BP915544 |
Clone id |
YMU001_000072_H03 |
Library |
YMU01 |
Length |
417 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000072_H03. |
Accession |
BP915544 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GGCCAGCAGAGGAGCTGGTGTCTGTCTCGGGGGATCGTGAAGCAACATAATGGCGATGAC CATGAATCCCATGAAGGCTGGTAAGGCTGGTCTTGAGGATGCTCAGGAACCTGTTCGTAG AATCCGAATTACTCTGTCATCTAAGAATGTCGAGAATCTCGAAAAAGTGTGTGCCGATCT TGTGAGAGGCGCAAAAGACAAGAAGCTGAAAGTCAAAGGACCTGTGAGAATGCCCACCAA AGTGTTGCACATTACCACCCGCAAGTCTCCTTGTGGTGAAGGTACAACACATGGGACCGA TTTGAACTGCGAGTGCACAAGAGGGTCATTGATCTTCACAGCTCCTCTGAGGTTGGTGAA GCAGATTACATCTATTACCATTGAGCCAGGAGTTGAAGTAGAGGTTACCATAGCAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49200 |
Definition |
sp|P49200|RS201_ARATH 40S ribosomal protein S20-1 OS=Arabidopsis thaliana |
Align length |
123 |
Score (bit) |
154.0 |
E-value |
1.0e-37 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TN87 |
Definition |
tr|A9TN87|A9TN87_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
116 |
Score (bit) |
162.0 |
E-value |
1.0e-38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915544|Adiantum capillus-veneris mRNA, clone: YMU001_000072_H03. (404 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TN87|A9TN87_PHYPA Predicted protein OS=Physcomitrella paten... 162 1e-38 tr|A9U106|A9U106_PHYPA Predicted protein OS=Physcomitrella paten... 158 1e-37 tr|B3TLT0|B3TLT0_ELAGV Structural constituent of ribosome OS=Ela... 157 2e-37 tr|A9NR88|A9NR88_PICSI Putative uncharacterized protein OS=Picea... 157 3e-37 tr|A9TLE4|A9TLE4_PHYPA Predicted protein OS=Physcomitrella paten... 155 7e-37 tr|A9PD23|A9PD23_POPTR Putative uncharacterized protein OS=Popul... 154 3e-36 tr|A9NLL7|A9NLL7_PICSI Putative uncharacterized protein OS=Picea... 154 3e-36 tr|A5AJ83|A5AJ83_VITVI Putative uncharacterized protein OS=Vitis... 153 4e-36 tr|Q0DEU6|Q0DEU6_ORYSJ Os06g0134000 protein OS=Oryza sativa subs... 152 6e-36 tr|A2Y8Y0|A2Y8Y0_ORYSI Putative uncharacterized protein OS=Oryza... 152 6e-36 tr|A9PAL8|A9PAL8_POPTR Putative uncharacterized protein OS=Popul... 150 3e-35 tr|A2Q4V6|A2Q4V6_MEDTR Ribosomal protein S10, eukaryotic and arc... 149 5e-35 tr|Q8H189|Q8H189_ARATH 40S ribosomal protein S20 OS=Arabidopsis ... 149 7e-35 tr|A4PUT2|A4PUT2_MEDTR Ribosomal protein S10, eukaryotic and arc... 149 9e-35 tr|Q8LNL2|Q8LNL2_ORYSJ Os10g0170200 protein OS=Oryza sativa subs... 148 1e-34 tr|A2Z5D5|A2Z5D5_ORYSI Putative uncharacterized protein OS=Oryza... 148 1e-34 tr|Q10P27|Q10P27_ORYSJ Os03g0249400 protein OS=Oryza sativa subs... 147 2e-34 tr|B8AK27|B8AK27_ORYSI Putative uncharacterized protein OS=Oryza... 147 2e-34 tr|B4FDT0|B4FDT0_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 147 3e-34 tr|B6U4I9|B6U4I9_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 144 2e-33 tr|B6T6T3|B6T6T3_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 144 2e-33 tr|Q5UCF6|Q5UCF6_MAIZE Ribosomal protein S10p/S20e OS=Zea mays P... 143 5e-33 tr|A4VB16|A4VB16_PLADU Putative uncharacterized protein OS=Platy... 142 1e-32 tr|A4RTY5|A4RTY5_OSTLU Ribosomal protein S20, component of cytos... 140 3e-32 tr|B6T8K2|B6T8K2_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 140 4e-32 tr|B6SIQ7|B6SIQ7_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 140 4e-32 tr|Q8MUE5|Q8MUE5_9BIVA Ribosomal protein S20 OS=Chlamys farreri ... 138 1e-31 tr|A8UAG4|A8UAG4_9BILA Putative ribosomal protein S20 OS=Barents... 137 4e-31 tr|A8E6C3|A8E6C3_9BILA Putative 40S ribosomal protein S20 OS=Spa... 136 5e-31 tr|A8J8M9|A8J8M9_CHLRE Ribosomal protein S20 OS=Chlamydomonas re... 136 6e-31
