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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915557
Clone id YMU001_000073_A07
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAACTTCTGCAGAGAAGGAGCTGGACATGAGCAATCCGCGAGTGAAGGAGATAGATTTG
AAGGTTGTTCCGGAGGTTGAGCTCTCAGAAATGGATGCAAAGAAGATGGATATTAGCCAC
AATAGTGCTATGTTTAGTGAGGATTCAGATGAGACTACTGCAAGTGCTGTCTTCTCGCAG
CTGGTGAATCCACAAGGAAGGTAAGGGCATGATCAGGCCTCCGCATACATGCAGCGTCTG
CACGGCTGCGTCGTGTGATGATGATGGGGCATAAGTGAGCTTCCTGATACTTAACTCAAT
GGAATGTGAGGGCTACTACACAAGCGAAGTACCCCTCATTGAGAGAGATGTGAAGGCAAG
ATGACAGAATCTGAGGTAATGCCAAAATGCAGGGGTCTCTTTCAAAGTGCTCTTTTCAAT
TGAGTATACTGATTAACCAATGGGGATGCTTCTTTGTAAAGCATTTAGTCAGTGTCA
■■Homology search results ■■ -
sp_hit_id B0T142
Definition sp|B0T142|MUTS_CAUSK DNA mismatch repair protein mutS OS=Caulobacter sp. (strain K31)
Align length 21
Score (bit) 32.3
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915557|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A07.
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0T142|MUTS_CAUSK DNA mismatch repair protein mutS OS=Cauloba...    32   1.1  
sp|Q9AC54|MUTS_CAUCR DNA mismatch repair protein mutS OS=Cauloba...    32   1.1  
sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae GN...    31   2.5  
sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=...    31   3.3  
sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=...    31   3.3  
sp|P60019|GPR34_PANTR Probable G-protein coupled receptor 34 OS=...    30   5.6  
sp|Q3SAG9|GPR34_PANPA Probable G-protein coupled receptor 34 OS=...    30   5.6  
sp|Q9UPC5|GPR34_HUMAN Probable G-protein coupled receptor 34 OS=...    30   5.6  
sp|Q6XCF2|GPR34_GORGO Probable G-protein coupled receptor 34 OS=...    30   5.6  
sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 OS=Homo sap...    30   7.4  
sp|A4FZS8|RLA0_METM5 Acidic ribosomal protein P0 homolog OS=Meth...    30   7.4  
sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c...    29   9.4  
sp|Q6M0L1|RLA0_METMP Acidic ribosomal protein P0 homolog OS=Meth...    29   9.6  

>sp|B0T142|MUTS_CAUSK DNA mismatch repair protein mutS
           OS=Caulobacter sp. (strain K31) GN=mutS PE=3 SV=1
          Length = 904

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 258 SHDAAVQTLHVCGGLIMPLPS 196
           S D   QTL +CGGLI P+PS
Sbjct: 197 SDDLLAQTLKICGGLIQPMPS 217


>sp|Q9AC54|MUTS_CAUCR DNA mismatch repair protein mutS
           OS=Caulobacter crescentus GN=mutS PE=3 SV=1
          Length = 903

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 258 SHDAAVQTLHVCGGLIMPLPS 196
           S D+  QTL +CGGL+ P+PS
Sbjct: 198 SDDSLSQTLRICGGLVQPMPS 218


>sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae
           GN=TTP1 PE=1 SV=1
          Length = 597

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 25  DMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNSAMFSEDSDETTASAVFSQLVNPQG 198
           D++ P V   DLK + +V LS++D    D+S  S     +  +  A+A+ S   N  G
Sbjct: 324 DITPPAVYTKDLKDLSDVPLSDLDGTIPDVSTESGQLMINKTKHLATALLSLFYNVNG 381


>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus
            musculus GN=Mll3 PE=2 SV=2
          Length = 4903

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +1

Query: 13   EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMD 111
            E++LD  +P VKE+D+K +  VE+ ++D + ++
Sbjct: 2678 EEKLDSDDPSVKELDVKDLEGVEVKDLDDEDLE 2710


>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo
            sapiens GN=MLL3 PE=1 SV=3
          Length = 4911

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +1

Query: 13   EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMD 111
            E++LD  +P VKE+D+K +  VE+ ++D + ++
Sbjct: 2686 EEKLDSDDPSVKELDVKDLEGVEVKDLDDEDLE 2718


>sp|P60019|GPR34_PANTR Probable G-protein coupled receptor 34 OS=Pan
           troglodytes GN=GPR34 PE=3 SV=1
          Length = 381

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -1

Query: 168 STCSSLI*ILTKHSTIVANIHLLCIHF*ELNLRNNLQIYLLHSRIAHVQLLLCRSF 1
           +T  S+I I+     I+A    L IH      RN++QIYLL+  IA + L+ C  F
Sbjct: 58  TTSYSVIFIVGLVGNIIALYVFLGIH----RKRNSIQIYLLNVAIADLLLIFCLPF 109


