NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915539
Clone id YMU001_000072_G09
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCCAGATCTTGCTTGTCACAGATTTCCCGNGAGAAGCAACGAATCAAAATTGTTTTGGT
GGCAGTCACTTCCGTTTTTGGAAACTACCAAGTTTTTATAGAATTTGAAAAACCTAACTA
AATCTTGCGGATACCTACCCCCACGAACCACTTGAATCCCTTCAGTTTCCCCTTGAATCT
ATCCCCGCCAAATAGTAGGGAATCCCTCCTCATTATGCGTGCCTTCCACCTACCGGAAGG
CAAGGGAGTCGTGACATCATAACGGATTTCTCTTTCCTCCTTTGAAGAACTTGCAGAAAT
TGAAATATCTTTGTTCAAACCTAAGTAGTAGGGCTCCAGTATTTCTCTCTTCCCATCTCT
TCCGACGGATAAAAATCTCTTGAATTGGAGGAAGCAATCGTAGGAGAAATTGCCATAATT
TTCCGTCTGTTTCTTTCTTATCCCCTCACCTCCATCAATGACTTTTGCTAATACAAAACC
CCTATCAATCGAATTTTTGTAACTCAGGCAATGCATAAAAATTGGTATCGCCAGCAACAT
C
■■Homology search results ■■ -
sp_hit_id Q85B60
Definition sp|Q85B60|YCF2_ADICA Protein ycf2 OS=Adiantum capillus-veneris
Align length 180
Score (bit) 268.0
E-value 1.0e-71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915539|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_G09.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85B60|YCF2_ADICA Protein ycf2 OS=Adiantum capillus-veneris G...   268   1e-71
sp|Q9YAD3|TRM56_AERPE tRNA ribose 2'-O-methyltransferase aTrm56 ...    33   0.90 
sp|Q8HUG9|RPC1A_CHLRE DNA-directed RNA polymerase subunit beta' ...    32   2.0  
sp|A4XI64|RNPH_CALS8 Ribonuclease PH OS=Caldicellulosiruptor sac...    32   2.0  
sp|A4GGE1|YCF2_PHAVU Protein ycf2 OS=Phaseolus vulgaris GN=ycf2-...    32   2.6  
sp|O06458|TRES_THETH Trehalose synthase OS=Thermus thermophilus ...    30   5.8  
sp|P87239|MDJ1_SCHPO DnaJ homolog 1, mitochondrial OS=Schizosacc...    30   7.6  

>sp|Q85B60|YCF2_ADICA Protein ycf2 OS=Adiantum capillus-veneris
           GN=ycf2-A PE=2 SV=2
          Length = 2104

 Score =  268 bits (686), Expect = 1e-71
 Identities = 140/180 (77%), Positives = 145/180 (80%)
 Frame = -2

Query: 540 MLLAIPIFMHCLSYKNSIDRGFVLAKVIDGGEGIRKKQTENYGNFSYDCFLQFKRFLSVG 361
           MLLAIPIFMHCLSYKNSIDRGFVLAKVIDGGEGIRKKQTENYGNFSYDCFLQFKRFLSVG
Sbjct: 89  MLLAIPIFMHCLSYKNSIDRGFVLAKVIDGGEGIRKKQTENYGNFSYDCFLQFKRFLSVG 148

Query: 360 RDGKREILEPYYLGLNKDISISASSSKEEREIRYDVTTPLPSGRWKARIMRRDSLLFGGD 181
           RDGKREILEPYYLGLNKDISISASSSKEEREIRYDVTTPLPSGRWKARIMRRDSLLFGGD
Sbjct: 149 RDGKREILEPYYLGLNKDISISASSSKEEREIRYDVTTPLPSGRWKARIMRRDSLLFGGD 208

Query: 180 RFKGKLKGFKWFVGVGIRKI*LGFSNSIKTW*FPKTEVTATKTILIRCFSREICDKQDLG 1
           RFKGK +G +   G    +  + F    K     K      +        REICDKQDLG
Sbjct: 209 RFKGKTEGIQVVRGGRYLQDLVRFFKFYKNLVVSKNGSDCHQNNFDSLLLREICDKQDLG 268


>sp|Q9YAD3|TRM56_AERPE tRNA ribose 2'-O-methyltransferase aTrm56
           OS=Aeropyrum pernix GN=APE_2006.1 PE=3 SV=2
          Length = 183

