| BP915561 |
| Clone id |
YMU001_000073_A11 |
| Library |
YMU01 |
| Length |
522 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000073_A11. |
| Accession |
BP915561 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GACCAAAGAACGCTCTCTGCGTCTTTTTCGACTATTCTGTTGACTTGTGCATTCAACAAG
CTGATGCCCGAGTGGATCATCCTACCATACCCAAAGGTCGGGCATCAATCCCTGTTAGAT
CCACGGCAAAGAGTCTGGTACTGCCAACGCTTGAAGAAGGGTTTACTTGTATTGCAACTG
TTCGGAGCATCCGCGCAGCACGTGACCTCCTATCAAGATTGAGGAAATATTCTGAGCCGA
TGAAATGTGATGACCCACCTGACAAATCTGTTGAGCAAGTTTTTGTCAAGTTTCCGAGAA
CACGGCACTTGTTTAATTTAGGAAGTGCGACCGGGGATGATCTGATCATGAATGAAACGG
AGCTTTGTGGCTTCTTGTCTATGAAGGATCCCAACATCCACATAGTTTTGCAAGAAAAGA
TCGATGGTGCCAACCTAGGTATTACATTAGATGCTCAAACAAGAGCTTTCCTAGTTCAAA
ATCGGTCGCATTATGCGAATAGTAAATCGCATACACAGTTTA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q14L37 |
| Definition |
sp|Q14L37|DNLJ_SPICI DNA ligase OS=Spiroplasma citri |
| Align length |
91 |
| Score (bit) |
40.0 |
| E-value |
0.007 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915561|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A11.
(522 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14L37|DNLJ_SPICI DNA ligase OS=Spiroplasma citri GN=ligA PE=... 40 0.007
sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand domain-con... 35 0.28
sp|Q4FPL3|DNLJ_PELUB DNA ligase OS=Pelagibacter ubique GN=ligA P... 33 0.62
sp|Q4S6U8|PP4R3_TETNG Serine/threonine-protein phosphatase 4 reg... 32 1.8
sp|Q6IV72|ZN425_HUMAN Zinc finger protein 425 OS=Homo sapiens GN... 30 6.9
sp|Q18FJ9|MUTS_HALWD DNA mismatch repair protein mutS OS=Haloqua... 30 9.0
sp|O62666|IL16_PANTR Interleukin-16 OS=Pan troglodytes GN=IL16 P... 30 9.0
sp|O62675|IL16_MACMU Interleukin-16 OS=Macaca mulatta GN=IL16 PE... 30 9.0
sp|O62676|IL16_MACFA Interleukin-16 OS=Macaca fascicularis GN=IL... 30 9.0
sp|O62674|IL16_CERAE Interleukin-16 OS=Cercopithecus aethiops GN... 30 9.0
>sp|Q14L37|DNLJ_SPICI DNA ligase OS=Spiroplasma citri GN=ligA PE=3
SV=1
Length = 667
Score = 40.0 bits (92), Expect = 0.007
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Frame = +3
Query: 192 RAARDLLSRLRKYSEPMKCDDPPDK---SVEQVFVKFPRTRHLFNLGSATG-DDLIMNET 359
RA ++L++ ++YSE + D P + + + F K+ T + +LG+A DDLI +
Sbjct: 39 RALQELIAIEQQYSELITIDSPTQRVSGQISEKFNKYVHTSPMLSLGNAFNYDDLIHFDE 98
Query: 360 ELCGFLSMKDPNIHIVLQEKIDGANLGITLD 452
++ F ++ P I + KIDG ++ + D
Sbjct: 99 QIKEFTAL--PEIEYTCELKIDGLSISLVYD 127
>sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand
domain-containing protein 1 OS=Homo sapiens GN=ZZEF1 PE=1
SV=5
Length = 2961
Score = 34.7 bits (78), Expect = 0.28
