATCATCTTCCATTTCATTGTCTGCTTCCTCAGAATCACTTCC GTCACCAGGAAGAATTCGCCCAGTGACAGACTTAGAAAGCACTTTCAAGGAAGTCTTGCC ATTAGAGGTGGCATACCCCTCCCTTTCCTTTGCAGGTCCAGCATGAGGAGGTGTAGCACT TTCAGCCCGAAGTGCTTCCTCTGCATTCAACTTCTCGACTTCTGGCAAAACCATCGAGTT CATGAAGGCATCAAGAGGATCAACATCATCCTCCTCAGCTGCAGCTGTTGCTAATGCAGC TGAAACATTAGCATTTGCTCGATCTCCTTCCATGATGGTGTCCACTTGTATATCTCTCAT AAAAATATCTCCACCATTCTCAATAGGACCAATGTCAATCTTCACTTTGTTCCCATCCGC ATCTTCTTCATCTGAGTCATCGCCTTCCAATGTCCATGCCTTACCACTATTAGGCTGAGC AGCTGAGGTGTCTCCTCTCTTTTTCATCTCCTCCTCCTCTTTCTTTCTCCGAAGCTCCTG CCACTCCTGAACTCTCCGGCGCCGTTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8H0U8 |
Definition |
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana |
Align length |
217 |
Score (bit) |
95.5 |
E-value |
2.0e-19 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0WM14 |
Definition |
tr|Q0WM14|Q0WM14_ARATH Putative RNA helicase (Fragment) OS=Arabidopsis thaliana |
Align length |
216 |
Score (bit) |
86.7 |
E-value |
1.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915524|Adiantum capillus-veneris mRNA, clone: YMU001_000072_F04. (628 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0WM14|Q0WM14_ARATH Putative RNA helicase (Fragment) OS=Arabi... 87 1e-15 tr|B8BAX3|B8BAX3_ORYSI Putative uncharacterized protein OS=Oryza... 81 5e-14 tr|A3BPV3|A3BPV3_ORYSJ Putative uncharacterized protein OS=Oryza... 81 5e-14 tr|A7P8T9|A7P8T9_VITVI Chromosome chr3 scaffold_8, whole genome ... 80 1e-13 tr|A9TSN9|A9TSN9_PHYPA Predicted protein OS=Physcomitrella paten... 79 3e-13 tr|A8MQH2|A8MQH2_ARATH Uncharacterized protein At1g20920.2 OS=Ar... 65 4e-09 tr|A3BPQ7|A3BPQ7_ORYSJ Putative uncharacterized protein OS=Oryza... 59 2e-07 tr|B8BAV6|B8BAV6_ORYSI Putative uncharacterized protein OS=Oryza... 58 4e-07 tr|A8JHQ1|A8JHQ1_CHLRE DnaJ-like protein OS=Chlamydomonas reinha... 38 0.57 tr|Q16HL1|Q16HL1_AEDAE DEAD box ATP-dependent RNA helicase OS=Ae... 36 1.7 tr|B0WGF2|B0WGF2_CULQU Putative uncharacterized protein OS=Culex... 35 3.7 tr|A5UTM8|A5UTM8_ROSS1 Phosphonate metabolism OS=Roseiflexus sp.... 35 4.8 tr|B8G9J6|B8G9J6_9CHLR Phosphonate metabolism OS=Chloroflexus ag... 35 4.8
>tr|Q0WM14|Q0WM14_ARATH Putative RNA helicase (Fragment) OS=Arabidopsis thaliana GN=At3g09620 PE=2 SV=1 Length = 632
Score = 86.7 bits (213), Expect = 1e-15 Identities = 73/216 (33%), Positives = 93/216 (43%), Gaps = 7/216 (3%) Frame = -2
Query: 627 KRRRRVQEWQELXXXXXXXXXXXRGDTSAAQPNSGKAWTLXXXXXXXXXXXGNKVKIDIG 448 KRRRRVQEWQEL +G P +GKAWTL Sbjct: 129 KRRRRVQEWQELKRQNEEAQIESKG------PETGKAWTLDGESDDEVKSDSEMDVDRDT 182
