NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915534
Clone id YMU001_000072_G04
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGTGACAGATTGCAGGTACTAGAGAATACTACCCAACAAGTAATATCAAAACTAGGAAT
TCAAGCTAGCTACTAAGGTAACCCGGTTTTGATTTTGCAATACCAATTCTTCATGAATTT
GCGATCAGGGAGATTGTACCAGAATAGAAATCCCAGCATCTTAGACCAAGGGAGCAATCA
CTCTATTGAAGGAAGCATGAATCAAAGACCACTGTATCCTTTAGAACCCATTCTAGAGGA
AATTGTTTCTGACACCTCGTCAGAAAGATCATATAGCCTAATGATTGAGGATTCCAACAA
GTTGAATCCTAAGGAAACAACTTCCATGGGGGCAGGTCCTTCTCAACCTGCATCTGATAT
AAAACTGCTGTATTTGAAGTTTCAATTTGAAAATGTGCTTAAGGCCAAAATTTATAAGGA
TGGAATGGACCGCTATTGTGTTAAGCTGGAAAATAAGCCAAGCGAGTTCAAAGACCTTGT
AGATGTGGATTATGACTGAAGGAGTACGAGCGGAAGTGCGACGCGAGAGAGAGAGTGCGA
GAAGAAGAGCACGACAATATGGTGAACTCGCTCTCTACTGTAATG
■■Homology search results ■■ -
sp_hit_id P78347
Definition sp|P78347|GTF2I_HUMAN General transcription factor II-I OS=Homo sapiens
Align length 79
Score (bit) 35.0
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915534|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_G04.
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P78347|GTF2I_HUMAN General transcription factor II-I OS=Homo ...    35   0.27 
sp|Q54TB2|Y4266_DICDI Putative uncharacterized transmembrane pro...    34   0.61 
sp|Q5U2Y1|GTF2I_RAT General transcription factor II-I OS=Rattus ...    34   0.61 
sp|Q9ESZ8|GTF2I_MOUSE General transcription factor II-I OS=Mus m...    34   0.61 
sp|A3LV40|DBP9_PICST ATP-dependent RNA helicase DBP9 OS=Pichia s...    33   1.4  
sp|Q5A4P9|DBP9_CANAL ATP-dependent RNA helicase DBP9 OS=Candida ...    33   1.4  
sp|P75136|Y655_MYCPN UPF0134 protein MPN_655 OS=Mycoplasma pneum...    32   1.8  
sp|A5E572|DBP9_LODEL ATP-dependent RNA helicase DBP9 OS=Lodderom...    32   1.8  
sp|P78714|WC2_NEUCR White collar 2 protein OS=Neurospora crassa ...    32   3.0  
sp|Q10480|PNU1_SCHPO Nuclease 1, mitochondrial OS=Schizosaccharo...    32   3.0  
sp|Q6ZSZ6|TSH1_HUMAN Teashirt homolog 1 OS=Homo sapiens GN=TSHZ1...    31   3.9  
sp|Q5DRE9|PCDA3_PANTR Protocadherin alpha-3 OS=Pan troglodytes G...    31   5.2  
sp|Q9Y5H8|PCDA3_HUMAN Protocadherin alpha-3 OS=Homo sapiens GN=P...    31   5.2  
sp|Q6BLM5|DBP9_DEBHA ATP-dependent RNA helicase DBP9 OS=Debaryom...    31   5.2  
sp|Q4L6T2|HRCA_STAHJ Heat-inducible transcription repressor hrcA...    30   6.7  
sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidop...    30   6.7  
sp|Q7RX59|ATM1_NEUCR Iron-sulfur clusters transporter atm-1, mit...    30   6.7  

>sp|P78347|GTF2I_HUMAN General transcription factor II-I OS=Homo
           sapiens GN=GTF2I PE=1 SV=2
          Length = 998

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +2

Query: 167 QGSNHSIEGSMNQRPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGPS- 343
           QGS+HS EG+       P E   + + S+TS +    + IED +   P +       P  
Sbjct: 274 QGSHHSSEGNEGTEMEVPAEDSTQHVPSETSEDPEVEVTIEDDDYSPPSKRPKANELPQP 333

Query: 344 ---QPASDIKLLYLKFQFE 391
              +PA+  K    +F FE
Sbjct: 334 PVPEPANAGKRKVREFNFE 352


>sp|Q54TB2|Y4266_DICDI Putative uncharacterized transmembrane
           protein DDB_G0281883 OS=Dictyostelium discoideum
           GN=DDB_G0281883 PE=4 SV=1
          Length = 234

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 28/109 (25%), Positives = 48/109 (44%)
 Frame = +2

