BP915560 |
Clone id |
YMU001_000073_A10 |
Library |
YMU01 |
Length |
387 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000073_A10. |
Accession |
BP915560 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GAGCTTTCACCTTGTAACTAGGTAGCTCCTGGCCAGTTCGTTGCAGTAGATTGTGAAGCA AACTTAAAACATTTTGCTCACCTTTGTCCTCCAAGACCTTCTTGGGCTCTTTCGCCTTTT CAGGTTGTGTAACAGCTCCCACAGATTCAAATTTTCCTAAACTTTCATCTCCATTAACAA GTGTAGTCACAGCATCTAAAAGATGCCTACTATCCTCGTATATGTCCAGTTTTGGATCCT GCATCTTTATTTGTAGTAAATGATCAAGCTCCGTGCGAAGTTGCAGAATGGTATTTGCCA AATTGGTCGACATGAAAAACTCAAGGTTATCTCCCATTATGATTTGACCAGGCTTTGTCC CACAACTTAACCGACCCCCAAACAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7A5S6 |
Definition |
sp|Q7A5S6|SBCC_STAAN Nuclease sbcCD subunit C OS=Staphylococcus aureus (strain N315) |
Align length |
95 |
Score (bit) |
35.8 |
E-value |
0.069 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FF84 |
Definition |
tr|Q9FF84|Q9FF84_ARATH ATP-dependent RNA helicase A-like protein OS=Arabidopsis thaliana |
Align length |
128 |
Score (bit) |
87.4 |
E-value |
3.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915560|Adiantum capillus-veneris mRNA, clone: YMU001_000073_A10. (387 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9FF84|Q9FF84_ARATH ATP-dependent RNA helicase A-like protein... 87 3e-16 tr|Q5ZEC6|Q5ZEC6_ORYSJ Putative DEAD/H box polypeptide 36 protei... 79 1e-13 tr|Q0JR56|Q0JR56_ORYSJ Os01g0118100 protein OS=Oryza sativa subs... 79 1e-13 tr|B8ACY2|B8ACY2_ORYSI Putative uncharacterized protein OS=Oryza... 79 1e-13 tr|A9TSB9|A9TSB9_PHYPA Predicted protein OS=Physcomitrella paten... 79 1e-13 tr|A2ZNM7|A2ZNM7_ORYSJ Fructose-bisphosphate aldolase OS=Oryza s... 79 1e-13 tr|Q9C734|Q9C734_ARATH Putative uncharacterized protein F11I4_16... 76 7e-13 tr|A7QXE2|A7QXE2_VITVI Chromosome undetermined scaffold_221, who... 76 7e-13 tr|A5BFZ2|A5BFZ2_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11 tr|Q10CV6|Q10CV6_ORYSJ Helicase associated domain family protein... 71 3e-11 tr|B8AJW1|B8AJW1_ORYSI Putative uncharacterized protein OS=Oryza... 71 3e-11 tr|A7PH04|A7PH04_VITVI Chromosome chr17 scaffold_16, whole genom... 67 6e-10 tr|A7P3F8|A7P3F8_VITVI Chromosome chr1 scaffold_5, whole genome ... 66 8e-10 tr|Q8S8F6|Q8S8F6_ARATH Putative RNA helicase A (Fragment) OS=Ara... 66 1e-09 tr|Q8GY53|Q8GY53_ARATH Putative ATP-dependent RNA helicase A OS=... 66 1e-09 tr|A5C7X9|A5C7X9_VITVI Putative uncharacterized protein OS=Vitis... 63 6e-09 tr|Q8W302|Q8W302_ORYSA Putative helicase OS=Oryza sativa GN=OSJN... 63 8e-09 tr|Q0DNK2|Q0DNK2_ORYSJ Os03g0748800 protein OS=Oryza sativa subs... 63 8e-09 tr|A3AMP8|A3AMP8_ORYSJ Putative uncharacterized protein OS=Oryza... 63 8e-09 tr|A5C9V9|A5C9V9_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04 tr|Q9SJ58|Q9SJ58_ARATH Putative ATP-dependent RNA helicase A OS=... 45 0.001 tr|Q56WR8|Q56WR8_ARATH ATP-dependent RNA helicase A like protein... 45 0.001 tr|Q9FWK3|Q9FWK3_ORYSA Putative ATP-dependent RNA helicase (5'-p... 45 0.002 tr|Q9FW67|Q9FW67_ORYSA Putative ATP-dependent RNA helicase OS=Or... 45 0.002 tr|B8BHF2|B8BHF2_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002 tr|A8JDS2|A8JDS2_CHLRE ATP-dependent RNA helicase (Fragment) OS=... 45 0.002 tr|A7QQX0|A7QQX0_VITVI Chromosome undetermined scaffold_145, who... 44 0.004 tr|A3C5N2|A3C5N2_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.045 tr|A9USD2|A9USD2_MONBE Predicted protein OS=Monosiga brevicollis... 40 0.045 tr|B8C1N5|B8C1N5_THAPS Putative uncharacterized protein OS=Thala... 38 0.22
>tr|Q9FF84|Q9FF84_ARATH ATP-dependent RNA helicase A-like protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 1161