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 480 GFVLAKVIDGG--EGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKD 307
           GFVL  V D G  E +R+      G F+ +C +  +R++ + R+G  E++     G+N D
Sbjct: 40  GFVLEGVCDEGVVESVRRVVARWGGPFTVECGVSGRRYVRMWREGGGEVVHLTMYGVNVD 99


>sp|Q8HUG9|RPC1A_CHLRE DNA-directed RNA polymerase subunit beta'
           N-terminal section OS=Chlamydomonas reinhardtii
           GN=rpoC1A PE=3 SV=1
          Length = 603

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 47  KIVLVAVTSVFGNYQVFIEFEKPN*ILRIPTPTNHLNPFSFPLNLSPPNSRESLLIMRAF 226
           +++ V+ +S+F ++Q  ++ + P       T     +  + PL +S PNS  S   M   
Sbjct: 399 QLLPVSPSSIFESWQKIMKKQYPEKYNLTNTMIKIKSTNTLPLRVSQPNSNTSYSYMPNI 458

Query: 227 HLPEGKG 247
           ++PEG+G
Sbjct: 459 YIPEGEG 465


>sp|A4XI64|RNPH_CALS8 Ribonuclease PH OS=Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rph
           PE=3 SV=1
          Length = 258

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 23/76 (30%), Positives = 39/76 (51%)
 Frame = -2

Query: 498 KNSIDRGFVLAKVIDGGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLG 319
           K S+D   V+    D GE I  + T   G F+ +   QF++ L +G+ G ++I+E     
Sbjct: 182 KASVDMNLVMN---DKGEFIEIQGTAEGGAFTQE---QFEKLLELGKQGIQKIIEIQREV 235

Query: 318 LNKDISISASSSKEER 271
           L +D  +  S  K+E+
Sbjct: 236 LGEDSKLIGSVPKDEK 251


>sp|A4GGE1|YCF2_PHAVU Protein ycf2 OS=Phaseolus vulgaris GN=ycf2-A
           PE=3 SV=1
          Length = 2288

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +2

Query: 44  IKIVLVAVTSVFGNYQVFIEFEKPN*ILRIPTPTNHLNPFSFPLNLSPPNSRESLLIMRA 223
           + + +VAV     N +  +E + P     +P P N + P +  L  S  +S  + LI+  
Sbjct: 80  VVLFVVAVLIYRINNRKMVERKNPYLTRLLPIPMNSIGPKNDTLEESSESSNINRLIVPL 139

Query: 224 FHLPEGKGVVTS*RISLSSF 283
            +LP+GK      +IS SSF
Sbjct: 140 LYLPKGK------KISESSF 153


>sp|O06458|TRES_THETH Trehalose synthase OS=Thermus thermophilus
           GN=treS PE=3 SV=1
          Length = 963

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 285 SKEEREIRYDVTTPLPSGRWKARIMRRDSLLFGGDRFKGKL 163
           ++EERE  Y+   P P  R    I RR   L GGDR + +L
Sbjct: 314 TEEEREFMYEAYAPDPKFRINLGIRRRLMPLLGGDRRRYEL 354


>sp|P87239|MDJ1_SCHPO DnaJ homolog 1, mitochondrial
           OS=Schizosaccharomyces pombe GN=mdj1 PE=2 SV=1
          Length = 528

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
 Frame = -2

Query: 465 KVIDGGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYY------------- 325
           ++   G+GIRK  T  YGNF  +  +   + LS     +R +LE                
Sbjct: 408 RITMAGKGIRKVNTSRYGNFYVNFEVTIPKILS---PHERSLLEQLADALNDSTARRTQS 464