Query: 230 ILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGPSQPASDIKLLYLKFQFENVLKAK 409
           ILE  + D S  ++ SL    S+   P+ ++S  +  S   S +    +     +++K++
Sbjct: 92  ILENSMKDASHSKTTSLPFSSSS---PQSSSSSSSSSSSSNSSLSCSLIFSSTLSLIKSE 148

Query: 410 IYKDGMDRYCVKLENKPSEFKDLVDVDYD*RSTSGSATRERECEKKSTT 556
           + KD   +Y        SEF    + D+D  S S     E E E KS +
Sbjct: 149 LIKDDTIKYSESDSKSDSEFDSESNSDFDSESES-EYEYEYEYESKSNS 196


>sp|Q5U2Y1|GTF2I_RAT General transcription factor II-I OS=Rattus
           norvegicus GN=Gtf2i PE=2 SV=2
          Length = 979

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 167 QGSNHSIEGSMNQRPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGPSQ 346
           QGS+HS EG+       P E   + + S+TS +    + IED +   P +       P  
Sbjct: 254 QGSHHSSEGNEGAEVEVPAEDSTQHVPSETSEDPEVEVTIEDDDYSPPTKRPKSSEPPPP 313

Query: 347 P 349
           P
Sbjct: 314 P 314


>sp|Q9ESZ8|GTF2I_MOUSE General transcription factor II-I OS=Mus
           musculus GN=Gtf2i PE=1 SV=3
          Length = 998

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +2

Query: 167 QGSNHSIEGSMNQRPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGP-- 340
           QGS+HS EG+       P E   + + S+TS +    + IED +   P +       P  
Sbjct: 273 QGSHHSSEGNEGTEVEVPAEDSTQHVPSETSEDPEVEVTIEDDDYSPPTKRLKSTEPPPP 332

Query: 341 ---SQPASDIKLLYLKFQFE 391
               +PA+  K    +F FE
Sbjct: 333 PPVPEPANAGKRKVREFNFE 352


>sp|A3LV40|DBP9_PICST ATP-dependent RNA helicase DBP9 OS=Pichia
           stipitis GN=DBP9 PE=3 SV=1
          Length = 581

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 472 FELAWLIFQLNTIAVHSILINFGLKHIFKLKLQIQQFYIRC 350
           F LA++IF+LN I   +++    +   ++LKL ++QF IRC
Sbjct: 256 FLLAYVIFKLNLIKGKTLVFVNNIDRGYRLKLFLEQFGIRC 296


>sp|Q5A4P9|DBP9_CANAL ATP-dependent RNA helicase DBP9 OS=Candida
           albicans GN=DBP9 PE=3 SV=1
          Length = 574

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -3

Query: 472 FELAWLIFQLNTIAVHSILINFGLKHIFKLKLQIQQFYIRC 350
           F LA++IF+LN I   +I     +   ++LKL ++QF IRC
Sbjct: 249 FLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGIRC 289


>sp|P75136|Y655_MYCPN UPF0134 protein MPN_655 OS=Mycoplasma
           pneumoniae GN=MPN_655 PE=3 SV=1
          Length = 204

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +2

Query: 287 EDSNKLNPKETTSMGAGPSQPASDIKLLYLKFQFENVLKAKIYKDGMDRYCVKLENKPSE 466
           E  +   PKET   G GP  P +  K +    ++    +   +KD  ++   K+ENK  +
Sbjct: 85  EPDSPEEPKETDQPG-GPDNPNAGNKKMPTPEEYVTRKEFNEFKDSNNQRLTKIENKVDK 143

Query: 467 FKDLVDVDYD*RSTSGSATRERECEKKS 550
            +  VD   +   T G   +E + E+K+
Sbjct: 144 LEVKVDKLAEIVQTQGEEIKELKVEQKA 171


>sp|A5E572|DBP9_LODEL ATP-dependent RNA helicase DBP9
           OS=Lodderomyces elongisporus GN=DBP9 PE=3 SV=1
          Length = 606

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 472 FELAWLIFQLNTIAVHSILINFGLKHIFKLKLQIQQFYIRC 350
           F L+++IF+LN I   +I+    +   ++LKL ++QF IRC
Sbjct: 257 FLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGIRC 297


>sp|P78714|WC2_NEUCR White collar 2 protein OS=Neurospora crassa
           GN=wc-2 PE=1 SV=1
          Length = 530

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
 Frame = +2

Query: 131 RLYQNRNPSILDQGSNHSIEGSMNQRPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNP 310
           R Y  +N  +LD    H IE    +R +  L    EE      S R++ +  E  + + P
Sbjct: 283 RPYPTKNAGLLDSFLEHKIENERLKRRIAELR--REEQEEQEESHRTWRMSQEGRSDVTP 340

