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NBDC - LSDB Archive
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BP915554
Clone id YMU001_000073_A03
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTCAACAAAAGCAACACGATCATCAAAGGACAGCTTGTCAACACCATTGCCGTAAAGAT
TAGCTAGCTGAATCTTGAGCCAGCGAAGTCCTGCGCGCTTTAAAGGGCGACCCTCTGCAA
ATTCTAACAACCCCCTACACATATCTGAACCAAGGTGGTTTAAATGTGGATGCAATGGAT
AAGCACGACCACGGAAATCAATGTTATGTGGATAGTAAAAACATTCCTCATTCTTCATTT
CTCGAGCTACGGAAAGCTTTAGCTCCATATCACATCGTTGTGAGTGCAATTCACGATTAA
TACGTTTCACTCTTAGTAAATCCCATCGCCACTTCTTCAAAGCATCAGCATCGTCCGTCT
GTGGTTTCTGAGGTTCAGGAACATCAGCACGATCTACTATGTCTGCAATTCGGCCACCCT
CTTCCCAAATTTTCTCCACAATTGCCAATACCTTATTGTTGATTCTCCACTTTGTTGCCC
CAAGAATATTCAAAGCATTAAAAACAGAATTCAACTGATC
■■Homology search results ■■ -
sp_hit_id Q9LFV6
Definition sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana
Align length 172
Score (bit) 260.0
E-value 3.0e-69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915554|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A03.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast...   260   3e-69
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr...   257   3e-68
sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri...   256   3e-68
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast...   253   5e-67
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas...   251   1e-66
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri...   250   3e-66
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas...   249   4e-66
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast...   246   6e-65
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast...   246   6e-65
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas...   246   6e-65
sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial ...   154   2e-37
sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial ...   151   2e-36
sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial ...   145   9e-35
sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial ...   122   8e-28
sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial ...   120   4e-27
sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteri...   114   4e-25
sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacter...   106   8e-23
sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteri...   103   5e-22
sp|P06221|RPOL_BPSP6 DNA-directed RNA polymerase OS=Enterobacter...    65   3e-10
sp|P33540|RPOP_NEUCR Probable DNA-directed RNA polymerase OS=Neu...    59   1e-08
sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase OS=Aga...    59   1e-08
sp|Q01521|RPOP_PODAN Probable DNA-directed RNA polymerase OS=Pod...    59   2e-08
sp|P22372|RPOP_CLAPU Probable DNA-directed RNA polymerase OS=Cla...    56   1e-07
sp|P33541|RPOP_NEUIN Probable DNA-directed RNA polymerase OS=Neu...    51   4e-06
sp|O03685|RPOP_GELSP Probable DNA-directed RNA polymerase OS=Gel...    49   1e-05
sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xen...    33   1.1  
sp|P27091|60A_DROME Protein 60A OS=Drosophila melanogaster GN=gb...    33   1.1  
sp|Q24735|60A_DROVI Protein 60A OS=Drosophila virilis GN=gbb PE=...    32   1.4  
sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inne...    32   1.8  
sp|Q97I14|Y1842_CLOAB Uncharacterized protein CA_C1842 OS=Clostr...    30   5.3  

>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial OS=Arabidopsis thaliana
           GN=RPOT2 PE=2 SV=1
          Length = 1011

 Score =  260 bits (664), Expect = 3e-69
 Identities = 116/172 (67%), Positives = 142/172 (82%)
 Frame = -1

Query: 517 QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
           QL  VF AL+ LG+TKWR+N +VL +V++IW  GG +AD+VDR+DVP P+KP T+D   L
Sbjct: 484 QLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGIL 543

Query: 337 KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
           KKW+W++   K++N E HSQRCD ELKLSVAR+MK+EE FYYPHN+DFRGRAYP+ PHLN
Sbjct: 544 KKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLN 603

Query: 157 HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           HLGSD+CRG+LEFAEGRP+  +GLRWLKI LANLY  GVDKLS D R+AF E
Sbjct: 604 HLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTE 655


>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
           OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
          Length = 1002

 Score =  257 bits (656), Expect = 3e-68
 Identities = 116/172 (67%), Positives = 143/172 (83%)
 Frame = -1

Query: 517 QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
           QL  VF AL+ LG TKWR+N KVL IV++IW  GGR+AD+VDR DVP P+ P T+D   +
Sbjct: 475 QLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEI 534

Query: 337 KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
           +KW+W +  VK+ N E HSQRCD+ELKL+VAR+MK+E+ FYYPHN+DFRGRAYP+HP+LN
Sbjct: 535 RKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLN 594