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Frame = +3
Query: 138 VLPTLEEGFTCIATVRSIRAARDLLSRLRKYSEPMKCDDPPDKSVEQ---------VFVK 290
VL EE I + + + AA++L + L + + D P + ++Q +
Sbjct: 808 VLAASEEEKAPIQSPKGVEAAKELYTHLCDVVDKVDGDSVPMEILKQEVRNTLLNGAAIF 867
Query: 291 FP----RTRHLFNLGSATGDD----LIMNETELCGFLSMKDPNIHIVLQEKIDGANLGIT 446
FP R HLF + + T + L + LC + S KDP ++L EK D A + I+
Sbjct: 868 FPNRQTRRNHLFTMMNVTEQEHKQSLQLTFRSLCTYFSDKDPGGLLLLPEKNDLAKMNIS 927
>sp|Q4FPL3|DNLJ_PELUB DNA ligase OS=Pelagibacter ubique GN=ligA PE=3
SV=1
Length = 676
Score = 33.5 bits (75), Expect = 0.62
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +3
Query: 201 RDLLSRLRKYSEPMKCDDPPDKSV----EQVFVKFPRTRHLFNLGSATGDDLIMN-ETEL 365
+D++ RKY +K + P KS+ + F K + +LG+A ++ + N E ++
Sbjct: 42 KDIIDLERKYKF-LKSEYSPTKSIGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKI 100
Query: 366 CGFLSMKDPN-IHIVLQEKIDGANLGI 443
FLS+KD N I + KIDG + +
Sbjct: 101 INFLSLKDVNTIEYSAEPKIDGISASL 127
>sp|Q4S6U8|PP4R3_TETNG Serine/threonine-protein phosphatase 4
regulatory subunit 3 OS=Tetraodon nigroviridis GN=smek1
PE=3 SV=1
Length = 818
Score = 32.0 bits (71), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 150 LEEGFTCIATVRSIRAARDLLSRLRKYSEPMKCDDPPDKSV 272
LE+G T + T I+ DL+ + K+ E K +P DK +
Sbjct: 677 LEDGETVVRTSDKIKTEEDLMEPISKFMERKKLKEPEDKEI 717
>sp|Q6IV72|ZN425_HUMAN Zinc finger protein 425 OS=Homo sapiens
GN=ZNF425 PE=2 SV=1
Length = 752
Score = 30.0 bits (66), Expect = 6.9
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 117 RSTAKSLVLPTLEEGFTCIATVRSIRAARDLLSRLRKYSEPMKCDDPPDKSVEQVFVKFP 296
R T L +PT ++C + + RDLL R +S+ C P K+ + +
Sbjct: 175 RETPGRLEIPTGPRCYSCYVCRKVFQVRRDLLKHKRSHSKSQLCRYPKYKNSSRGKSELR 234
Query: 297 RTRHL 311
RT+ L
Sbjct: 235 RTQRL 239
>sp|Q18FJ9|MUTS_HALWD DNA mismatch repair protein mutS
OS=Haloquadratum walsbyi (strain DSM 16790) GN=mutS PE=3
SV=1
Length = 932
Score = 29.6 bits (65), Expect = 9.0
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 54 QQADARVDHPTIPKGRASIPVRSTAKSLVLPTLEEGFTCIATVRSIRAARDLLSRLRKYS 233
+QADAR D ++ + SIP KS ++ L E T+ ++A D L +R
Sbjct: 389 EQADAR-DMRSLLQSLDSIP---EIKSALIEVLTETELPAETLEQLQAELDSLDDIRTLI 444
Query: 234 EPMKCDDPP 260
+ C DPP
Sbjct: 445 DTAVCSDPP 453
>sp|O62666|IL16_PANTR Interleukin-16 OS=Pan troglodytes GN=IL16 PE=2
SV=1
Length = 631
Score = 29.6 bits (65), Expect = 9.0
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Frame = +3
Query: 45 LCIQQADARVDHPTIPKGRASIPVRSTAKSLVLPTLEEGFTCIATVRSIRAARDLLSRLR 224
LC+ + + P IPK AS S S + E + + T S+ LS LR
Sbjct: 302 LCLPSSISCAQTPCIPKEGASPTSSSNEDSAANGSAET--SALDTGFSLN-----LSELR 354