Query: 311 KETTSMGAG------------------PSQPASDIKLLYLKFQFENV 397
            + T+   G                  PSQPAS + +   +   E +
Sbjct: 341 SDDTATQMGMTPFYIPMNAQADVMMPPPSQPASSLNIALTRENLEGI 387


>sp|Q10480|PNU1_SCHPO Nuclease 1, mitochondrial
           OS=Schizosaccharomyces pombe GN=pnu1 PE=2 SV=2
          Length = 322

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
 Frame = +2

Query: 158 ILDQGSNHSIEGSMNQR---PLYPLEPILEEIVSDTSSERSYSLMIEDSN-------KLN 307
           + DQ  NH      ++R   P Y  E I +E ++     R YS  + D N       KL 
Sbjct: 72  VADQRVNHGYMSVFDRRTRNPFYTAETITQESLNQRKGNRRYSEFVPDDNIPEMFQAKLG 131

Query: 308 PKETTSMGAGPSQPASDIK 364
               +    G   PA+D K
Sbjct: 132 DYRGSGYDRGHQVPAADCK 150
tr_hit_id A6EG68
Definition tr|A6EG68|A6EG68_9SPHI Positive regulator of sigma-B OS=Pedobacter sp. BAL39
Align length 120
Score (bit) 41.6
E-value 0.033
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915534|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_G04.
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6EG68|A6EG68_9SPHI Positive regulator of sigma-B OS=Pedobact...    42   0.033
tr|P78616|P78616_EMENI Fatty acid synthase, beta subunit OS=Emer...    35   2.4  
tr|A5E2T9|A5E2T9_LODEL Putative uncharacterized protein OS=Lodde...    35   2.4  
tr|B4DH52|B4DH52_HUMAN cDNA FLJ55916, highly similar to General ...    35   3.1  
tr|A8K9W7|A8K9W7_HUMAN cDNA FLJ77440, highly similar to Homo sap...    35   3.1  
tr|A3FQD9|A3FQD9_CRYPV Putative uncharacterized protein OS=Crypt...    34   5.2  
tr|Q5CL90|Q5CL90_CRYHO Putative uncharacterized protein OS=Crypt...    34   6.9  
tr|Q5CHV9|Q5CHV9_CRYHO Putative uncharacterized protein OS=Crypt...    34   6.9  
tr|Q5CVY0|Q5CVY0_CRYPV CDC45 like protein, possible horizontal t...    33   9.0  

>tr|A6EG68|A6EG68_9SPHI Positive regulator of sigma-B OS=Pedobacter
           sp. BAL39 GN=PBAL39_07440 PE=4 SV=1
          Length = 313

 Score = 41.6 bits (96), Expect = 0.033
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
 Frame = +2

Query: 95  LQYQFFMNLRSGRLYQNRNPSILDQGSNHSIEGS-------MNQRPLYPLEPILEEIVSD 253
           L YQF M+L S +L QN+  +IL++  N+ +           N+   Y  E +++ +VS+
Sbjct: 22  LAYQFTMSLNSYKLLQNKKKNILEKWMNNQLSDEGLREDLISNEELRYQSEELIDALVSN 81

Query: 254 TSSERSYSLMIEDSNK----LNPKETTSMGAGPSQPASDIKLLYLKFQFENVLKAKIYKD 421
            S E    LM E+ N     L+    T    G S   +   +  LK    NVL+ +I +D
Sbjct: 82  LSGESFSDLMSEEWNSVIEILSGISITRARQGFSPRETGNFVFTLKEALLNVLQEEIGED 141


>tr|P78616|P78616_EMENI Fatty acid synthase, beta subunit
            OS=Emericella nidulans GN=fasB PE=4 SV=1
          Length = 2091

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 188  EGSMNQ---RPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGPSQPASD 358
            +GS  Q     LY   P+ +E+    S   +Y L I D  K NPKE T    GP   A  
Sbjct: 1695 QGSQEQGMGMELYATSPVAKEVWDRPSFHWNYGLSIIDIVKNNPKERTVHFGGPRGKA-- 1752

Query: 359  IKLLYLKFQFENV 397
            I+  Y+   FE V
Sbjct: 1753 IRQNYMSMTFETV 1765


>tr|A5E2T9|A5E2T9_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_03926 PE=4 SV=1
          Length = 1068

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
 Frame = +2

Query: 215 YPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKE--------TTSMGAGPSQPASDIKLL 370
           Y  EP+ E+I  DT  +    L I D  KL  KE        TT +    S    D+ L 
Sbjct: 233 YNAEPLAEQIEEDTFEKIMTELNI-DIKKLKMKESDIDNEVQTTPINGANSLVDIDLNLD 291

