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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915570
Clone id YMU001_000073_B10
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACAACTTGCTGCGCTCATTTCCTCCTCCAAAAACTCATGCACCATGGCTGCCAAGCAG
ACAGTACTGGGATCATCATGCGGACTTCCGCTGCTGCTGTAATATGTGGTAGTAGAGGTA
GGTTGGAGCCGAGGATTCTGTGCAGCGTTTGTCAATGGATCTGTGATGTGCTTGAAGCAA
ATGGGCTGCGCAGTCAAAGATGGCGCAGCACGGTTTGCGAGCGCACTGTGAAATGCAGGC
AATGCACGAGCGGTAACAGGAACTGGAGTGGGCGCGGAAGGGACTGTGGCCGGCCTCTGA
GAAGCGGCAGCCCTGGCATGAGTGGAAGATGCAGATGAGGAGGAAGACGTCGAAGAAACA
GACCGCAAGGCATGAAGACCTGGCATACTGCGCTCTTCTTCTCACTCTCTCAATTCGAAT
TGCAACTGTCCAGTCCAAGAACCGATCAAGCTACTTGGTTGTGGCTAGAGAATCCCTCTC
GGCCCCCTTTCTC
■■Homology search results ■■ -
sp_hit_id Q68LP1
Definition sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus
Align length 35
Score (bit) 33.9
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915570|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_B10.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus no...    34   0.41 
sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus mus...    34   0.41 
sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sa...    34   0.41 
sp|Q64507|KRA51_MOUSE Keratin-associated protein 5-1 OS=Mus musc...    33   0.55 
sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus ...    33   0.92 
sp|Q39635|Y38K_CORSE Uncharacterized 38.1 kDa protein OS=Corydal...    32   1.6  
sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo sap...    31   2.7  
sp|Q6UFS5|ZN503_DANRE Zinc finger protein 503 OS=Danio rerio GN=...    31   3.5  
sp|Q9D5Z7|KRA52_MOUSE Keratin-associated protein 5-2 OS=Mus musc...    31   3.5  
sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo sa...    31   3.5  
sp|P56679|IBBB_PEA Seed trypsin/chymotrypsin inhibitor IVB OS=Pi...    31   3.5  
sp|Q2TA51|KRA55_MOUSE Keratin associated protein 5-5 OS=Mus musc...    30   4.6  
sp|P34256|YKA4_CAEEL Uncharacterized protein B0303.4 OS=Caenorha...    30   5.9  
sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis ...    30   6.0  
sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis ...    30   6.0  
sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus musc...    30   6.0  
sp|Q9BYR0|KRA47_HUMAN Keratin-associated protein 4-7 OS=Homo sap...    30   6.0  
sp|Q9BYQ5|KRA46_HUMAN Keratin-associated protein 4-6 OS=Homo sap...    30   7.9  

>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus
           norvegicus GN=Mib2 PE=2 SV=2
          Length = 971

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus
           musculus GN=Mib2 PE=1 SV=2
          Length = 973

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo
           sapiens GN=MIB2 PE=1 SV=3
          Length = 1013

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 148 ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 182


>sp|Q64507|KRA51_MOUSE Keratin-associated protein 5-1 OS=Mus
           musculus GN=Krtap5-1 PE=2 SV=1
          Length = 230

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 336 ICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCARKPCCAIFDCA 187
           +C   SC GC  S  G         SC  SC  C S C +  CC +  C+
Sbjct: 58  VCSCSSCGGCGSSCGG-------CGSCGSSCGGCGSSCCKPVCCCVPVCS 100


>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus
           gallus GN=MIB2 PE=2 SV=1
          Length = 954

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +G+R  RW+  +C     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKMCFDYDLCTQCYMNNKH 124


>sp|Q39635|Y38K_CORSE Uncharacterized 38.1 kDa protein OS=Corydalis
           sempervirens PE=2 SV=1
          Length = 338

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 191 QSKMAQHGLRAHCEMQAMHER*QELEW------ARKGLWPASEKRQPWHEWKMQMR 340
           Q KM + GL  H    A  +R Q  +W      AR GLW +S   +PW EW+   R
Sbjct: 283 QEKMLKKGLAWH--YTAYDKRPQLSKWEEKARAARVGLWASSNPEKPW-EWRKNKR 335