Query: 225 KYSEPM---KCDDPPDKSVEQVFVKFPRTRHLFNLGSATGDDLIMNETELCGFLSMKD-P 392
+Y+E + K DD D S Q + + +L S+ ++ E ++ ++K
Sbjct: 355 EYTEGLTEAKEDDDGDHSSLQ------SGQSVISLLSSEELKKLIEEVKVLDEATLKQLD 408
Query: 393 NIHIVLQEKIDGANLGITL 449
+IH+ + K +GA LG +L
Sbjct: 409 SIHVTILHKEEGAGLGFSL 427
>sp|O62675|IL16_MACMU Interleukin-16 OS=Macaca mulatta GN=IL16 PE=2
SV=1
Length = 630
Score = 29.6 bits (65), Expect = 9.0
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +3
Query: 45 LCIQQADARVDHPTIPKGRASIPVRSTAKSLVLPTLEEGFTCIATVRSIRAARDLLSRLR 224
LC+ + + P IPK AS S S + E T S LS LR
Sbjct: 301 LCLPSSLSCAQTPCIPKEGASPTSSSNEDSAANGSAE-------TSASDTGFSLNLSELR 353
Query: 225 KYSEPM---KCDDPPDKSVEQVFVKFPRTRHLFNLGSATGDDLIMNETELCGFLSMKD-P 392
+Y+E + K DD D S Q + + +L S+ ++ E ++ ++K
Sbjct: 354 EYTEGLTEAKEDDDGDHSSHQ------SGQSVISLLSSEELKQLIEEVKVLDEATLKQLD 407
Query: 393 NIHIVLQEKIDGANLGITL 449
+IH+ + K +GA LG +L
Sbjct: 408 SIHVTILHKEEGAGLGFSL 426
>sp|O62676|IL16_MACFA Interleukin-16 OS=Macaca fascicularis GN=IL16
PE=3 SV=1
Length = 630
Score = 29.6 bits (65), Expect = 9.0
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +3
Query: 45 LCIQQADARVDHPTIPKGRASIPVRSTAKSLVLPTLEEGFTCIATVRSIRAARDLLSRLR 224
LC+ + + P IPK AS S S + E T S LS LR
Sbjct: 301 LCLPSSLSCAQTPCIPKEGASPTSSSNEDSAANGSAE-------TSASDTGFSLNLSELR 353
Query: 225 KYSEPM---KCDDPPDKSVEQVFVKFPRTRHLFNLGSATGDDLIMNETELCGFLSMKD-P 392
+Y+E + K DD D S Q + + +L S+ ++ E ++ ++K
Sbjct: 354 EYTEGLTEAKEDDDGDHSSHQ------SGQSVISLLSSEELKQLIEEVKVLDEATLKQLD 407
Query: 393 NIHIVLQEKIDGANLGITL 449
+IH+ + K +GA LG +L
Sbjct: 408 SIHVTILHKEEGAGLGFSL 426
>sp|O62674|IL16_CERAE Interleukin-16 OS=Cercopithecus aethiops
GN=IL16 PE=2 SV=1
Length = 631
Score = 29.6 bits (65), Expect = 9.0
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +3
Query: 45 LCIQQADARVDHPTIPKGRASIPVRSTAKSLVLPTLEEGFTCIATVRSIRAARDLLSRLR 224
LC+ + + P IPK AS S S + E T S LS LR
Sbjct: 302 LCLPSSLSCAQTPCIPKEGASPTSSSNEDSAANGSAE-------TSASDTGFSLNLSELR 354
Query: 225 KYSEPM---KCDDPPDKSVEQVFVKFPRTRHLFNLGSATGDDLIMNETELCGFLSMKD-P 392
+Y+E + K DD D S Q + + +L S+ ++ E ++ ++K
Sbjct: 355 EYTEGLTEAKEDDDGDHSSHQ------SGQSVISLLSSEELKQLIEEVKVLDEATLKQLD 408
Query: 393 NIHIVLQEKIDGANLGITL 449
+IH+ + K +GA LG +L
Sbjct: 409 SIHVTILHKEEGAGLGFSL 427
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A8N3N5 |
| Definition |
tr|A8N3N5|A8N3N5_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) |
| Align length |
174 |
| Score (bit) |
122.0 |
| E-value |
1.0e-26 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915561|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_A11.
