NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915574
Clone id YMU001_000073_C02
Library
Length 289
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAATTCGCGGCCGCGGGAATTTGTTTTTTTTCTTATCTCTTAGGAAATTGCGAC
AATCCTTTTTGTAATGGCCCTTCTTGTGGCAATAGTAACACTTGACATTTCTTGCATTGT
GGTCTCTACTTTGGTTCCCATGTCTGCTAGGACTACGAGGATTTCTCTCTCTACTTTTGC
TTCTGTATTTTTTCGTGTCACGGTCTCTTGCCTTCATTGAACTGCCAGCCATATATGCAT
CTCCATGACTAGCACCATCGAGAGATTTATGTTGAATCTCTTCAATGAG
■■Homology search results ■■ -
sp_hit_id Q08170
Definition sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 OS=Homo sapiens
Align length 39
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915574|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_C02.
         (252 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 OS...    35   0.15 
sp|Q5R8J6|RSRC2_PONAB Arginine/serine-rich coiled-coil protein 2...    34   0.20 
sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2...    34   0.20 
sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Ar...    33   0.44 
sp|A6QLS2|RSRC2_BOVIN Arginine/serine-rich coiled-coil protein 2...    33   0.44 
sp|Q5PQR4|RSRC2_RAT Arginine/serine-rich coiled-coil protein 2 O...    33   0.57 
sp|A2RTL5|RSRC2_MOUSE Arginine/serine-rich coiled-coil protein 2...    33   0.57 
sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophi...    32   0.75 
sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen...    32   0.97 
sp|Q6NWC6|CPSF6_DANRE Cleavage and polyadenylation specificity f...    32   1.3  
sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Ni...    31   1.7  
sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 O...    31   1.7  
sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 O...    31   1.7  
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-r...    31   2.2  
sp|Q6NVF9|CPSF6_MOUSE Cleavage and polyadenylation specificity f...    31   2.2  
sp|Q16630|CPSF6_HUMAN Cleavage and polyadenylation specificity f...    31   2.2  
sp|Q5ZL34|CPSF6_CHICK Cleavage and polyadenylation specificity f...    31   2.2  
sp|Q0P5D2|CPSF6_BOVIN Cleavage and polyadenylation specificity f...    31   2.2  
sp|Q54QQ2|Y5634_DICDI Uncharacterized protein DDB_G0283697 OS=Di...    30   2.8  
sp|Q5XHJ5|RSRC2_XENTR Arginine/serine-rich coiled-coil protein 2...    30   2.8  
sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tr...    30   2.8  
sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus la...    30   2.8  
sp|Q6DDW4|CPSF6_XENLA Cleavage and polyadenylation specificity f...    30   2.8  
sp|Q5NVH8|CPSF6_PONAB Cleavage and polyadenylation specificity f...    30   2.8  
sp|Q6C1V6|CWC25_YARLI Pre-mRNA-splicing factor CWC25 OS=Yarrowia...    30   3.7  
sp|Q6ZUT1|CK057_HUMAN Uncharacterized protein C11orf57 OS=Homo s...    30   3.7  
sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogas...    30   4.8  
sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa O...    30   4.8  
sp|Q5KNY5|PPIL4_CRYNE Peptidyl-prolyl cis-trans isomerase-like 4...    30   4.8  
sp|Q9H4Z3|PCIF1_HUMAN Phosphorylated CTD-interacting factor 1 OS...    30   4.8  

>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4
           OS=Homo sapiens GN=SFRS4 PE=1 SV=2
          Length = 494

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = -1

Query: 192 AGSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNA 76
           +GS  +++ R   + RS+S++   RSPS+  ++SR H+A
Sbjct: 224 SGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSA 262


>sp|Q5R8J6|RSRC2_PONAB Arginine/serine-rich coiled-coil protein 2
           OS=Pongo abelii GN=RSRC2 PE=2 SV=1
          Length = 435

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 237 QHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRER-NPRSPSRHGNQSRDHN 79
           + KS  G SH  +       ++R R+ KK RS+SRER   RS SR   +SR  +
Sbjct: 116 ERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRS 169


>sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2
           OS=Homo sapiens GN=RSRC2 PE=1 SV=1
          Length = 434

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 237 QHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRER-NPRSPSRHGNQSRDHN 79
           + KS  G SH  +       ++R R+ KK RS+SRER   RS SR   +SR  +
Sbjct: 116 ERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRS 169


>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B
           OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2
          Length = 589

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 177 KARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNAR 73
           K+RDRD  + RSK R+R+     RH ++SR+ + +
Sbjct: 84  KSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEK 118


>sp|A6QLS2|RSRC2_BOVIN Arginine/serine-rich coiled-coil protein 2
           OS=Bos taurus GN=RSRC2 PE=2 SV=2
          Length = 435

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 237 QHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRER-NPRSPSRHGNQSRDHN 79
           + KS  G SH  +       ++R R+ KK RS+SR+R   RS SR   +SR  +
Sbjct: 116 ERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRERKKSRSRS 169


>sp|Q5PQR4|RSRC2_RAT Arginine/serine-rich coiled-coil protein 2
           OS=Rattus norvegicus GN=Rsrc2 PE=2 SV=1
          Length = 376

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 237 QHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRER-NPRSPSRHGNQSRDHN 79
           + KS  G SH  +       ++R R+ KK RS+SR+R   RS SR   +SR  +
Sbjct: 57  ERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRS 110


