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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915553
Clone id YMU001_000073_A02
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATAAAGCAAAGTGATGGTGGCCACAGATCTTTCCATTTATAGCATGCTGCCAGGCTCGAA
GCAGCATGCGTTTTGGTTTTGTCAGAAATTGTCACAGCAAAGTGGTTGCAGATTGCGACC
TTTGGTTGGTGAGGGGTTGAAGTATAAGGCAACGTGTTGTTCTGGTTATGGCATTGAGTA
ATATCCATACGGCTAGTCTTGGGGAAGAGAAATTACTGGCCAGGATGGCTAGTAACAGAG
GACTTATTCTGCACGTTCTGCAAGCTCGTCAGCTGTAATTAGATGTGTCTCCGAATGTTG
GTGGCCTGCCTTTATACATTAATTATGCAGTAAGTTACTTGCTATAGCGTTATCATGTGA
AGAAAAATCAAATTCTGCTTCTCGCCATGTTATCACATAATTGCGAAGTAGACTTGTAAT
TATAGACAGGATTCTAGCTACAGCTCTTGGGTTGATTTGGAAGTGATGGGG
■■Homology search results ■■ -
sp_hit_id P0C7P2
Definition sp|P0C7P2|RFL3S_HUMAN Putative protein RFPL3S OS=Homo sapiens
Align length 49
Score (bit) 33.1
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915553|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A02.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C7P2|RFL3S_HUMAN Putative protein RFPL3S OS=Homo sapiens GN...    33   0.63 
sp|P35358|OPSG_GECGE Green-sensitive opsin P521 OS=Gecko gecko P...    31   3.2  
sp|P19644|RNAS1_SEMEN Ribonuclease pancreatic OS=Semnopithecus e...    30   4.1  
sp|Q5XI89|FA55D_RAT Protein FAM55D OS=Rattus norvegicus GN=Fam55...    30   4.1  
sp|Q8SPN4|RNAS1_PYGNE Ribonuclease pancreatic OS=Pygathrix nemae...    30   5.3  
sp|Q52KP5|FA55D_MOUSE Protein FAM55D OS=Mus musculus GN=Fam55d P...    30   5.3  
sp|P25042|ROX1_YEAST Repressor ROX1 OS=Saccharomyces cerevisiae ...    30   6.9  
sp|Q8SPN3|RNS1B_PYGNE Ribonuclease 1B pancreatic OS=Pygathrix ne...    30   6.9  
sp|Q8SQ09|RNAS1_PAPHA Ribonuclease pancreatic OS=Papio hamadryas...    30   6.9  
sp|P61822|RNAS1_MIOTA Ribonuclease pancreatic OS=Miopithecus tal...    30   6.9  
sp|P61821|RNAS1_CERAE Ribonuclease pancreatic OS=Cercopithecus a...    30   6.9  
sp|Q9CIV4|PEPDA_LACLA Probable dipeptidase A OS=Lactococcus lact...    29   9.1  
sp|Q9FZ90|ERF87_ARATH Ethylene-responsive transcription factor E...    29   9.1  

>sp|P0C7P2|RFL3S_HUMAN Putative protein RFPL3S OS=Homo sapiens
           GN=RFPL3S PE=2 SV=1
          Length = 107

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 289 DTSNYS*RACRTCRISPLLLAILASNFSSPRLAVWI--LLNAITRTTRC 149
           DTSN S R+CR C +SPL   + +S      LAV    +++ + R T C
Sbjct: 4   DTSNLSARSCRFCVMSPLRTLLRSSEMRRKLLAVSASKVISTVKRKTSC 52


>sp|P35358|OPSG_GECGE Green-sensitive opsin P521 OS=Gecko gecko PE=1
           SV=1
          Length = 365

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +1

Query: 148 GNVLFWLWH*VISIRLVLGKRNYWPGWLVTE---DLFCTFCKLVSCN*MCLRMLVACLYT 318
           G V  W+W    S   + G   YWP  L T    D+F    +L  C    L +++ C + 
Sbjct: 171 GIVFSWVWAWGWSAPPIFGWSRYWPHGLKTSCGPDVFSGSVEL-GCQSFMLTLMITCCFL 229

Query: 319 LIMQ*VTCY 345
            +   + CY
Sbjct: 230 PLFIIIVCY 238


>sp|P19644|RNAS1_SEMEN Ribonuclease pancreatic OS=Semnopithecus
           entellus GN=RNASE1 PE=1 SV=1
          Length = 128

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   SRM IT+C   N +      Y ++P +  + + C
Sbjct: 51  LVDVQNVCFQEKVTCKNGQTNCFKSNSRMHITECRLTNGSKYPNCAYGTSPKERHIIVAC 110

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 111 EGSPYVPVHFDDSVEDST 128


>sp|Q5XI89|FA55D_RAT Protein FAM55D OS=Rattus norvegicus GN=Fam55d
           PE=2 SV=1
          Length = 542

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 18/77 (23%)
 Frame = -2

Query: 182 ITQCHNQNNTLPYTSTPHQP------------------KVAICNHFAVTISDKTKTHAAS 57
           IT  H++N  + Y S   +                    V+ CN  AV +  K K   AS
Sbjct: 253 ITHMHSKNKDISYLSQQERSLFERSNIAVEIMGKSNVISVSKCNK-AVPVKKKCKFGMAS 311

Query: 56  SLAACYKWKDLWPPSLC 6
           ++   + WK+ W P+ C
Sbjct: 312 AIPTGHVWKNTWNPASC 328


>sp|Q8SPN4|RNAS1_PYGNE Ribonuclease pancreatic OS=Pygathrix nemaeus
           GN=RNASE1 PE=1 SV=1
          Length = 156