(522 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A8N3N5|A8N3N5_COPC7 Putative uncharacterized protein OS=Copri... 122 1e-26
tr|A9RQP9|A9RQP9_PHYPA Predicted protein OS=Physcomitrella paten... 114 4e-24
tr|A9UPG1|A9UPG1_MONBE Predicted protein OS=Monosiga brevicollis... 52 2e-05
tr|A6C078|A6C078_9PLAN Putative uncharacterized protein OS=Planc... 51 4e-05
tr|Q82TK3|Q82TK3_NITEU Possible homolog of eukaryotic DNA ligase... 48 3e-04
tr|B2ERZ1|B2ERZ1_9BACT Putative uncharacterized protein OS=bacte... 48 3e-04
tr|A7ILS0|A7ILS0_XANP2 DNA ligase III-like protein OS=Xanthobact... 48 3e-04
tr|Q0AEN6|Q0AEN6_NITEC ATP dependent DNA ligase OS=Nitrosomonas ... 46 0.001
tr|A6M1J7|A6M1J7_CLOB8 DNA ligase-like protein OS=Clostridium be... 45 0.002
tr|Q97L14|Q97L14_CLOAB Homolog of eukaryotic DNA ligase III OS=C... 44 0.004
tr|A4BVJ7|A4BVJ7_9GAMM Putative uncharacterized protein OS=Nitro... 44 0.005
tr|Q6D569|Q6D569_ERWCT Putative uncharacterized protein OS=Erwin... 42 0.024
tr|Q3B1R2|Q3B1R2_PELLD DNA ligase III-like OS=Pelodictyon luteol... 42 0.024
tr|A1W493|A1W493_ACISJ DNA ligase III-like protein OS=Acidovorax... 41 0.031
tr|A9C377|A9C377_DELAS DNA ligase III-like protein OS=Delftia ac... 40 0.069
tr|B7X5K1|B7X5K1_COMTE DNA ligase III-like protein OS=Comamonas ... 38 0.26
tr|Q54S30|Q54S30_DICDI Putative uncharacterized protein OS=Dicty... 37 0.45
tr|Q2S6V5|Q2S6V5_HAHCH Uncharacterized protein conserved in arch... 37 0.77
tr|B5S3V5|B5S3V5_RALSO Putative uncharacterized protein OS=Ralst... 37 0.77
tr|Q39GF8|Q39GF8_BURS3 Putative uncharacterized protein OS=Burkh... 36 1.3
tr|B4E9T6|B4E9T6_BURCJ Putative uncharacterized protein OS=Burkh... 36 1.3
tr|Q08ZL4|Q08ZL4_STIAU Putative uncharacterized protein OS=Stigm... 35 2.2
tr|Q6FSS8|Q6FSS8_CANGA Strain CBS138 chromosome G complete seque... 35 2.2
tr|A2R9E7|A2R9E7_ASPNC Contig An17c0040, complete genome OS=Aspe... 35 2.2
tr|Q02AK8|Q02AK8_SOLUE tRNA/rRNA methyltransferase (SpoU) OS=Sol... 35 2.9
tr|B3QET7|B3QET7_RHOPT Propionyl-CoA carboxylase OS=Rhodopseudom... 35 2.9
tr|Q6N484|Q6N484_RHOPA Possible methylmalonyl-CoA decarboxylase ... 34 3.8
tr|Q4KCC0|Q4KCC0_PSEF5 Eukaryotic DNA ligase III-like protein OS... 34 3.8
tr|A6GXU9|A6GXU9_FLAPJ Putative uncharacterized protein OS=Flavo... 34 3.8
tr|B6HMX3|B6HMX3_PENCH Pc21g17650 protein OS=Penicillium chrysog... 34 3.8
>tr|A8N3N5|A8N3N5_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_00680 PE=4 SV=1
Length = 870
Score = 122 bits (306), Expect = 1e-26
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Frame = +3
Query: 9 NALCVFFDYSVDLCIQQADARVDHPTIPKG-RASIPVRSTAKSLVLPTLEEGFTCIATVR 185