Score = 87.4 bits (215), Expect = 3e-16 Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Frame = -3
Query: 385 LFGGRLSCGTKPGQIIMGDN-LEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG LS G + G + M D ++FFM NLA + ++L+ ELD LLQ K++DP +DI+++ Sbjct: 955 LFGGSLSTGVQVGHLKMLDGYIDFFMDPNLAESYVKLKEELDKLLQKKLEDPSMDIHKEG 1014
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLEDKGEQNVLSLLHNLLQRTGQ 29 ++L+ AV LV GD+ G+F G T+ + + K N SLL LL R G Sbjct: 1015 KYLMLAVQELVAGDQCEGRF-VFGRDTKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGH 1073
Query: 28 ELPSYKVK 5 P YK K Sbjct: 1074 SPPKYKTK 1081
>tr|Q5ZEC6|Q5ZEC6_ORYSJ Putative DEAD/H box polypeptide 36 protein OS=Oryza sativa subsp. japonica GN=P0494A10.16 PE=4 SV=1 Length = 1063
Score = 78.6 bits (192), Expect = 1e-13 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 10/137 (7%) Frame = -3
Query: 385 LFGGRLSCGTKPGQI-IMGDNLEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG + G G + ++G LEFFMS +LA+T L L++ELD+L+ K+Q+P++DI + S Sbjct: 856 LFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSELDNLIHCKLQNPRMDI-QTS 914
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLE---------DKGEQNVLSLL 56 LL A+ LV D G+F Q +++K+ K + G N + L Sbjct: 915 EELLSAIRLLVTEDPCNGRFV---YGRQEQRSKKAKTMFSAAPMSHGGGGNGGDNAKNQL 971
Query: 55 HNLLQRTGQELPSYKVK 5 LL R G + PSYK K Sbjct: 972 QTLLTRAGHDNPSYKTK 988
>tr|Q0JR56|Q0JR56_ORYSJ Os01g0118100 protein OS=Oryza sativa subsp. japonica GN=Os01g0118100 PE=4 SV=1 Length = 1227
Score = 78.6 bits (192), Expect = 1e-13 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 10/137 (7%) Frame = -3
Query: 385 LFGGRLSCGTKPGQI-IMGDNLEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG + G G + ++G LEFFMS +LA+T L L++ELD+L+ K+Q+P++DI + S Sbjct: 1020 LFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSELDNLIHCKLQNPRMDI-QTS 1078
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLE---------DKGEQNVLSLL 56 LL A+ LV D G+F Q +++K+ K + G N + L Sbjct: 1079 EELLSAIRLLVTEDPCNGRFV---YGRQEQRSKKAKTMFSAAPMSHGGGGNGGDNAKNQL 1135
Query: 55 HNLLQRTGQELPSYKVK 5 LL R G + PSYK K Sbjct: 1136 QTLLTRAGHDNPSYKTK 1152
>tr|B8ACY2|B8ACY2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00149 PE=4 SV=1 Length = 1680
Score = 78.6 bits (192), Expect = 1e-13 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 10/137 (7%) Frame = -3
Query: 385 LFGGRLSCGTKPGQI-IMGDNLEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG + G G + ++G LEFFMS +LA+T L L++ELD+L+ K+Q+P++DI + S Sbjct: 1473 LFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSELDNLIHCKLQNPRMDI-QTS 1531
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLE---------DKGEQNVLSLL 56 LL A+ LV D G+F Q +++K+ K + G N + L Sbjct: 1532 EELLSAIRLLVTEDPCNGRFV---YGRQEQRSKKAKTMFSAAPMSHGGGGNGGDNAKNQL 1588
Query: 55 HNLLQRTGQELPSYKVK 5 LL R G + PSYK K Sbjct: 1589 QTLLTRAGHDNPSYKTK 1605
>tr|A9TSB9|A9TSB9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_197737 PE=4 SV=1 Length = 1100
Score = 78.6 bits (192), Expect = 1e-13 Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 1/128 (0%) Frame = -3
Query: 385 LFGGRLSCGTKPGQIIMGDN-LEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG+++ G +PG ++M + +EFFM ++A L+LR ELD L+ K+ +P++ IYE+ Sbjct: 928 LFGGQVNQGGEPGHLVMNNGFMEFFMEPSVALMYLRLRKELDDLISRKLANPEMSIYEEG 987
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLEDKGEQNVLSLLHNLLQRTGQ 29 + L+ AV +++ D+ G F T K K K + +V LL LL R G+ Sbjct: 988 KVLMRAVFEVLDADQCEGSF------TFGRKVKASKPLTRSSDSSDVKGLLQTLLLRAGK 1041
Query: 28 ELPSYKVK 5 + P Y+ + Sbjct: 1042 KPPVYRTR 1049