Query: 157 HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           HLGSD+CRG+LEFAEGRPL  +GLRWLKI LAN+YG GVDKLS++ RVAF E
Sbjct: 595 HLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 646


>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial
           OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1
          Length = 1002

 Score =  256 bits (655), Expect = 3e-68
 Identities = 115/172 (66%), Positives = 144/172 (83%)
 Frame = -1

Query: 517 QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
           QL  VF AL+ LG TKWR+N KVL IV++IW  GGR+AD+VDR DVP P++P  +D   +
Sbjct: 475 QLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQI 534

Query: 337 KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
           +KW+W +  VK+ N E HSQRCD+ELKL+VAR+MK+E+ FYYPHN+DFRGRAYP+HP+LN
Sbjct: 535 RKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLN 594

Query: 157 HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           HLGSD+CRG+LEFAEGRPL ++GLRWLKI LAN+YG GVDKLS++ RVAF E
Sbjct: 595 HLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSE 646


>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial OS=Nicotiana sylvestris
            GN=RPOT2 PE=2 SV=2
          Length = 1020

 Score =  253 bits (645), Expect = 5e-67
 Identities = 113/173 (65%), Positives = 141/173 (81%)
 Frame = -1

Query: 520  DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
            +QL  VF AL+ LG TKWRIN +VL++V++IW  GGR+AD+VDR D P P++P T+D   
Sbjct: 492  NQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEAL 551

Query: 340  LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
              KWRW +  VK+ NRE HSQRCD+ELKL+VAR+MK+EE F+YPHN+DFRGRAYP+HPHL
Sbjct: 552  RTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHL 611

Query: 160  NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
            NHLGSD+CRG+LEFAEGRPL  +GLRWLKI LANL+  GV+KLS + R+ F E
Sbjct: 612  NHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTE 664


>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial OS=Nicotiana tabacum
            GN=RPOT2-TOM PE=2 SV=2
          Length = 1021

 Score =  251 bits (642), Expect = 1e-66
 Identities = 112/173 (64%), Positives = 142/173 (82%)
 Frame = -1

Query: 520  DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
            +QL  VF AL+ LG+TKWRIN +VL+++++IW  GGR+AD+VDR D P P++P T+D   
Sbjct: 493  NQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEAL 552

Query: 340  LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
              KWRW +  VK+ NRE HSQRCD+ELKL+VAR+MK+EE F+YPHN+DFRGRAYP+HPHL
Sbjct: 553  RTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHL 612

Query: 160  NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
            NHLGSD+CRG+L FAEGRPL  +GLRWLKI LANL+  GV+KLS + R+AF E
Sbjct: 613  NHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTE 665


>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
           OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
          Length = 976

 Score =  250 bits (638), Expect = 3e-66
 Identities = 108/173 (62%), Positives = 141/173 (81%)
 Frame = -1

Query: 520 DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
           +QL  V+ AL+ LG TKW+IN KVL++V++IW  GGRI  +VDR DVP P++P+ +D + 
Sbjct: 448 EQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEK 507

Query: 340 LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
            K WRW+  +  + N E HSQRCD+ELKL VAR+MK+EE FYYPHN+DFRGRAYP+HP+L
Sbjct: 508 FKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYL 567

Query: 160 NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           NHLGSD+CRG+LEF EG+PL ++GLRWLKI +ANLY  GVDKL+++DR+AF E
Sbjct: 568 NHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTE 620


>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
           OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
          Length = 977

 Score =  249 bits (637), Expect = 4e-66
 Identities = 111/172 (64%), Positives = 141/172 (81%)
 Frame = -1

Query: 517 QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
           Q+  V+ AL+ LG+TKWR+N ++L +VE IW  GG IA +VDR DVP P+   +DD   +
Sbjct: 450 QMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEV 509

Query: 337 KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
           KKW+W + + K+IN+ELHSQRCD ELKLSVAR++K+EE FYYPHN+DFRGRAYP+HPHLN
Sbjct: 510 KKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 569

Query: 157 HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           HL SD+CRG+LEFAEGRPL ++GLRWLKI LA+LY  GV+KL +D R+AFVE
Sbjct: 570 HLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVE 621


>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
           OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
          Length = 977

 Score =  246 bits (627), Expect = 6e-65
 Identities = 110/172 (63%), Positives = 142/172 (82%)
 Frame = -1

Query: 517 QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
           Q+  V+ AL+ LG+TKWR+N ++L++VE IW  GG IA +VDR DVP P+   +DD   +
Sbjct: 451 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEV 509