N +CV+FDY +LC+ +A R DHPT+P G R V +K PT+EEGF + VR
Sbjct: 566 NPVCVWFDYDRELCLARAQLRADHPTLPPGNRVRNAVDQMSKIFERPTVEEGFKAVLIVR 625
Query: 186 SIRAARDLLSRLRKYSEPMKCDDPPDKSVEQVFVKFPRTRHLFNLGSATGDDLIMNETEL 365
S AAR+L+ PP KFPRT HL NLG+AT DD+ ++ L
Sbjct: 626 SFTAARELVGLF---------SPPPG------IYKFPRTPHLINLGAATEDDIQLDLANL 670
Query: 366 CGFLSMKDPNI--HIVLQEKIDGANLGITLDAQTRAFLVQNRSHYANSKSHTQF 521
NI H+V+ EK+DGAN+G +L + + +VQNRSHY NS +H QF
Sbjct: 671 ---------NIPGHVVITEKVDGANMGFSL-SHDKQIIVQNRSHYVNSATHAQF 714
>tr|A9RQP9|A9RQP9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_69356 PE=4 SV=1
Length = 836
Score = 114 bits (284), Expect = 4e-24
Identities = 67/172 (38%), Positives = 94/172 (54%)
Frame = +3
Query: 6 KNALCVFFDYSVDLCIQQADARVDHPTIPKGRASIPVRSTAKSLVLPTLEEGFTCIATVR 185
++A+ V+FD +C Q+ + R+ HPTI GR+ + + + P+ +EGF + TV
Sbjct: 531 ESAVAVYFDVDATICTQRINRRIHHPTIRPGRSDNAMAQMQRLMSKPSRDEGFAAVVTVP 590
Query: 186 SIRAARDLLSRLRKYSEPMKCDDPPDKSVEQVFVKFPRTRHLFNLGSATGDDLIMNETEL 365
S AARD + L PP + KFPRT HL +LG+ATGDDL+
Sbjct: 591 SFPAARDAVHALG--------GTPPLR-------KFPRTPHLIDLGAATGDDLVAP---- 631
Query: 366 CGFLSMKDPNIHIVLQEKIDGANLGITLDAQTRAFLVQNRSHYANSKSHTQF 521
S + +V++EK+DGAN GI+LD +VQNRSH NS SHTQF
Sbjct: 632 ----SFRSSTPFVVVEEKVDGANFGISLDC-NETLVVQNRSHTVNSLSHTQF 678
>tr|A9UPG1|A9UPG1_MONBE Predicted protein OS=Monosiga brevicollis
GN=30816 PE=4 SV=1
Length = 695
Score = 52.0 bits (123), Expect = 2e-05
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +3
Query: 387 DPNIHIVLQEKIDGANLGITLDAQTRAFLVQNRSHYANSKSHTQF 521
+P+ +V+QEK+DGANLG +L R L QNRSHY NS +H QF
Sbjct: 125 NPDRPLVVQEKVDGANLGFSLAPDGRV-LAQNRSHYVNSSTHAQF 168
>tr|A6C078|A6C078_9PLAN Putative uncharacterized protein
OS=Planctomyces maris DSM 8797 GN=PM8797T_22618 PE=4
SV=1
Length = 246
Score = 50.8 bits (120), Expect = 4e-05
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +3
Query: 282 FVKFPRTRHLFNLGSATGDDLIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITLDAQT 461
FVK+PRT HLF + T DD ++E F++ DP+ ++++EKIDG N+G+ + T
Sbjct: 8 FVKYPRTPHLFG-STGTADDKRLSEQASLQFIA--DPS--LIVEEKIDGTNVGLHF-SPT 61
Query: 462 RAFLVQNRSHYANSKSHTQF 521
++Q R H N H Q+
Sbjct: 62 GELVLQCRGHLINEGMHPQY 81
>tr|Q82TK3|Q82TK3_NITEU Possible homolog of eukaryotic DNA ligase
III OS=Nitrosomonas europaea GN=NE1884 PE=4 SV=1
Length = 232
Score = 48.1 bits (113), Expect = 3e-04
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 282 FVKFPRTRHLFNLGSATG-DDLIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITLDAQ 458
F +FP T HL LG DD I+++ E+ L + ++++EK+DGANLGI+LD +
Sbjct: 4 FFRFPNTPHLLWLGQGQPRDDKILSDAEIAALLQDE-----VLIEEKLDGANLGISLD-E 57
Query: 459 TRAFLVQNRSHYANSKSHTQF 521
QNR Y QF
Sbjct: 58 HGELRAQNRGQYLPQPFSGQF 78