Query: 447 PIENGGDIFMRDIQVDTIME-----GDRXXXXXXXXXXXXXAEEDDVDPLDAFMNSMVLP 283 +ENGGD M + +T + GDR +ED++DPLDAFMN+MVLP Sbjct: 183 KLENGGDAKMVASENETAVTVSENGGDRAA------------DEDEIDPLDAFMNTMVLP 230
Query: 282 EVEKLNAEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRILPGDGXXXXX 103 EVEKL+ + + G + K +K+ GRI+ G+ Sbjct: 231 EVEKLSNIVI-----------DGILDFKMNGKETGDQAKKGFNKAALGRIIQGEDSDSDY 279
Query: 102 XXXXXXXXXXXXXXE--FMKRVKKTKVEKLALVDHS 1 + FMKRVKKTK EKL+LVDHS Sbjct: 280 SEPKSDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHS 315
>tr|B8BAX3|B8BAX3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27901 PE=4 SV=1 Length = 1049
Score = 81.3 bits (199), Expect = 5e-14 Identities = 77/224 (34%), Positives = 99/224 (44%), Gaps = 16/224 (7%) Frame = -2
Query: 624 RRRRVQEWQELXXXXXXXXXXXRGDT-------SAAQP-------NSGKAWTLXXXXXXX 487 RRRR++EWQE+ + + +AA P N+GK WTL Sbjct: 176 RRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDE 235
Query: 486 XXXXGNKVKIDIGPIENGGDIFMRDIQVDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDA 307 + K D +NGG + VD GD +ED++DPLDA Sbjct: 236 EGNQEDGKKSD----DNGGS-GAGAMDVDVPNGGDNANGANAM-------DEDEIDPLDA 283
Query: 306 FMNSMVLPEVEKLNAEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRILP 127 FMNSMVLPEV KL E++ A + + AK+ A +NG K K V GRI+ Sbjct: 284 FMNSMVLPEVAKL---ESMPAANVDDKNDKSAKD----AVTNGD---KKGPKKVMGRIIQ 333
Query: 126 GD--GXXXXXXXXXXXXXXXXXXXEFMKRVKKTKVEKLALVDHS 1 G+ EFMKRVKKTK EKLA+VDHS Sbjct: 334 GEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKTKAEKLAIVDHS 377
>tr|A3BPV3|A3BPV3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025075 PE=3 SV=1 Length = 1039
Score = 81.3 bits (199), Expect = 5e-14 Identities = 77/224 (34%), Positives = 99/224 (44%), Gaps = 16/224 (7%) Frame = -2
Query: 624 RRRRVQEWQELXXXXXXXXXXXRGDT-------SAAQP-------NSGKAWTLXXXXXXX 487 RRRR++EWQE+ + + +AA P N+GK WTL Sbjct: 176 RRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDE 235
Query: 486 XXXXGNKVKIDIGPIENGGDIFMRDIQVDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDA 307 + K D +NGG + VD GD +ED++DPLDA Sbjct: 236 EGNQEDGKKSD----DNGGS-GAGAMDVDVPNGGDNANGANAM-------DEDEIDPLDA 283
Query: 306 FMNSMVLPEVEKLNAEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRILP 127 FMNSMVLPEV KL E++ A + + AK+ A +NG K K V GRI+ Sbjct: 284 FMNSMVLPEVAKL---ESMPAANVDDKNDKSAKD----AVTNGD---KKGPKKVMGRIIQ 333
Query: 126 GD--GXXXXXXXXXXXXXXXXXXXEFMKRVKKTKVEKLALVDHS 1 G+ EFMKRVKKTK EKLA+VDHS Sbjct: 334 GEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKTKAEKLAIVDHS 377
>tr|A7P8T9|A7P8T9_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036305001 PE=4 SV=1 Length = 971
Score = 80.1 bits (196), Expect = 1e-13 Identities = 69/221 (31%), Positives = 87/221 (39%), Gaps = 12/221 (5%) Frame = -2