>tr|A2ZNM7|A2ZNM7_ORYSJ Fructose-bisphosphate aldolase OS=Oryza sativa subsp. japonica GN=OsJ_000149 PE=3 SV=1 Length = 1613
Score = 78.6 bits (192), Expect = 1e-13 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 10/137 (7%) Frame = -3
Query: 385 LFGGRLSCGTKPGQI-IMGDNLEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG + G G + ++G LEFFMS +LA+T L L++ELD+L+ K+Q+P++DI + S Sbjct: 1406 LFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSELDNLIHCKLQNPRMDI-QTS 1464
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLE---------DKGEQNVLSLL 56 LL A+ LV D G+F Q +++K+ K + G N + L Sbjct: 1465 EELLSAIRLLVTEDPCNGRFV---YGRQEQRSKKAKTMFSAAPMSHGGGGNGGDNAKNQL 1521
Query: 55 HNLLQRTGQELPSYKVK 5 LL R G + PSYK K Sbjct: 1522 QTLLTRAGHDNPSYKTK 1538
>tr|Q9C734|Q9C734_ARATH Putative uncharacterized protein F11I4_16 OS=Arabidopsis thaliana GN=F11I4_16 PE=4 SV=1 Length = 1167
Score = 76.3 bits (186), Expect = 7e-13 Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Frame = -3
Query: 385 LFGGRLSCGTKPGQI-IMGDNLEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFG ++S G G + ++G LEFFM LA T L L+ ELD L+Q K+ +PKLDI Sbjct: 963 LFGDKISSGGFDGHLKMLGGYLEFFMKPTLAYTYLSLKRELDELIQNKLVNPKLDIQLYD 1022
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKV---LEDKGEQNVLSLLHNLLQR 38 + L+ A+ LV+ D+ G+F P AK+ K V L++ G +N + L LL R Sbjct: 1023 K-LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLAR 1081
Query: 37 TGQELPSYKVK 5 G P YK + Sbjct: 1082 AGHGSPVYKTR 1092
>tr|A7QXE2|A7QXE2_VITVI Chromosome undetermined scaffold_221, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009138001 PE=4 SV=1 Length = 1136
Score = 76.3 bits (186), Expect = 7e-13 Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Frame = -3
Query: 385 LFGGRLSCGTKPGQIIMGDN-LEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG LS G + M + ++FFM +LA +L+ E D LLQ K+Q+P LDI+++ Sbjct: 933 LFGGTLSRGAMAEHLKMLEGYIDFFMDPSLAECYWKLKEEFDKLLQKKLQNPSLDIHKEG 992
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPEKAKEPKKVLEDKGEQNVLSLLHNLLQRTGQ 29 ++L+ + LV+GD+ G+F +P + + + +D N SLL LL R G Sbjct: 993 KYLMLGIQELVSGDQCEGRFVFGRESKKPREPCDSNRFTKD--GTNPKSLLQTLLMRAGH 1050
Query: 28 ELPSYKVK 5 P YK K Sbjct: 1051 SPPKYKTK 1058
>tr|A5BFZ2|A5BFZ2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013607 PE=4 SV=1 Length = 558
Score = 72.4 bits (176), Expect = 1e-11 Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 7/134 (5%) Frame = -3
Query: 385 LFGGRLSCGTKPGQI-IMGDNLEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGGR+S G G + ++G LEFFM +LA+T L L+ EL+ L+Q K+ +P LD++ ++ Sbjct: 356 LFGGRISRGGIDGHLKMLGGYLEFFMKPDLADTYLSLKKELEELIQQKLLNPTLDVHTNN 415
Query: 208 RHLLDAVTTLVNGDESLGKF----ESVGAVTQPEKAKEPKKVLED--KGEQNVLSLLHNL 47 LL AV LV+ DE G+F + + Q K P +L G N L + Sbjct: 416 -ELLSAVRLLVSEDECNGRFVFGXQLPKSSKQAIKETSPGALLRSGGAGGDNAKGRLQTV 474
Query: 46 LQRTGQELPSYKVK 5 L R G + P YK + Sbjct: 475 LIRGGHQAPVYKTR 488
>tr|Q10CV6|Q10CV6_ORYSJ Helicase associated domain family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g53760 PE=4 SV=1 Length = 1138
Score = 70.9 bits (172), Expect = 3e-11 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Frame = -3
Query: 385 LFGGRLSCGTKPGQIIMGDN-LEFFMSTNLANTILQLRTELDHLLQIKMQDPKLDIYEDS 209 LFGG ++ G+ G + M D ++ FM +L LQL+ ELD L+Q K++DP DI+++ Sbjct: 929 LFGGAVTKGSMAGHLKMLDGYIDLFMDPSLCECYLQLKEELDKLVQKKLEDPSFDIHKEG 988
Query: 208 RHLLDAVTTLVNGDESLGKFESVGAVTQPE-KAKEPKKVLEDKGEQNVLSLLHNLLQRTG 32 +++L A L GD G+F ++ + + K K N SLL LL R G Sbjct: 989 KYILYAAQELAAGDLCEGRFVFGRETSRARLSSSDDTKGNIIKDGMNPKSLLQTLLMRAG 1048
Query: 31 QELPSYKVK 5 P YK K Sbjct: 1049 HTPPKYKTK 1057
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