>tr|A9TN87|A9TN87_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_148072 PE=4 SV=1 Length = 119
Score = 162 bits (409), Expect = 1e-38 Identities = 83/116 (71%), Positives = 94/116 (81%) Frame = +1
Query: 55 PMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMPTKVL 234 P+K GKAG+E+A E V RIRITLSSKNV+NLEKVCADL++GAKDK+LKVKGPVRMPTKVL Sbjct: 2 PIKPGKAGVEEAIETVHRIRITLSSKNVKNLEKVCADLIKGAKDKRLKVKGPVRMPTKVL 61
Query: 235 HITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 HITTRKSPCGEGT + + +P +VKQITSITIEPGVEVEVTIA Sbjct: 62 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHSPSEVVKQITSITIEPGVEVEVTIA 117
>tr|A9U106|A9U106_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_154054 PE=4 SV=1 Length = 119
Score = 158 bits (399), Expect = 1e-37 Identities = 81/116 (69%), Positives = 92/116 (79%) Frame = +1
Query: 55 PMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMPTKVL 234 P+K GK G+E+ E V RIRITLSSKNV+NLEKVCADL++GAKDK+LKVKGPVRMPTKVL Sbjct: 2 PIKPGKIGVEEPVENVHRIRITLSSKNVKNLEKVCADLIKGAKDKRLKVKGPVRMPTKVL 61
Query: 235 HITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 HITTRKSPCGEGT + + +P +VKQITSITIEPGVEVEVTIA Sbjct: 62 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHSPSEVVKQITSITIEPGVEVEVTIA 117
>tr|B3TLT0|B3TLT0_ELAGV Structural constituent of ribosome OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 122
Score = 157 bits (398), Expect = 2e-37 Identities = 83/120 (69%), Positives = 92/120 (76%) Frame = +1
Query: 43 MTMNPMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMP 222 M MK K GLE++QE + RIRITLSSKNV+NLEKVCADLVRGAKDK+L+VKGPVRMP Sbjct: 1 MAFAAMKPAKPGLEESQEQLHRIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
Query: 223 TKVLHITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 TKVLHITTRKSPCGEGT R + + +VKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLHITTRKSPCGEGTNTWDRFELRVHRRVIDLMSSPEVVKQITSITIEPGVEVEVTIA 120
>tr|A9NR88|A9NR88_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 122
Score = 157 bits (396), Expect = 3e-37 Identities = 84/120 (70%), Positives = 92/120 (76%) Frame = +1
Query: 43 MTMNPMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMP 222 M M MK KAGLED QE + RIRITLSSKNV+NLEKVCADLVRGAKDK+LKVKGPVRMP Sbjct: 1 MAMGMMKPMKAGLEDPQEDLHRIRITLSSKNVKNLEKVCADLVRGAKDKRLKVKGPVRMP 60
Query: 223 TKVLHITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 TKVL+ TTRKSPCGEGT + + + +VKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTIA 120
>tr|A9TLE4|A9TLE4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_147307 PE=4 SV=1 Length = 118
Score = 155 bits (393), Expect = 7e-37 Identities = 82/116 (70%), Positives = 93/116 (80%), Gaps = 1/116 (0%) Frame = +1
Query: 58 MKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMPTKVLH 237 MK GK G+E+A E V RIRITLSSKNV+NLEKVCADL++GAKDK+LKVKGPVRMPTKVLH Sbjct: 1 MKPGKVGVEEAVETVHRIRITLSSKNVKNLEKVCADLIKGAKDKRLKVKGPVRMPTKVLH 60