Query: 324 --LGLNKDISISASSSKEEREIRYDVTT 247
              G N   S S++SSK    I  + TT
Sbjct: 465 SPSGTNSSTSTSSTSSKHSTGISTEPTT 492
tr_hit_id Q9P880
Definition tr|Q9P880|Q9P880_BOTFU Adenylate cyclase OS=Botryotinia fuckeliana
Align length 89
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915539|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_G09.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9P880|Q9P880_BOTFU Adenylate cyclase OS=Botryotinia fuckelia...    39   0.14 
tr|A6RRI8|A6RRI8_BOTFB Putative uncharacterized protein (Fragmen...    39   0.14 
tr|Q19K45|Q19K45_SCLSC Adenylate cyclase OS=Sclerotinia scleroti...    37   0.88 
tr|A7EQW2|A7EQW2_SCLS1 Putative uncharacterized protein OS=Scler...    37   0.88 
tr|B8M322|B8M322_9EURO Adenylate cyclase AcyA OS=Talaromyces sti...    36   1.5  
tr|A9W6D0|A9W6D0_METEP Porin OS=Methylobacterium extorquens (str...    34   5.7  
tr|B6Y1B7|B6Y1B7_ANATH Ribonuclease PH OS=Anaerocellum thermophi...    34   5.7  
tr|Q23K05|Q23K05_TETTH Putative uncharacterized protein OS=Tetra...    34   5.7  
tr|A6R296|A6R296_AJECN Putative uncharacterized protein OS=Ajell...    33   7.4  
tr|B7KQP6|B7KQP6_METCH Porin OS=Methylobacterium chloromethanicu...    33   9.7  
tr|Q7PDU2|Q7PDU2_PLAYO Arabidopsis thaliana BRAHMA ortholog-rela...    33   9.7  
tr|B6Q9G2|B6Q9G2_PENMA Adenylate cyclase AcyA OS=Penicillium mar...    33   9.7  

>tr|Q9P880|Q9P880_BOTFU Adenylate cyclase OS=Botryotinia fuckeliana
            GN=bac PE=4 SV=1
          Length = 2139

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 25/89 (28%), Positives = 44/89 (49%)
 Frame = -2

Query: 450  GEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEER 271
            G  I K   EN+G+   D   + KR  ++  +  ++ L   +L LNKD++ +A+ S EER
Sbjct: 1461 GSRIAKYLHENFGHIFSD---ELKRLNALNNETPKDALRRAFLSLNKDLATAAAQSNEER 1517

Query: 270  EIRYDVTTPLPSGRWKARIMRRDSLLFGG 184
             +     +  P+      ++ +D L  GG
Sbjct: 1518 AVLSQRGSTTPA------VLSQDDLTSGG 1540


>tr|A6RRI8|A6RRI8_BOTFB Putative uncharacterized protein (Fragment)
            OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_02865
            PE=4 SV=1
          Length = 1740

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 25/89 (28%), Positives = 44/89 (49%)
 Frame = -2

Query: 450  GEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEER 271
            G  I K   EN+G+   D   + KR  ++  +  ++ L   +L LNKD++ +A+ S EER
Sbjct: 1349 GSRIAKYLHENFGHIFSD---ELKRLNALNNETPKDALRRAFLSLNKDLATAAAQSNEER 1405

Query: 270  EIRYDVTTPLPSGRWKARIMRRDSLLFGG 184
             +     +  P+      ++ +D L  GG
Sbjct: 1406 AVLSQRGSTTPA------VLSQDDLTSGG 1428


>tr|Q19K45|Q19K45_SCLSC Adenylate cyclase OS=Sclerotinia sclerotiorum
            GN=sac1 PE=4 SV=1
          Length = 2155

 Score = 36.6 bits (83), Expect = 0.88
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = -2

Query: 453  GGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEE 274
            GG  I K   EN+G+   +   + KR  ++  +  ++ L   +L LNKD++ +A+ + EE
Sbjct: 1463 GGSKIAKYLHENFGHIFSE---ELKRLNALNNETPKDALRRAFLSLNKDLATAATQNTEE 1519

Query: 273  REI 265
            R +
Sbjct: 1520 RSL 1522


>tr|A7EQW2|A7EQW2_SCLS1 Putative uncharacterized protein
            OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
            Ss-1) GN=SS1G_07715 PE=4 SV=1
          Length = 2102

 Score = 36.6 bits (83), Expect = 0.88
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = -2

Query: 453  GGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEE 274
            GG  I K   EN+G+   +   + KR  ++  +  ++ L   +L LNKD++ +A+ + EE
Sbjct: 1410 GGSKIAKYLHENFGHIFSE---ELKRLNALNNETPKDALRRAFLSLNKDLATAATQNTEE 1466