>tr|B2ERZ1|B2ERZ1_9BACT Putative uncharacterized protein
OS=bacterium Ellin514 GN=CflavDRAFT_5339 PE=4 SV=1
Length = 246
Score = 48.1 bits (113), Expect = 3e-04
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +3
Query: 282 FVKFPRTRHLFNLGSATGDD--LIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITLDA 455
FVK+PRT HLF T DD L E+E C +KDP+ ++++EK+DG N+GI
Sbjct: 8 FVKYPRTPHLFG-SQGTDDDKHLGHKESEAC----IKDPS--LIVEEKLDGTNVGIHFTT 60
Query: 456 QTRAFLVQNRSHYANSKSHTQF 521
R ++Q R H H Q+
Sbjct: 61 AGR-MVLQCRGHEITEGMHPQY 81
>tr|A7ILS0|A7ILS0_XANP2 DNA ligase III-like protein OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=Xaut_3737
PE=4 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 3e-04
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 282 FVKFPRTRHLFNLGSAT--GDDLIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITLDA 455
F +FP T HL LG AT +D +++ + L+ + +V++EKIDGAN+G +L A
Sbjct: 4 FFRFPSTPHLAWLGGATVPREDKLLSPSHARALLAGE-----VVVEEKIDGANVGFSL-A 57
Query: 456 QTRAFLVQNRSHYANSKSHTQF 521
+ LVQNR Y S QF
Sbjct: 58 KDGTLLVQNRGQYLTSPYTGQF 79
>tr|Q0AEN6|Q0AEN6_NITEC ATP dependent DNA ligase OS=Nitrosomonas
eutropha (strain C91) GN=Neut_1967 PE=4 SV=1
Length = 233
Score = 46.2 bits (108), Expect = 0.001
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 282 FVKFPRTRHLFNLGSATG-DDLIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITLDAQ 458
F +FP T HL LG DD +++++E+ L + ++++EK+DGANLGI+LD +
Sbjct: 4 FFRFPNTPHLLWLGKGQPRDDKLLSDSEIAMLLQDE-----VLIEEKLDGANLGISLD-E 57
Query: 459 TRAFLVQNRSHYANSKSHTQF 521
QNR Y QF
Sbjct: 58 HGELRAQNRGQYLPQPFTGQF 78
>tr|A6M1J7|A6M1J7_CLOB8 DNA ligase-like protein OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052)
GN=Cbei_4367 PE=4 SV=1
Length = 267
Score = 45.1 bits (105), Expect = 0.002
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 288 KFPRTRHLFNLGSATGDDLIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITLDAQTRA 467
K+PRTRH+ GD+ + + F +KD +IV++EK+DGAN GI+ D +
Sbjct: 6 KYPRTRHIDGSRLQAGDE----DLKSVKFEVIKDK--YIVVEEKVDGANTGISFD-NSGN 58
Query: 468 FLVQNRSHYAN 500
L+Q+R H+ N
Sbjct: 59 LLLQSRGHFFN 69
>tr|Q97L14|Q97L14_CLOAB Homolog of eukaryotic DNA ligase III
OS=Clostridium acetobutylicum GN=CA_C0752 PE=4 SV=1
Length = 265
Score = 44.3 bits (103), Expect = 0.004
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +3
Query: 270 VEQVFVKFPRTRHLFNLGSATGDDLIMNETELCGFLSMKDPNIHIVLQEKIDGANLGITL 449
+E+++ K+PRT HL GD+ +L G N VL+EK+DGAN GI+
Sbjct: 1 MERIY-KYPRTPHLEGSRFQQGDE------DLEGIKFENIKNRFCVLEEKVDGANCGISF 53
Query: 450 DAQTRAFLVQNRSHYAN 500
D + +L Q+R H+ N
Sbjct: 54 DTNGKMYL-QSRGHFLN 69
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