Query: 627 KRRRRVQEWQELXXXXXXXXXXXRGDTSAA-QPNSGKAWTLXXXXXXXXXXXGNKVKIDI 451 KRRRRVQEWQEL G+ + A +P SGK WTL + D+ Sbjct: 274 KRRRRVQEWQELKRKREESEREKLGEAANADEPKSGKTWTLEGESDDEDVAPTGNSETDL 333
Query: 450 GPIENG-------GDIFMRDIQ----VDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDAF 304 E+ GD D Q T+ GD ++++DPLDAF Sbjct: 334 NMDEDAKPTDNEVGDGMAIDSQNGTSASTLQNGDEGADG-----------DEEIDPLDAF 382
Query: 303 MNSMVLPEVEKLNAEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRILPG 124 MNSMVLPEVEKLN +A P+ P +E + Sbjct: 383 MNSMVLPEVEKLNNAAVSPTSNAVVPN--PLEEED------------------------- 415
Query: 123 DGXXXXXXXXXXXXXXXXXXXEFMKRVKKTKVEKLALVDHS 1 EFMKRVKKTK E+L++VDHS Sbjct: 416 -------------------DDEFMKRVKKTKAERLSIVDHS 437
>tr|A9TSN9|A9TSN9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_149955 PE=3 SV=1 Length = 1072
Score = 78.6 bits (192), Expect = 3e-13 Identities = 72/215 (33%), Positives = 92/215 (42%), Gaps = 6/215 (2%) Frame = -2
Query: 627 KRRRRVQEWQELXXXXXXXXXXXR------GDTSAAQPNSGKAWTLXXXXXXXXXXXGNK 466 KRRRRVQEWQEL R D ++ N+ K WTL Sbjct: 239 KRRRRVQEWQELRRRKDEEDRQKRESVQADADVVSSPKNAKKTWTLEGEDSDDEE----- 293
Query: 465 VKIDIGPIENGGDIFMRDIQVDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDAFMNSMVL 286 D ++GG R + D EE+++DPLDAFMNS+ + Sbjct: 294 ---DAVLPKSGGTTASR------VAAFDNGDLVMADFGGNGMEEEEEIDPLDAFMNSITI 344
Query: 285 PEVEKLNAEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRILPGDGXXXX 106 PEV +A E L A + P AK G N K +K +++ GRI+PGD Sbjct: 345 PEVSSTDAVE-LDAPESKPI---VAKSGSGKGQDNVK-PVKRNNRNTLGRIMPGD---DS 396
Query: 105 XXXXXXXXXXXXXXXEFMKRVKKTKVEKLALVDHS 1 EF+KRVKKTK EKLA+VDHS Sbjct: 397 ASEDEDDGEGDEDDDEFLKRVKKTKAEKLAIVDHS 431
>tr|A8MQH2|A8MQH2_ARATH Uncharacterized protein At1g20920.2 OS=Arabidopsis thaliana GN=At1g20920 PE=3 SV=1 Length = 828
Score = 64.7 bits (156), Expect = 4e-09 Identities = 52/150 (34%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Frame = -2
Query: 441 ENGGDIFMRDIQVDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDAFMNSMVLPEVEKLNA 262 EN GD M D++ +T +E+++DPLDAFMN+MVLPEVEK Sbjct: 10 ENDGDAKMVDLENETAATVSESGGDGAV-------DEEEIDPLDAFMNTMVLPEVEKF-- 60
Query: 261 EEALRAESATPPHAGPAK-EREGYATSNGKTSLKVLSKSVTGRILPGD--GXXXXXXXXX 91 A PP + + +G K +K++ GRI+ G+ Sbjct: 61 -----CNGAPPPAVNDGTLDSKMNGKESGDRPKKGFNKAL-GRIIQGEDSDSDYSEPKND 114
Query: 90 XXXXXXXXXXEFMKRVKKTKVEKLALVDHS 1 EFMKRVKKTK EKL+LVDHS Sbjct: 115 DDPSLDEDDEEFMKRVKKTKAEKLSLVDHS 144
>tr|A3BPQ7|A3BPQ7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025029 PE=4 SV=1 Length = 1574
Score = 59.3 bits (142), Expect = 2e-07 Identities = 66/219 (30%), Positives = 85/219 (38%), Gaps = 18/219 (8%) Frame = -2