Query: 273  REI 265
            R +
Sbjct: 1467 RSL 1469


>tr|B8M322|B8M322_9EURO Adenylate cyclase AcyA OS=Talaromyces
            stipitatus ATCC 10500 GN=TSTA_092410 PE=4 SV=1
          Length = 2159

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 26/90 (28%), Positives = 44/90 (48%)
 Frame = -2

Query: 453  GGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEE 274
            GG  I K   EN+ +    CF+   + LS   D   + L   +L LNKD++ +A  S ++
Sbjct: 1453 GGSKIAKFLHENFTH----CFVDELKKLSPDTDTPLDALRRTFLTLNKDMAGAAYKSIDD 1508

Query: 273  REIRYDVTTPLPSGRWKARIMRRDSLLFGG 184
            +E+R         G   A+++ +D +  GG
Sbjct: 1509 KEVR-----QFTRGSTAAKLLSKDDIHSGG 1533


>tr|A9W6D0|A9W6D0_METEP Porin OS=Methylobacterium extorquens (strain
           PA1) GN=Mext_2745 PE=3 SV=1
          Length = 285

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -2

Query: 384 FKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEE---REIRYDVTTPLPSGRWKARI 214
           F  + SVGR          +LG+  D++I A   + +   R +  + T P+P+G + AR 
Sbjct: 218 FLNYFSVGR----------WLGIKSDVTIKAEYIRYDLGSRNVLINQTAPVPAGSYTARF 267

Query: 213 MRRDSLLFGGDRFK 172
               SL+  G  +K
Sbjct: 268 ATEGSLIRAGFNYK 281


>tr|B6Y1B7|B6Y1B7_ANATH Ribonuclease PH OS=Anaerocellum thermophilum
           DSM 6725 GN=AtheDRAFT_1268 PE=4 SV=1
          Length = 258

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = -2

Query: 498 KNSIDRGFVLAKVIDGGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLG 319
           K ++D   V+    D GE I  + T     FS++   QF++ L +G+ G ++I+E     
Sbjct: 182 KAAVDMNLVMN---DKGEFIEIQGTAEGAPFSWE---QFQKLLELGKQGIQKIIEVQKEV 235

Query: 318 LNKDISISASSSKEEREIRYD 256
           L +D  +  S  K+E+  R D
Sbjct: 236 LGQDCELVGSVPKDEKTSRCD 256


>tr|Q23K05|Q23K05_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00196290 PE=4
           SV=1
          Length = 677

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -2

Query: 495 NSIDRGFVLAKVIDGGEGIRKKQTENYG-NFSYDCFLQFKRFLSVGRDGKREILEPYYLG 319
           NSI+R   L+KV+D     + +  + Y  NF     LQF ++   G++ K E+       
Sbjct: 515 NSIERSMKLSKVLDPASQKQFEILQKYNQNFKIKSGLQFHKYCLAGQENKVEMKNKDNKN 574

Query: 318 LNKDISISASSSKEEREIR 262
           L+K   +   S K++ +++
Sbjct: 575 LSKSQILQKYSEKQKNDLQ 593


>tr|A6R296|A6R296_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_03754 PE=4 SV=1
          Length = 1014

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = -2

Query: 453 GGEGIRKKQTENYGNFSYDCFLQFKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEE 274
           GG  I K   E++     +   + K+  + G +   + L   +LGLNKD++ +A  S +E
Sbjct: 501 GGSRIAKYLQEHFTAMFAE---ELKKLRNSGGESPLDALRRTFLGLNKDMATAAQRSMDE 557

Query: 273 REIRY 259
           RE R+
Sbjct: 558 REQRH 562


>tr|B7KQP6|B7KQP6_METCH Porin OS=Methylobacterium chloromethanicum
           CM4 GN=Mchl_2972 PE=4 SV=1
          Length = 285

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -2

Query: 384 FKRFLSVGRDGKREILEPYYLGLNKDISISASSSKEE---REIRYDVTTPLPSGRWKARI 214
           F  + SVGR          +LG+  D++I A   + +   R +  + T P+P G + AR 
Sbjct: 218 FLNYFSVGR----------WLGIKSDVTIKAEYIRYDLGSRNVLINQTAPVPPGSYTARF 267

Query: 213 MRRDSLLFGGDRFK 172
               SL+  G  +K
Sbjct: 268 ATEGSLIRAGFNYK 281