Query: 337 KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
           KKW+W + + K+IN+ELHSQRCD ELKLSVAR++K+EE FYYPHN+DFRGRAYP+HPHLN
Sbjct: 510 KKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 569

Query: 157 HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           HL SD+CRG+LEFAEGRPL ++GLRWLKI LA+LY  G++KL +D R+AFVE
Sbjct: 570 HLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVE 621


>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
           OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
          Length = 993

 Score =  246 bits (627), Expect = 6e-65
 Identities = 109/168 (64%), Positives = 136/168 (80%)
 Frame = -1

Query: 505 VFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADALKKWR 326
           VF AL+ LG TKWR+N  +L +VE++W +GG IA +V+R DVP P+KP ++D + L+ W+
Sbjct: 470 VFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWK 529

Query: 325 WDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLNHLGS 146
           W   +  +INRE HS RCD+ELKLSVAR+MK+EE FYYPHN+DFRGRAYP+HPHLNHL S
Sbjct: 530 WSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 589

Query: 145 DMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           D+CRG LEFAEGRPL ++GL WLKI LANLY  GV+KLS D R+AFVE
Sbjct: 590 DLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVE 637


>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
           OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
          Length = 977

 Score =  246 bits (627), Expect = 6e-65
 Identities = 110/172 (63%), Positives = 142/172 (82%)
 Frame = -1

Query: 517 QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
           Q+  V+ AL+ LG+TKWR+N ++L++VE IW  GG IA +VDR DVP P+   +DD   +
Sbjct: 451 QMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEV 509

Query: 337 KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
           KKW+W + + K+IN+ELHSQRCD ELKLSVAR++K+EE FYYPHN+DFRGRAYP+HPHLN
Sbjct: 510 KKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLN 569

Query: 157 HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           HL SD+CRG+LEFAEGRPL ++GLRWLKI LA+LY  G++KL +D R+AFVE
Sbjct: 570 HLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVE 621
tr_hit_id Q84LK6
Definition tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica
Align length 173
Score (bit) 270.0
E-value 4.0e-71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915554|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A03.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   270   4e-71
tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   270   4e-71
tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sati...   270   4e-71
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G...   265   8e-70
tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom...   263   5e-69
tr|A3BWE4|A3BWE4_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   261   2e-68
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a...   260   2e-68
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS...   260   3e-68
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o...   260   3e-68
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu...   258   2e-67
tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini...   254   2e-66
tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini...   253   4e-66
tr|Q9SYW4|Q9SYW4_MAIZE DNA-directed RNA polymerase OS=Zea mays G...   250   3e-65
tr|O82725|O82725_MAIZE DNA-directed RNA polymerase OS=Zea mays G...   250   3e-65
tr|Q84LK5|Q84LK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   249   6e-65
tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu...   249   6e-65
tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu...   249   6e-65
tr|Q67UP6|Q67UP6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   249   6e-65
tr|Q41524|Q41524_WHEAT DNA-directed RNA polymerase OS=Triticum a...   249   6e-65
tr|Q0DAH8|Q0DAH8_ORYSJ DNA-directed RNA polymerase (Fragment) OS...   249   6e-65
tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass...   249   6e-65
tr|A3BE54|A3BE54_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   249   6e-65
tr|A2YFP7|A2YFP7_ORYSI DNA-directed RNA polymerase OS=Oryza sati...   249   6e-65
tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini...   246   4e-64
tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   246   6e-64
tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS...   246   6e-64
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   246   6e-64
tr|Q52GZ3|Q52GZ3_SPIOL DNA-directed RNA polymerase OS=Spinacia o...   242   7e-63
tr|A6GV61|A6GV61_CHRMO DNA-directed RNA polymerase (Fragment) OS...   241   2e-62
tr|A9TJ21|A9TJ21_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   237   2e-61

>tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=rpoT1 PE=2 SV=1
          Length = 1017

 Score =  270 bits (689), Expect = 4e-71
 Identities = 120/173 (69%), Positives = 147/173 (84%)
 Frame = -1

Query: 520  DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
            +Q+ SVF ALN LG+TKWR+N +VL+IV++IW  GGR+AD+VDR DV  P+KP T+D D 
Sbjct: 489  EQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDK 548

Query: 340  LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
            LKKWRW L   K+ N E HSQRCD+ELKL+VAR+MK+E+ FYYPHN+DFRGRAYP+HP+L
Sbjct: 549  LKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 608

Query: 160  NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
            NHLGSD+CRG+LEFAEGRPL ++GLRWLKI LANLY  GVDKLS+D R+AF E
Sbjct: 609  NHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTE 661


>tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=OSJNBa0069P02.30-1 PE=2 SV=1
          Length = 951

 Score =  270 bits (689), Expect = 4e-71
 Identities = 120/173 (69%), Positives = 147/173 (84%)
 Frame = -1

Query: 520  DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
            +Q+ SVF ALN LG+TKWR+N +VL+IV++IW  GGR+AD+VDR DV  P+KP T+D D 
Sbjct: 489  EQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDK 548

Query: 340  LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
            LKKWRW L   K+ N E HSQRCD+ELKL+VAR+MK+E+ FYYPHN+DFRGRAYP+HP+L
Sbjct: 549  LKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 608

Query: 160  NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
            NHLGSD+CRG+LEFAEGRPL ++GLRWLKI LANLY  GVDKLS+D R+AF E
Sbjct: 609  NHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTE 661


>tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sativa
           subsp. indica GN=OsI_30516 PE=3 SV=1
          Length = 845

 Score =  270 bits (689), Expect = 4e-71
 Identities = 120/173 (69%), Positives = 147/173 (84%)
 Frame = -1

Query: 520 DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
           +Q+ SVF ALN LG+TKWR+N +VL+IV++IW  GGR+AD+VDR DV  P+KP T+D D 
Sbjct: 317 EQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDK 376

Query: 340 LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
           LKKWRW L   K+ N E HSQRCD+ELKL+VAR+MK+E+ FYYPHN+DFRGRAYP+HP+L
Sbjct: 377 LKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYL 436

Query: 160 NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           NHLGSD+CRG+LEFAEGRPL ++GLRWLKI LANLY  GVDKLS+D R+AF E
Sbjct: 437 NHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTE 489


>tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays
           GN=rpoT1 PE=2 SV=1
          Length = 975

 Score =  265 bits (678), Expect = 8e-70
 Identities = 118/173 (68%), Positives = 145/173 (83%)
 Frame = -1

Query: 520 DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
           +Q+  VF ALN LG+TKWR+N +VL+IV++IW  GGR+AD+VDR DVP P+KP T+D   
Sbjct: 447 EQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETL 506

Query: 340 LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
           LK W+W L   K+ N E HSQRCD+ELKL+VAR+MK+EE FYYPHN+DFRGRAYP+HP+L
Sbjct: 507 LKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYL 566

Query: 160 NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           NHLGSD+CRG+LEFAEGRPL ++GLRWLKI LANLY  GVDKLS+D R+AF E
Sbjct: 567 NHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAE 619


>tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleome
            spinosa PE=4 SV=1
          Length = 1021

 Score =  263 bits (671), Expect = 5e-69
 Identities = 118/172 (68%), Positives = 144/172 (83%)
 Frame = -1

Query: 517  QLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADAL 338
            QL  VF AL+ LG  KWR+N +VL+IV++IW  GGR+AD+VDR+DVP P+KP T+D + L
Sbjct: 501  QLQLVFEALDTLGNAKWRVNKRVLSIVDRIWNSGGRLADLVDRSDVPLPEKPDTEDENIL 560

Query: 337  KKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLN 158
            KKW+W +    + NRE HSQRCD+ELKL+VAR+MK+EE FYYPHNIDFRGRAYP+HPHLN
Sbjct: 561  KKWKWKVKSANKENRERHSQRCDIELKLNVARKMKDEEGFYYPHNIDFRGRAYPMHPHLN 620

Query: 157  HLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
            HLGSD+CRG+LEFAEG+PL  +GLRWLKI LANLY  GVDKLSF+ R+AF E
Sbjct: 621  HLGSDLCRGVLEFAEGKPLGSSGLRWLKIHLANLYAGGVDKLSFEGRLAFTE 672


>tr|A3BWE4|A3BWE4_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
           subsp. japonica GN=OsJ_027366 PE=3 SV=1
          Length = 924

 Score =  261 bits (666), Expect = 2e-68
 Identities = 116/165 (70%), Positives = 141/165 (85%)
 Frame = -1

Query: 496 ALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADALKKWRWDL 317
           ALN LG+TKWR+N +VL+IV++IW  GGR+AD+VDR DV  P+KP T+D D LKKWRW L
Sbjct: 404 ALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTL 463

Query: 316 LRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHLNHLGSDMC 137
              K+ N E HSQRCD+ELKL+VAR+MK+E+ FYYPHN+DFRGRAYP+HP+LNHLGSD+C
Sbjct: 464 RAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 523