Query: 624 RRRRVQEWQELXXXXXXXXXXXRGDTSAA------------QPNSGKAWTLXXXXXXXXX 481 RRRRV+EWQE + +A N+GK WTL Sbjct: 696 RRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEEG 755
Query: 480 XXGNKVKIDIGPIENGGDIFMRDIQVDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDAFM 301 + + ++GG I D E + EED++DPLDAFM Sbjct: 756 YKEDSQNAE----DDGG------ITADLPSEVN-------DANVAAPMEEDEIDPLDAFM 798
Query: 300 NSMVLPEVEKLN----AEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRI 133 +SMVLPEV KL + E++ A + + AK+ A SNG K K GRI Sbjct: 799 SSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKD----AVSNGD---KKGQKKAMGRI 851
Query: 132 LPGD--GXXXXXXXXXXXXXXXXXXXEFMKRVKKTKVEK 22 + GD EFMKRVKKTK K Sbjct: 852 MQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKERK 890
>tr|B8BAV6|B8BAV6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27844 PE=4 SV=1 Length = 238
Score = 58.2 bits (139), Expect = 4e-07 Identities = 65/216 (30%), Positives = 84/216 (38%), Gaps = 18/216 (8%) Frame = -2
Query: 624 RRRRVQEWQELXXXXXXXXXXXRGDTSAA------------QPNSGKAWTLXXXXXXXXX 481 RRRRV+EWQE + +A N+GK WTL Sbjct: 16 RRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEEG 75
Query: 480 XXGNKVKIDIGPIENGGDIFMRDIQVDTIMEGDRXXXXXXXXXXXXXAEEDDVDPLDAFM 301 + + ++GG I D E + EED++DPLDAFM Sbjct: 76 YKEDSQNAE----DDGG------ITADLPSEVN-------DANVAAPMEEDEIDPLDAFM 118
Query: 300 NSMVLPEVEKLN----AEEALRAESATPPHAGPAKEREGYATSNGKTSLKVLSKSVTGRI 133 +SMVLPEV KL + E++ A + + AK+ A SNG K K GRI Sbjct: 119 SSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKD----AVSNGD---KKGQKKAMGRI 171
Query: 132 LPGD--GXXXXXXXXXXXXXXXXXXXEFMKRVKKTK 31 + GD EFMKRVKKTK Sbjct: 172 MQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTK 207
>tr|A8JHQ1|A8JHQ1_CHLRE DnaJ-like protein OS=Chlamydomonas reinhardtii GN=DNJ16 PE=4 SV=1 Length = 415
Score = 37.7 bits (86), Expect = 0.57 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -2
Query: 330 DDVDPLDAFMNSMVLPEVEKLNAEEALRAESATPPHAGPAKEREGYATSNGK-TSLKVLS 154 DD DPLDAFM + VLPEV++ A+E R + A +G G SLK+L Sbjct: 133 DDEDPLDAFMAAEVLPEVKQRQAQEEARRQEERRKMAEQLASGKGEKGRGGALPSLKLLE 192
Query: 153 K 151 + Sbjct: 193 E 193
>tr|Q16HL1|Q16HL1_AEDAE DEAD box ATP-dependent RNA helicase OS=Aedes aegypti GN=AAEL013985 PE=3 SV=1 Length = 1029
Score = 36.2 bits (82), Expect = 1.7 Identities = 23/53 (43%), Positives = 26/53 (49%) Frame = -2
Query: 336 EEDDVDPLDAFMNSMVLPEVEKLNAEEALRAESATPPHAGPAKEREGYATSNG 178 EEDDVDPLDAFM V EV K+N + S+ P G A G G Sbjct: 220 EEDDVDPLDAFMKE-VNEEVRKVN-----KLPSSAPKQDGKAASNSGVTIITG 266
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