>sp|Q3SAG9|GPR34_PANPA Probable G-protein coupled receptor 34 OS=Pan
           paniscus GN=GPR34 PE=2 SV=1
          Length = 381

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -1

Query: 168 STCSSLI*ILTKHSTIVANIHLLCIHF*ELNLRNNLQIYLLHSRIAHVQLLLCRSF 1
           +T  S+I I+     I+A    L IH      RN++QIYLL+  IA + L+ C  F
Sbjct: 58  TTSYSVIFIVGLVGNIIALYVFLGIH----RKRNSIQIYLLNVAIADLLLIFCLPF 109


>sp|Q9UPC5|GPR34_HUMAN Probable G-protein coupled receptor 34
           OS=Homo sapiens GN=GPR34 PE=2 SV=2
          Length = 381

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -1

Query: 168 STCSSLI*ILTKHSTIVANIHLLCIHF*ELNLRNNLQIYLLHSRIAHVQLLLCRSF 1
           +T  S+I I+     I+A    L IH      RN++QIYLL+  IA + L+ C  F
Sbjct: 58  TTSYSVIFIVGLVGNIIALYVFLGIH----RKRNSIQIYLLNVAIADLLLIFCLPF 109


>sp|Q6XCF2|GPR34_GORGO Probable G-protein coupled receptor 34
           OS=Gorilla gorilla gorilla GN=GPR34 PE=3 SV=1
          Length = 381

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -1

Query: 168 STCSSLI*ILTKHSTIVANIHLLCIHF*ELNLRNNLQIYLLHSRIAHVQLLLCRSF 1
           +T  S+I I+     I+A    L IH      RN++QIYLL+  IA + L+ C  F
Sbjct: 58  TTSYSVIFIVGLVGNIIALYVFLGIH----RKRNSIQIYLLNVAIADLLLIFCLPF 109


>sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 OS=Homo
           sapiens GN=SYCP1 PE=1 SV=2
          Length = 976

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 10  AEKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNSAMFSEDSDETT 159
           A  E+++SN + + + +K   E+E  E +  K +   N+A   E  D+ T
Sbjct: 747 ASLEIELSNLKAELLSVKKQLEIEREEKEKLKREAKENTATLKEKKDKKT 796
tr_hit_id A7VM23
Definition tr|A7VM23|A7VM23_MARPO Receptor-like kinase OS=Marchantia polymorpha
Align length 67
Score (bit) 42.0
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915557|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A07.
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7VM23|A7VM23_MARPO Receptor-like kinase OS=Marchantia polymo...    42   0.015
tr|Q8VZH5|Q8VZH5_CAPAN Receptor protein kinase-like protein OS=C...    39   0.13 
tr|Q9SCZ4|Q9SCZ4_ARATH Receptor-protein kinase-like protein OS=A...    37   0.37 
tr|Q94C93|Q94C93_ARATH Putative receptor-protein kinase OS=Arabi...    37   0.37 
tr|Q0WM33|Q0WM33_ARATH Receptor protein kinase like protein (Fra...    37   0.37 
tr|A7U523|A7U523_ARATH FERONIA receptor-like kinase OS=Arabidops...    37   0.37 
tr|A7U519|A7U519_ARALY FERONIA receptor-like kinase OS=Arabidops...    37   0.37 
tr|A9Z0N7|A9Z0N7_PONTR FERONIA receptor-like kinase (Fragment) O...    36   0.83 
tr|A7PTJ9|A7PTJ9_VITVI Chromosome chr8 scaffold_29, whole genome...    36   0.83 
tr|Q7RQH6|Q7RQH6_PLAYO XPG I-region, putative (Fragment) OS=Plas...    35   1.4  
tr|Q94EF4|Q94EF4_ORYSJ Putative uncharacterized protein P0665A11...    35   1.9  
tr|B4FYK2|B4FYK2_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.9  
tr|A7U522|A7U522_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   1.9  
tr|A7U521|A7U521_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   1.9  
tr|A2ZY82|A2ZY82_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|A2WVH5|A2WVH5_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|Q10LW0|Q10LW0_ORYSJ Os03g0333200 protein OS=Oryza sativa subs...    35   2.4  
tr|B8ANY8|B8ANY8_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A7U520|A7U520_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   2.4  
tr|A7U518|A7U518_CARFL FERONIA receptor-like kinase OS=Cardamine...    35   2.4  
tr|A7U517|A7U517_BRAOL FERONIA receptor-like kinase OS=Brassica ...    35   2.4  
tr|A3AHM5|A3AHM5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|Q6XCE1|Q6XCE1_CHICK G-protein-coupled receptor GPR34 OS=Gallu...    34   4.1  
tr|A7P1H0|A7P1H0_VITVI Chromosome chr19 scaffold_4, whole genome...    34   4.1  
tr|Q9LK35|Q9LK35_ARATH Receptor-protein kinase-like protein OS=A...    33   9.2  