Query: 238 ITTRKSPCGEGTTHGTD-LNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 ITTRKSPCGE T+ D + + +P +VKQITSITIEPGVEVEVTIA Sbjct: 61 ITTRKSPCGEAGTNTWDRFELRVHKRVIDLHSPSEVVKQITSITIEPGVEVEVTIA 116
>tr|A9PD23|A9PD23_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 123
Score = 154 bits (388), Expect = 3e-36 Identities = 81/122 (66%), Positives = 93/122 (76%) Frame = +1
Query: 37 MAMTMNPMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVR 216 MA MKA K GLE+AQE + +IRITLSSKNV+NLEKVC DLVRGAKDK+L+VKGPVR Sbjct: 1 MAAAYGAMKAQKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60
Query: 217 MPTKVLHITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVT 396 +PTKVL+ITTRKSPCGEGT + + + +VKQITSITIEPGVEVEVT Sbjct: 61 IPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVT 120
Query: 397 IA 402 IA Sbjct: 121 IA 122
>tr|A9NLL7|A9NLL7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 122
Score = 154 bits (388), Expect = 3e-36 Identities = 82/120 (68%), Positives = 91/120 (75%) Frame = +1
Query: 43 MTMNPMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMP 222 M M +K KAGLED QE + RIRITLSSKNV+NLEKVC DLVRGAKDK+LKVKGPVRMP Sbjct: 1 MAMGMIKPMKAGLEDPQEELHRIRITLSSKNVKNLEKVCGDLVRGAKDKRLKVKGPVRMP 60
Query: 223 TKVLHITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 TKVL+ TTRKSPCGEGT + + + +VKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTIA 120
>tr|A5AJ83|A5AJ83_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002374 PE=4 SV=1 Length = 122
Score = 153 bits (387), Expect = 4e-36 Identities = 83/121 (68%), Positives = 95/121 (78%), Gaps = 1/121 (0%) Frame = +1
Query: 43 MTMNPMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMP 222 M MK K GLE+ QE + +IRITLSSKNV+NLEKVCADLVRGAKDK+L+VKGPVRMP Sbjct: 1 MAYAAMKPTKPGLEEPQEAIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
Query: 223 TKVLHITTRKSPCGEGTTHGTDLNCECTRGSL-IFTAPLRLVKQITSITIEPGVEVEVTI 399 TKVLHITTRKSPCGEGT + + +F++P +VKQITSITIEPGVEVEVTI Sbjct: 61 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSP-DVVKQITSITIEPGVEVEVTI 119
Query: 400 A 402 A Sbjct: 120 A 120
>tr|Q0DEU6|Q0DEU6_ORYSJ Os06g0134000 protein OS=Oryza sativa subsp. japonica GN=Os06g0134000 PE=2 SV=1 Length = 128
Score = 152 bits (385), Expect = 6e-36 Identities = 79/116 (68%), Positives = 89/116 (76%) Frame = +1
Query: 55 PMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMPTKVL 234 PMK+GK G E +QE RIRITLSSK+V+NLEKVC DLV+GAKDK LKVKGPVRMPTKVL Sbjct: 11 PMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVL 70
Query: 235 HITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 HITTRKSPCGEGT + + + +VKQITSITIEPGVEVEVTI+ Sbjct: 71 HITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
>tr|A2Y8Y0|A2Y8Y0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21509 PE=4 SV=1 Length = 128
Score = 152 bits (385), Expect = 6e-36 Identities = 79/116 (68%), Positives = 89/116 (76%) Frame = +1
Query: 55 PMKAGKAGLEDAQEPVRRIRITLSSKNVENLEKVCADLVRGAKDKKLKVKGPVRMPTKVL 234 PMK+GK G E +QE RIRITLSSK+V+NLEKVC DLV+GAKDK LKVKGPVRMPTKVL Sbjct: 11 PMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVL 70
Query: 235 HITTRKSPCGEGTTHGTDLNCECTRGSLIFTAPLRLVKQITSITIEPGVEVEVTIA 402 HITTRKSPCGEGT + + + +VKQITSITIEPGVEVEVTI+ Sbjct: 71 HITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
|