>sp|Q701N2|KRA55_HUMAN Keratin-associated protein 5-5 OS=Homo
           sapiens GN=KRTAP5-5 PE=2 SV=2
          Length = 237

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -2

Query: 318 CQGCRFSEAGHSPFRAHSSSCYRSCIA---CISQCARKPCCAIFDC 190
           C  C  S+ G   +    SSC + C     C S C +  CC  + C
Sbjct: 139 CGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSSCCKPYCC 184


>sp|Q6UFS5|ZN503_DANRE Zinc finger protein 503 OS=Danio rerio
           GN=znf503 PE=1 SV=1
          Length = 563

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/65 (36%), Positives = 27/65 (41%)
 Frame = -2

Query: 321 SCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCARKPCCAIFDCAAHLLQAHHRSIDKRC 142
           S  GC  S+AG SP    S     S   C     R P C  + CA+HL  A   S    C
Sbjct: 328 SSLGC--SKAGSSPLAGASPPSIMSASLC-----RDPYCLSYHCASHLAGAAGAS----C 376

Query: 141 TESSA 127
           T  SA
Sbjct: 377 THDSA 381


>sp|Q9D5Z7|KRA52_MOUSE Keratin-associated protein 5-2 OS=Mus
           musculus GN=Krtap5-2 PE=2 SV=1
          Length = 189

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
 Frame = -2

Query: 333 CIFHSCQGCRFSEAGHSPFRAHSSSCYRSCI---ACISQCARKPCCAIFDCAA 184
           C    C+ C    +   P    SS C  SC     C S C  KPCC    C A
Sbjct: 130 CQSSCCKPCCCQSSCCKPCCCQSSCCQSSCCKPCCCQSSCC-KPCCCQSSCCA 181


>sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo
           sapiens GN=KRTAP10-2 PE=2 SV=1
          Length = 255

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
 Frame = -2

Query: 384 ARSSCLAVCFFDVFL-LICIFHSCQGCRFS---EAGHSPFRAHSSSCYRSCIACISQCAR 217
           A SSC   C   V    +C   +C     S   ++   P    SS C +SC  C+S C +
Sbjct: 132 ASSSCQQSCRVPVCCKAVCCVPTCSESSSSCCQQSSCQPACCTSSPCQQSC--CVSVCCK 189

Query: 216 KPCCAIFDC 190
             CC    C
Sbjct: 190 PVCCKSICC 198
tr_hit_id Q5F665
Definition tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Align length 40
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915570|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_B10.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein OS=Neiss...    35   2.5  
tr|B4RPD0|B4RPD0_NEIG2 Putative uncharacterized protein OS=Neiss...    35   2.5  
tr|Q08AY2|Q08AY2_XENLA LOC100158387 protein OS=Xenopus laevis GN...    34   4.2  
tr|B1WBC4|B1WBC4_XENLA LOC100158426 protein OS=Xenopus laevis GN...    34   4.2  
tr|B1H2P9|B1H2P9_XENTR Mib2 protein OS=Xenopus tropicalis GN=mib...    34   4.2  
tr|B2RUG2|B2RUG2_MOUSE Mib2 protein OS=Mus musculus GN=Mib2 PE=2...    34   4.2  
tr|A2A9P9|A2A9P9_MOUSE Mindbomb homolog 2 (Drosophila) OS=Mus mu...    34   4.2  
tr|B4DZ57|B4DZ57_HUMAN cDNA FLJ58785, highly similar to Ubiquiti...    34   4.2  
tr|B4DEI6|B4DEI6_HUMAN cDNA FLJ60232, highly similar to Ubiquiti...    34   4.2  
tr|A2AGM8|A2AGM8_HUMAN Mindbomb homolog 2 (Drosophila) OS=Homo s...    34   4.2  
tr|A2AGM7|A2AGM7_HUMAN Mindbomb homolog 2 (Drosophila) OS=Homo s...    34   4.2  
tr|O27309|O27309_METTH Polyferredoxin OS=Methanobacterium thermo...    34   4.2  
tr|B3MN49|B3MN49_DROAN GF14244 OS=Drosophila ananassae GN=GF1424...    33   5.5  
tr|Q64526|Q64526_MOUSE Keratin associated protein 9-1 OS=Mus mus...    33   5.6  
tr|A4IF42|A4IF42_MOUSE ENSMUSG00000056885 protein (Fragment) OS=...    33   5.6  
tr|B6MH29|B6MH29_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|B6M6M4|B6M6M4_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|B4MU66|B4MU66_DROWI GK23988 OS=Drosophila willistoni GN=GK239...    33   7.1  
tr|B6STR9|B6STR9_MAIZE Nuclease OS=Zea mays PE=2 SV=1                  33   7.3  
tr|B4G0V2|B4G0V2_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.3  
tr|Q008W0|Q008W0_CIOIN Gamma-carboxyglutamic acid protein 4 OS=C...    33   7.3  
tr|B8LNR3|B8LNR3_PICSI Putative uncharacterized protein OS=Picea...    33   9.3  
tr|A9SZ03|A9SZ03_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   9.3  
tr|A4SB24|A4SB24_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   9.3  
tr|Q9VIU5|Q9VIU5_DROME CG10137 OS=Drosophila melanogaster GN=CG1...    33   9.3  
tr|Q4DBN4|Q4DBN4_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.3  
tr|B4PB03|B4PB03_DROYA GE13265 OS=Drosophila yakuba GN=GE13265 P...    33   9.3  
tr|B4M902|B4M902_DROVI GJ18223 OS=Drosophila virilis GN=GJ18223 ...    33   9.3  
tr|B4I5X0|B4I5X0_DROSE GM17360 OS=Drosophila sechellia GN=GM1736...    33   9.3  