Query: 136 RGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           RG+LEFAEGRPL ++GLRWLKI LANLY  GVDKLS+D R+AF E
Sbjct: 524 RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTE 568


>tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum
           aestivum PE=2 SV=1
          Length = 1005

 Score =  260 bits (665), Expect = 2e-68
 Identities = 115/173 (66%), Positives = 145/173 (83%)
 Frame = -1

Query: 520 DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
           +Q+ ++F AL+ LG+TKWR+N +VL+IV++IW  GGR+AD+VDRADV  P+KP T+D   
Sbjct: 477 EQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAE 536

Query: 340 LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
           LKKWRW +   ++ N E HSQRCD+ELKL+VAR+MK E  FYYPHN+DFRGRAYP+HP+L
Sbjct: 537 LKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGFYYPHNLDFRGRAYPMHPYL 596

Query: 160 NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           NHLGSD+CRG+LEF+EGRPL  +GLRWLKI LANLYG GVDKLS+D R+AF E
Sbjct: 597 NHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTE 649


>tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment)
           OS=Hordeum vulgare GN=rpoTm PE=2 SV=1
          Length = 862

 Score =  260 bits (664), Expect = 3e-68
 Identities = 115/173 (66%), Positives = 145/173 (83%)
 Frame = -1

Query: 520 DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
           +Q+ ++F AL+ LG+TKWR+N +VL+IV++IW  GGR+AD+VDRADV  P+KP T+D   
Sbjct: 334 EQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAE 393

Query: 340 LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
           LKKWRW +   K+ N E HSQRCD+ELKL+VAR+MK E  FY+PHN+DFRGRAYP+HP+L
Sbjct: 394 LKKWRWSMRSAKKENSERHSQRCDVELKLAVARKMKEEVGFYHPHNLDFRGRAYPMHPYL 453

Query: 160 NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           NHLGSD+CRG+LEF+EGRPL  +GLRWLKI LANLYG GVDKLS+D R+AF E
Sbjct: 454 NHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTE 506


>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia
            oleracea GN=rpoT2 PE=2 SV=1
          Length = 1036

 Score =  260 bits (664), Expect = 3e-68
 Identities = 114/173 (65%), Positives = 146/173 (84%)
 Frame = -1

Query: 520  DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
            +QL SVF AL+ LG TKWR+N KVL+IV+++W  GGR+AD+VDR DVP P+KP T+D   
Sbjct: 508  EQLKSVFEALDTLGNTKWRVNKKVLSIVDRVWANGGRLADLVDRDDVPLPEKPDTEDESE 567

Query: 340  LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
            LK+W+W +  +K+ NRE HSQRCD+ELKL+VAR+MK+EE F+YPHN+DFRGRAYP+HP+L
Sbjct: 568  LKRWKWKVRSLKKENRERHSQRCDVELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPYL 627

Query: 160  NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
            NHLGSDMCRG+LEFAEGR + ++GLRWLKI +ANLY  G+DKLS + R+AF E
Sbjct: 628  NHLGSDMCRGILEFAEGRAVGKSGLRWLKIHVANLYAGGIDKLSLEGRIAFTE 680


>tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodium
           album PE=2 SV=1
          Length = 988

 Score =  258 bits (658), Expect = 2e-67
 Identities = 114/173 (65%), Positives = 144/173 (83%)
 Frame = -1

Query: 520 DQLNSVFNALNILGATKWRINNKVLAIVEKIWEEGGRIADIVDRADVPEPQKPQTDDADA 341
           + L +VF AL+ LG TKWR+N KVL+I+++IW  GG +AD+VDR D+P P +P TDDA+ 
Sbjct: 460 NNLCTVFEALDTLGNTKWRVNKKVLSIIDRIWASGGCLADLVDREDMPLPGEPDTDDAEE 519

Query: 340 LKKWRWDLLRVKRINRELHSQRCDMELKLSVAREMKNEECFYYPHNIDFRGRAYPLHPHL 161
           +KKW+W +  VK+ N E HSQRCD ELKL+VAR+MK+EE FYYPHN+DFRGRAYP+HPHL
Sbjct: 520 IKKWKWKVKHVKKDNAERHSQRCDTELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHL 579

Query: 160 NHLGSDMCRGLLEFAEGRPLKRAGLRWLKIQLANLYGNGVDKLSFDDRVAFVE 2
           NHLGSD+CRG+LEFAEGRPL ++GL WLK+ +ANLY  GVDKLS++ RVAF E
Sbjct: 580 NHLGSDLCRGILEFAEGRPLGKSGLNWLKVHVANLYAGGVDKLSYEGRVAFTE 632