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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915538
Clone id YMU001_000072_G08
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGACACACACACACACACCAATATCTGCGCCCCCCCTGATCCCAGACAGCCAAGTGACA
ATGGCATCCAAATATGGGGGCTCATCAGCAACCTCCCCGAGGTCGACTTCGTCGTCGTCG
ATGGCGGGGGGAGGCGGGATGGAGGGGCACAAGCCGCAGTGCGTGTGTGCCCCAACAACT
CATGAAGGATCATTCCGATGCCGTCTGCATCGGTCGTCGTCATCATAAGAAGTGGGACAA
GATGACGTCTGCTAACACAACCCCAGCTACAACCTCCCGCCACCATCGAGGCGCAGTAGC
CCCAGCTCCTTATATAGTCCTTTTGCCAAGGAGGTTACATACTCTTTATTCCTCTCAAAA
GGATGCATAATCTTGATCAATATCTCTGGCTGTATTCTTTGGTTACTACGCAATTCCCCA
CAATTGTACATCCTTTGCCACCTTTGCCCATCACATGTAGATGATGCGCATACTAATCTC
TTGA
■■Homology search results ■■ -
sp_hit_id O87393
Definition sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium meliloti
Align length 13
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915538|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_G08.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium melilo...    31   3.4  
sp|A1RE25|FPG_SHESW Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   5.7  
sp|A3QJA8|FPG_SHELP Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   5.7  
sp|A6WUE9|FPG_SHEB8 Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   5.7  
sp|A3CYP7|FPG_SHEB5 Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   5.7  
sp|A4FBL9|UVRC_SACEN UvrABC system protein C OS=Saccharopolyspor...    30   5.7  
sp|Q0HPK4|FPG_SHESR Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   7.5  
sp|Q0HDC3|FPG_SHESM Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   7.5  
sp|A0L2N2|FPG_SHESA Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   7.5  
sp|A8HA27|FPG_SHEPA Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   7.5  
sp|Q8E8D9|FPG_SHEON Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   7.5  
sp|Q12SR9|FPG_SHEDO Formamidopyrimidine-DNA glycosylase OS=Shewa...    30   7.5  

>sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium meliloti
           GN=glnT PE=3 SV=1
          Length = 435

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 69  GCHCHLAVWDQGG 31
           GCHCH++VWD  G
Sbjct: 234 GCHCHISVWDLAG 246


>sp|A1RE25|FPG_SHESW Formamidopyrimidine-DNA glycosylase
           OS=Shewanella sp. (strain W3-18-1) GN=mutM PE=3 SV=1
          Length = 271

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +      QR
Sbjct: 231 FAQKLHVYGRGGETCTSCGNLLSEIRLGQR 260


>sp|A3QJA8|FPG_SHELP Formamidopyrimidine-DNA glycosylase
           OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
           GN=mutM PE=3 SV=1
          Length = 271

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +   +  QR
Sbjct: 231 FAQKLHVYGRGGETCTQCGNLLSEIKLGQR 260


>sp|A6WUE9|FPG_SHEB8 Formamidopyrimidine-DNA glycosylase
           OS=Shewanella baltica (strain OS185) GN=mutM PE=3 SV=1
          Length = 271

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +      QR
Sbjct: 231 FAQKLHVYGRGGETCTSCGNLLSEIRLGQR 260


>sp|A3CYP7|FPG_SHEB5 Formamidopyrimidine-DNA glycosylase
           OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
           GN=mutM PE=3 SV=1
          Length = 271

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +      QR
Sbjct: 231 FAQKLHVYGRGGETCTSCGNLLSEIRLGQR 260


>sp|A4FBL9|UVRC_SACEN UvrABC system protein C OS=Saccharopolyspora
           erythraea (strain NRRL 23338) GN=uvrC PE=3 SV=1
          Length = 717

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 92  VADEPPYLDAIVTWLSGIRGG 30
           V + PP  +AI  WLSG+RGG
Sbjct: 332 VPELPPECEAITEWLSGLRGG 352


>sp|Q0HPK4|FPG_SHESR Formamidopyrimidine-DNA glycosylase
           OS=Shewanella sp. (strain MR-7) GN=mutM PE=3 SV=1
          Length = 271

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +      QR
Sbjct: 231 FAQKLHVYGRGGETCTQCGNLLSEIRLGQR 260


>sp|Q0HDC3|FPG_SHESM Formamidopyrimidine-DNA glycosylase
           OS=Shewanella sp. (strain MR-4) GN=mutM PE=3 SV=1
          Length = 271

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +      QR
Sbjct: 231 FAQKLHVYGRGGETCTQCGNLLSEIRLGQR 260


>sp|A0L2N2|FPG_SHESA Formamidopyrimidine-DNA glycosylase
           OS=Shewanella sp. (strain ANA-3) GN=mutM PE=3 SV=1
          Length = 271

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GG+ CT  GN +      QR
Sbjct: 231 FAQKLHVYGRGGETCTQCGNLLSEIRLGQR 260


>sp|A8HA27|FPG_SHEPA Formamidopyrimidine-DNA glycosylase
           OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
           GN=mutM PE=3 SV=1
          Length = 271