>tr|Q5F665|Q5F665_NEIG1 Putative uncharacterized protein
           OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
           GN=NGO1701 PE=4 SV=1
          Length = 151

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 336 ICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCAR 217
           +C+  +C+ C  +   HS   A   +CY SC+ CI +C +
Sbjct: 110 VCL-EACKQCAKACKEHSAHHAECKACYESCLDCIKECEK 148


>tr|B4RPD0|B4RPD0_NEIG2 Putative uncharacterized protein
           OS=Neisseria gonorrhoeae (strain NCCP11945) GN=NGK_2099
           PE=4 SV=1
          Length = 151

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 336 ICIFHSCQGCRFSEAGHSPFRAHSSSCYRSCIACISQCAR 217
           +C+  +C+ C  +   HS   A   +CY SC+ CI +C +
Sbjct: 110 VCL-EACKQCAKACKEHSAHHAECKACYESCLDCIKECEK 148


>tr|Q08AY2|Q08AY2_XENLA LOC100158387 protein OS=Xenopus laevis
           GN=LOC100158387 PE=2 SV=1
          Length = 916

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +G+R  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKVCFDYDLCTQCYMNNKH 124


>tr|B1WBC4|B1WBC4_XENLA LOC100158426 protein OS=Xenopus laevis
           GN=mib2 PE=2 SV=1
          Length = 951

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +G+R  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKVCFDYDLCTQCYMNNKH 124


>tr|B1H2P9|B1H2P9_XENTR Mib2 protein OS=Xenopus tropicalis GN=mib2
           PE=2 SV=1
          Length = 951

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +G+R  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGIRGMRWKCKVCFDYDLCTQCYMNNKH 124


>tr|B2RUG2|B2RUG2_MOUSE Mib2 protein OS=Mus musculus GN=Mib2 PE=2
           SV=1
          Length = 946

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>tr|A2A9P9|A2A9P9_MOUSE Mindbomb homolog 2 (Drosophila) OS=Mus
           musculus GN=Mib2 PE=4 SV=1
          Length = 921

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKH 124


>tr|B4DZ57|B4DZ57_HUMAN cDNA FLJ58785, highly similar to Ubiquitin
           ligase protein MIB2 (EC 6.3.2.-) OS=Homo sapiens PE=2
           SV=1
          Length = 1056

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 191 ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 225


>tr|B4DEI6|B4DEI6_HUMAN cDNA FLJ60232, highly similar to Ubiquitin
           ligase protein MIB2 (EC 6.3.2.-) OS=Homo sapiens PE=2
           SV=1
          Length = 955

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 124


>tr|A2AGM8|A2AGM8_HUMAN Mindbomb homolog 2 (Drosophila) OS=Homo
           sapiens GN=MIB2 PE=4 SV=1
          Length = 919

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 159 ICDVLEANGLRSQRWRSTVCERTVKCRQCTSGNRN 263
           ICD  + +GLR  RW+  VC     C QC   N++
Sbjct: 90  ICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKH 124