>tr|A7VM23|A7VM23_MARPO Receptor-like kinase OS=Marchantia polymorpha
            GN=MpRLK7 PE=2 SV=1
          Length = 894

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 28/67 (41%), Positives = 38/67 (56%)
 Frame = +1

Query: 1    ETSAEKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNSAMFSEDSDETTASAVFSQ 180
            E S E  L M       I+L+ +   E  E D   +  +++S    E+S++ TASAVFSQ
Sbjct: 832  ENSMENRL-MEGSTNHSIELRPLRTPEPEEAD---LTTTNHSIDSEEESEDATASAVFSQ 887

Query: 181  LVNPQGR 201
            LVNPQGR
Sbjct: 888  LVNPQGR 894


>tr|Q8VZH5|Q8VZH5_CAPAN Receptor protein kinase-like protein
           OS=Capsicum annuum PE=2 SV=1
          Length = 648

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +1

Query: 55  DLKVVPEVELSEMDAKKMDISHN---SAMFSEDSDETTASAVFSQLVNPQGR 201
           DL   P  + S  D++   IS +    ++ SE+SD  T SAVFSQ++NP+GR
Sbjct: 597 DLNAFPGYDESMTDSRSSGISMSIGGHSLASENSDGLTPSAVFSQIMNPKGR 648


>tr|Q9SCZ4|Q9SCZ4_ARATH Receptor-protein kinase-like protein
            OS=Arabidopsis thaliana GN=F26O13.190 PE=1 SV=1
          Length = 895

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 13   EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVN 189
            E + D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++N
Sbjct: 832  EIKYDDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMN 891

Query: 190  PQGR 201
            P+GR
Sbjct: 892  PKGR 895


>tr|Q94C93|Q94C93_ARATH Putative receptor-protein kinase
            OS=Arabidopsis thaliana GN=At3g51550 PE=2 SV=1
          Length = 895

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 13   EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVN 189
            E + D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++N
Sbjct: 832  EIKYDDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMN 891

Query: 190  PQGR 201
            P+GR
Sbjct: 892  PKGR 895


>tr|Q0WM33|Q0WM33_ARATH Receptor protein kinase like protein
           (Fragment) OS=Arabidopsis thaliana GN=At3g51550 PE=2
           SV=1
          Length = 182

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 13  EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVN 189
           E + D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++N
Sbjct: 119 EIKYDDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMN 178

Query: 190 PQGR 201
           P+GR
Sbjct: 179 PKGR 182


>tr|A7U523|A7U523_ARATH FERONIA receptor-like kinase OS=Arabidopsis
            thaliana GN=FER PE=4 SV=1
          Length = 893

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 13   EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVN 189
            E + D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++N
Sbjct: 830  EIKYDDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMN 889

Query: 190  PQGR 201
            P+GR
Sbjct: 890  PKGR 893


>tr|A7U519|A7U519_ARALY FERONIA receptor-like kinase OS=Arabidopsis
            lyrata GN=FER PE=4 SV=1
          Length = 891

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 13   EKELDMSNPRVKEIDLKVVPEVELSEMDAKKMDISHNS-AMFSEDSDETTASAVFSQLVN 189
            E + D  N + K      V E  +++  +  +D+S    ++ SEDSD  T SAVFSQ++N
Sbjct: 828  EIKYDDGNCKGKNDKSSDVYEGNVTDSRSSGIDMSIGGRSLASEDSDGLTPSAVFSQIMN 887

Query: 190  PQGR 201
            P+GR
Sbjct: 888  PKGR 891


>tr|A9Z0N7|A9Z0N7_PONTR FERONIA receptor-like kinase (Fragment)
           OS=Poncirus trifoliata PE=2 SV=1
          Length = 447

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 127 AMFSEDSDETTASAVFSQLVNPQGR 201
           ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 423 SLASEDSDGLTPSAVFSQIMNPKGR 447


>tr|A7PTJ9|A7PTJ9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00023386001 PE=4 SV=1
          Length = 463

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 127 AMFSEDSDETTASAVFSQLVNPQGR 201
           ++ SEDSD  T SAVFSQ++NP+GR
Sbjct: 439 SLASEDSDGLTPSAVFSQIMNPKGR 463


>tr|Q7RQH6|Q7RQH6_PLAYO XPG I-region, putative (Fragment)
           OS=Plasmodium yoelii yoelii GN=PY01122 PE=4 SV=1
          Length = 1274

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = +1

Query: 1   ETSAEKELDMSNPRVKEIDLKVVP-------EVELSEMDAKKMDISHNSAMFSEDSDETT 159
           E +  KE D+     K+ D++VV        EV++ E DAK+ D+    A   +  +ET 
Sbjct: 741 EEADVKEADIEGVDAKDADVEVVDVTGVDAKEVDVKEADAKEADVKETDAEVVDTVEETD 800

Query: 160 ASAVFSQLVNPQGR*GHDQASA 225
           A    +++V+  G    ++A A
Sbjct: 801 AKEAAAEVVDVTGADTVEEAGA 822