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 472 YAHHLHVMGKGGKGCTIVGNCVVTKEYSQR 383
           +A  LHV G+GGK CT  G+ +   +  QR
Sbjct: 231 FAQKLHVYGRGGKTCTQCGHMLSEIKLGQR 260
tr_hit_id B6SH36
Definition tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 25
Score (bit) 51.2
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915538|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_G08.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea m...    51   2e-05
tr|B6TQA4|B6TQA4_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|Q7XSC7|Q7XSC7_ORYSJ OSJNBb0118P14.9 protein OS=Oryza sativa s...    49   2e-04
tr|Q7F8W7|Q7F8W7_ORYSJ OJ000315_02.4 protein OS=Oryza sativa sub...    49   2e-04
tr|Q01L50|Q01L50_ORYSA H0502B11.1 protein OS=Oryza sativa GN=H05...    49   2e-04
tr|B6U7D5|B6U7D5_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_15...    48   2e-04
tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa ...    47   6e-04
tr|Q7F8Y8|Q7F8Y8_ORYSJ OSJNBb0116K07.4 protein OS=Oryza sativa s...    47   6e-04
tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea...    47   6e-04
tr|A3AVC8|A3AVC8_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A2XVA5|A2XVA5_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A9NW60|A9NW60_PICSI Putative uncharacterized protein OS=Picea...    46   8e-04
tr|A9NRP8|A9NRP8_PICSI Putative uncharacterized protein OS=Picea...    46   8e-04
tr|Q9ZTM9|Q9ZTM9_PETHY PGPS/D10 OS=Petunia hybrida GN=PGPS/D10 P...    45   0.002
tr|Q9C9V7|Q9C9V7_ARATH Putative uncharacterized protein T23K23.2...    45   0.002
tr|Q6H886|Q6H886_ORYSJ Putative uncharacterized protein OJ1572_F...    45   0.002
tr|A7QXY0|A7QXY0_VITVI Chromosome undetermined scaffold_235, who...    45   0.002
tr|A5AWM3|A5AWM3_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A2YEW1|A2YEW1_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2X1P3|A2X1P3_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q69V63|Q69V63_ORYSJ Os06g0608000 protein OS=Oryza sativa subs...    44   0.003
tr|Q5ZF84|Q5ZF84_PLAMJ Putative uncharacterized protein OS=Plant...    44   0.003
tr|A9PHV6|A9PHV6_POPTR Putative uncharacterized protein OS=Popul...    44   0.003
tr|A3BDF7|A3BDF7_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.003
tr|Q0E0T0|Q0E0T0_ORYSJ Os02g0525600 protein OS=Oryza sativa subs...    44   0.005
tr|B8AIR0|B8AIR0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|B6UD28|B6UD28_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005
tr|B6TFV2|B6TFV2_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005

>tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 113

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +1

Query: 148 HKPQCVCAPTTHEGSFRCRLHRSSS 222
           H P+CVCAP TH GSF+CRLHRSSS
Sbjct: 50  HAPKCVCAPATHAGSFKCRLHRSSS 74


>tr|B6TQA4|B6TQA4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 108

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +1

Query: 148 HKPQCVCAPTTHEGSFRCRLHRSSS 222
           H P+CVCAP TH GSF+CRLHRSSS
Sbjct: 45  HGPKCVCAPATHAGSFKCRLHRSSS 69


>tr|Q7XSC7|Q7XSC7_ORYSJ OSJNBb0118P14.9 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0118P14.9 PE=4 SV=2
          Length = 108

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 154 PQCVCAPTTHEGSFRCRLHRSSS 222
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 57  PKCVCAPATHAGSFKCRLHRSSS 79


>tr|Q7F8W7|Q7F8W7_ORYSJ OJ000315_02.4 protein OS=Oryza sativa subsp.
           japonica GN=OJ000315_02.4 PE=4 SV=1
          Length = 175

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 154 PQCVCAPTTHEGSFRCRLHRSSS 222
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 124 PKCVCAPATHAGSFKCRLHRSSS 146


>tr|Q01L50|Q01L50_ORYSA H0502B11.1 protein OS=Oryza sativa
           GN=H0502B11.1 PE=4 SV=1
          Length = 108

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 154 PQCVCAPTTHEGSFRCRLHRSSS 222
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 57  PKCVCAPATHAGSFKCRLHRSSS 79


>tr|B6U7D5|B6U7D5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 105

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 154 PQCVCAPTTHEGSFRCRLHRSSS 222
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 58  PKCVCAPATHAGSFKCRLHRSSS 80


>tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_150
           OS=Arabidopsis thaliana GN=T5P19_150 PE=4 SV=1
          Length = 110

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 151 KPQCVCAPTTHEGSFRCRLHRSSSS 225
           K  C+CAPT HEGSFRCRLHRSS++
Sbjct: 62  KTVCICAPTKHEGSFRCRLHRSSAT 86


>tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93133 PE=4 SV=1
          Length = 429

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +1

Query: 160 CVCAPTTHEGSFRCRLHRSSS 222
           C+CAPTTH GSFRCRLHRSSS
Sbjct: 126 CLCAPTTHAGSFRCRLHRSSS 146


>tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa
           GN=OSJNBa0014K14.12 PE=4 SV=3
          Length = 121

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 157 QCVCAPTTHEGSFRCRLHR 213
           QC+C+PTTHEGSFRCRLHR
Sbjct: 25  QCICSPTTHEGSFRCRLHR 43


>tr|Q7F8Y8|Q7F8Y8_ORYSJ OSJNBb0116K07.4 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0116K07.4 PE=4 SV=1
          Length = 121

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 157 QCVCAPTTHEGSFRCRLHR 213
           QC+C+PTTHEGSFRCRLHR
Sbjct: 25  QCICSPTTHEGSFRCRLHR 43