Query: 371 YLKFQFENVLKAKIYKDGMDRYCVKLENKPSEFKDLVDVDYD*RSTSGSATRERECEK 544
            L+ Q +   K K  K+   +   K +  P +F D    D+       S    +EC K
Sbjct: 292 SLEKQKKKKKKKKKNKETESKITAKKQGTPPDFSDKSSGDFGDIGEKDSKILAKECRK 349


>tr|B4DH52|B4DH52_HUMAN cDNA FLJ55916, highly similar to General
           transcription factor II-I OS=Homo sapiens PE=2 SV=1
          Length = 993

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +2

Query: 167 QGSNHSIEGSMNQRPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGPS- 343
           QGS+HS EG+       P E   + + S+TS +    + IED +   P +       P  
Sbjct: 269 QGSHHSSEGNEGTEMEVPAEDSTQHVPSETSEDPEVEVTIEDDDYSPPSKRPKANELPQP 328

Query: 344 ---QPASDIKLLYLKFQFE 391
              +PA+  K    +F FE
Sbjct: 329 PVPEPANAGKRKVREFNFE 347


>tr|A8K9W7|A8K9W7_HUMAN cDNA FLJ77440, highly similar to Homo
           sapiens general transcription factor II, i (GTF2I),
           transcript variant 2, mRNA OS=Homo sapiens PE=2 SV=1
          Length = 978

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +2

Query: 167 QGSNHSIEGSMNQRPLYPLEPILEEIVSDTSSERSYSLMIEDSNKLNPKETTSMGAGPS- 343
           QGS+HS EG+       P E   + + S+TS +    + IED +   P +       P  
Sbjct: 254 QGSHHSSEGNEGTEMEVPAEDSTQHVPSETSEDPEVEVTIEDDDYSPPSKRPKANELPQP 313

Query: 344 ---QPASDIKLLYLKFQFE 391
              +PA+  K    +F FE
Sbjct: 314 PVPEPANAGKRKVREFNFE 332


>tr|A3FQD9|A3FQD9_CRYPV Putative uncharacterized protein
           OS=Cryptosporidium parvum Iowa II GN=cgd1_2100 PE=4 SV=1
          Length = 349

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 496 VIIHIYKVFELAWLIFQLNTIAVHSILINFGLKHIFKLKLQIQQ 365
           VII  Y V EL  L   L   +VH+IL  FGL  IF L+  +Q+
Sbjct: 257 VIIMTYYVLELLLLNINLRKYSVHNILFIFGLTTIFFLEFFVQR 300


>tr|Q5CL90|Q5CL90_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.80279 PE=4 SV=1
          Length = 706

 Score = 33.9 bits (76), Expect = 6.9
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
 Frame = +2

Query: 53  LGIQASY*GNPVLIL---QYQFFMNLRSGRLYQNRNPSILDQG-SNHSIEGSMNQRPLYP 220
           L I  +Y  N +LIL   +Y F +N +SGR    +N S    G +N S     +  P   
Sbjct: 136 LSIGGNYNNNNILILSIQEYNFLVNSKSGRKKSRKNSSNPSDGQTNESSSTFSSNNPFAS 195

Query: 221 LEPILE--EIVSDTSS--ERSYSLMIED 292
           L   ++  +I+  TS+   +SY+  IED
Sbjct: 196 LSQTIDDLDILMGTSNGESQSYNEQIED 223


>tr|Q5CHV9|Q5CHV9_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.10240 PE=4 SV=1
          Length = 349

 Score = 33.9 bits (76), Expect = 6.9
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -3

Query: 496 VIIHIYKVFELAWLIFQLNTIAVHSILINFGLKHIFKLKLQIQQ 365
           VII  Y V EL  L   L   +VH+IL  FGL  IF L+  +Q+
Sbjct: 257 VIIITYYVLELLLLNINLRKYSVHNILFIFGLTTIFFLEFFVQR 300


>tr|Q5CVY0|Q5CVY0_CRYPV CDC45 like protein, possible horizontal
           transfer OS=Cryptosporidium parvum Iowa II GN=cgd8_2380
           PE=4 SV=1
          Length = 706

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
 Frame = +2

Query: 53  LGIQASY*GNPVLIL---QYQFFMNLRSGRLYQNRNPSILDQG-SNHSIEGSMNQRPLYP 220
           L I  +Y  N VLIL   +Y F +N +SGR    +N S    G +N S     +  P   
Sbjct: 136 LTIGGNYNNNNVLILSIQEYNFLVNSKSGRKKSRKNSSNPSDGQTNESSSTFSSNNPFAS 195

Query: 221 LEPILE--EIVSDTSS--ERSYSLMIED 292
           L   ++  +I+  TS+   +SY+  IED
Sbjct: 196 LSQTIDDLDILMGTSNGESQSYNEQIED 223