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   S+M IT C   N +      Y ++P +  + + C
Sbjct: 79  LVDVQNVCFQEKVTCKNGQTNCFKSNSKMHITDCRLTNGSKYPNCAYRTSPKERHIIVAC 138

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 139 EGSPYVPVHFDASVEDST 156


>sp|Q52KP5|FA55D_MOUSE Protein FAM55D OS=Mus musculus GN=Fam55d PE=2
           SV=1
          Length = 543

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 119 VAICNHFAVTISDKTKTHAASSLAACYKWKDLWPPSLC 6
           V+ CN     + +K K    S++ + + WK+ W P+ C
Sbjct: 292 VSKCNTDTAPVKEKCKLGMVSAIPSGHVWKNAWTPASC 329


>sp|P25042|ROX1_YEAST Repressor ROX1 OS=Saccharomyces cerevisiae
           GN=ROX1 PE=1 SV=1
          Length = 368

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 257 NVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNTLPYTSTPHQP 123
           N  N     S  G      KT+R D+ Q  +Q N++PY S PH P
Sbjct: 167 NTSNYMVSRSLSGLPLTHDKTAR-DLPQLSSQLNSIPYYSAPHDP 210


>sp|Q8SPN3|RNS1B_PYGNE Ribonuclease 1B pancreatic OS=Pygathrix
           nemaeus GN=RNASE1B PE=3 SV=1
          Length = 156

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   S+M IT+C   N +      Y ++P +  + + C
Sbjct: 79  LVDVQNVCFQEKVTCKNGQTNCFKSNSKMHITECRLTNGSKYPNCAYQTSPKERHIIVAC 138

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 139 EGSPYVPVHFDDSVEDST 156


>sp|Q8SQ09|RNAS1_PAPHA Ribonuclease pancreatic OS=Papio hamadryas
           GN=RNASE1 PE=3 SV=1
          Length = 152

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   S M IT C   N +      Y ++P + ++ + C
Sbjct: 75  LVDVQNVCFQEKVTCKNGQTNCFKSKSSMHITDCRLTNGSRYPNCAYRTSPKERRIIVAC 134

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 135 EGSPYVPVHFDASVEDST 152


>sp|P61822|RNAS1_MIOTA Ribonuclease pancreatic OS=Miopithecus
           talapoin GN=RNASE1 PE=3 SV=1
          Length = 152

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   S M IT C   N +      Y ++P + ++ + C
Sbjct: 75  LVDVQNVCFQEKVTCKNGQTNCFKSKSSMHITDCRLTNGSRYPNCAYRTSPKERRIIVAC 134

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 135 EGSPYVPVHFDASVEDST 152
tr_hit_id Q6FIJ9|Q6FIJ9_CANGA Similar to uniprot
Definition tr|Q6FIJ9|Q6FIJ9_CANGA Similar to uniprot|Q04952 Saccharomyces cerevisiae YMR306w FKS3 OS=Candida glabrata
Align length 57
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915553|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A02.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6FIJ9|Q6FIJ9_CANGA Similar to uniprot|Q04952 Saccharomyces c...    34   3.2  
tr|Q1KHR6|Q1KHR6_NASLA Pancreatic ribonuclease subtype Nb OS=Nas...    33   9.3  
tr|Q1KHQ0|Q1KHQ0_NASLA Pancreatic ribonuclease subtype Na OS=Nas...    33   9.3  

>tr|Q6FIJ9|Q6FIJ9_CANGA Similar to uniprot|Q04952 Saccharomyces
            cerevisiae YMR306w FKS3 OS=Candida glabrata
            GN=CAGL0M13827g PE=4 SV=1
          Length = 1840

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 27   IFPFIACCQARSSMRFGFVRNCHSKVVADCD---LWLVRG*SIRQRVVLVMALSNIH 188
            IFP I+CC A    +  FV +  S ++   D   +W + G +  + ++L++   N+H
Sbjct: 1593 IFPVISCCSAAIGNQVSFVTHLISVIIYAVDFELMWFLEGWNFPRTLILLITAINLH 1649


>tr|Q1KHR6|Q1KHR6_NASLA Pancreatic ribonuclease subtype Nb
           OS=Nasalis larvatus GN=RNASE1 PE=3 SV=1
          Length = 156

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   SRM IT C   N +      Y +TP +  + + C
Sbjct: 79  LVDVQNVCFQEKVTCKNGQTNCFKSNSRMHITDCRLTNGSKYPNCAYRTTPKERHIIVAC 138

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 139 EGSPYVPVHFDASVEDST 156


>tr|Q1KHQ0|Q1KHQ0_NASLA Pancreatic ribonuclease subtype Na
           OS=Nasalis larvatus GN=RNASE1 PE=3 SV=1
          Length = 156

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
 Frame = -2

Query: 272 LTSLQNVQNKSSVTSHPGQ*FLFPKTSRMDITQCHNQNNT----LPYTSTPHQPKVAI-C 108
           L  +QNV  +  VT   GQ   F   SRM IT C   N +      Y +TP +  + + C
Sbjct: 79  LVDVQNVCFQEKVTCKNGQTNCFKSNSRMHITDCRLTNGSKYPNCAYRTTPKERHIIVAC 138

Query: 107 N-------HFAVTISDKT 75
                   HF  ++ D T
Sbjct: 139 EGSPYVPVHFDASVEDST 156