>sp|A2RTL5|RSRC2_MOUSE Arginine/serine-rich coiled-coil protein 2
           OS=Mus musculus GN=Rsrc2 PE=2 SV=1
          Length = 376

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 237 QHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRER-NPRSPSRHGNQSRDHN 79
           + KS  G SH  +       ++R R+ KK RS+SR+R   RS SR   +SR  +
Sbjct: 57  ERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRS 110


>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila
            melanogaster GN=N PE=1 SV=3
          Length = 2703

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 3    YLLGNCD-NPFCNGPSCGNSNT*HFLHCGLYFGSHVC*DYEDF 128
            Y L  CD NP  NG +C   N  +  HC   F    C +Y D+
Sbjct: 1059 YKLNKCDSNPCLNGATCHEQNNEYTCHCPSGFTGKQCSEYVDW 1101


>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase mog-5 OS=Caenorhabditis
           elegans GN=mog-5 PE=2 SV=1
          Length = 1200

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 231 KSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNARN 70
           K L   S      + S  ++RDR  ++ RS  R+R  RS SR   + RD   R+
Sbjct: 144 KRLQKESDSKRNRSRSRSRSRDRKRRRSRSGDRDRRRRSRSREDRRDRDRRDRD 197


>sp|Q6NWC6|CPSF6_DANRE Cleavage and polyadenylation specificity
           factor subunit 6 OS=Danio rerio GN=cpsf6 PE=2 SV=1
          Length = 545

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 225 LDGASHGDAYMAGSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHN 79
           ++  S+G   +AG   ++R+RD  + R KSR    RS  RH +  R+ +
Sbjct: 473 IESKSYGS--VAGRRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERS 519
tr_hit_id B4J6Q7
Definition tr|B4J6Q7|B4J6Q7_DROGR GH21172 OS=Drosophila grimshawi
Align length 40
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915574|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_C02.
         (252 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4J6Q7|B4J6Q7_DROGR GH21172 OS=Drosophila grimshawi GN=GH2117...    38   0.29 
tr|A4REA9|A4REA9_MAGGR Putative uncharacterized protein OS=Magna...    38   0.29 
tr|B4LMQ9|B4LMQ9_DROVI GJ21791 OS=Drosophila virilis GN=GJ21791 ...    37   0.65 
tr|Q16PT8|Q16PT8_AEDAE ATP-dependent RNA helicase OS=Aedes aegyp...    36   0.85 
tr|Q4T5W3|Q4T5W3_TETNG Chromosome 3 SCAF9073, whole genome shotg...    36   1.1  
tr|B4KNB9|B4KNB9_DROMO GI18767 OS=Drosophila mojavensis GN=GI187...    36   1.1  
tr|B3LAT7|B3LAT7_PLAKH Pre-mRNA splicing factor, putative OS=Pla...    36   1.1  
tr|Q1EAC1|Q1EAC1_COCIM Putative uncharacterized protein OS=Cocci...    35   1.4  
tr|B4JVH2|B4JVH2_DROGR GH22675 OS=Drosophila grimshawi GN=GH2267...    35   1.9  
tr|B2B5T3|B2B5T3_PODAN Predicted CDS Pa_2_5700 (Fragment) OS=Pod...    35   2.5  
tr|A2XH06|A2XH06_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|B4GNW5|B4GNW5_DROPE GL13712 OS=Drosophila persimilis GN=GL137...    34   3.2  
tr|Q59EF5|Q59EF5_HUMAN Splicing factor, arginine/serine-rich 4 v...    34   3.2  
tr|Q53F45|Q53F45_HUMAN Splicing factor, arginine/serine-rich 4 v...    34   3.2  
tr|A8K644|A8K644_HUMAN cDNA FLJ76859, highly similar to Homo sap...    34   3.2  
tr|Q7S7J4|Q7S7J4_NEUCR Predicted protein OS=Neurospora crassa GN...    34   3.2  
tr|B8M6B3|B8M6B3_9EURO Putative uncharacterized protein OS=Talar...    34   4.2  
tr|Q6NVN5|Q6NVN5_XENTR LUC7-like 2 OS=Xenopus tropicalis GN=luc7...    33   5.5  
tr|Q28EN5|Q28EN5_XENTR LUC7-like 2 (S. cerevisiae) OS=Xenopus tr...    33   5.5  
tr|B2ASE8|B2ASE8_PODAN Predicted CDS Pa_1_23280 OS=Podospora ans...    33   5.5  
tr|A4RCB3|A4RCB3_MAGGR Putative uncharacterized protein OS=Magna...    33   5.5  
tr|B5X385|B5X385_SALSA Splicing factor, arginine/serine-rich 10 ...    33   7.2  
tr|Q7RDV5|Q7RDV5_PLAYO PWI domain, putative OS=Plasmodium yoelii...    33   7.2  
tr|B6NLM9|B6NLM9_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|B3NTM0|B3NTM0_DROER GG17877 OS=Drosophila erecta GN=GG17877 P...    33   7.2  
tr|Q6GLC1|Q6GLC1_XENTR LUC7-like (S. cerevisiae) OS=Xenopus trop...    33   9.3  
tr|Q4S4P5|Q4S4P5_TETNG Chromosome 2 SCAF14738, whole genome shot...    33   9.3  
tr|Q9CSJ3|Q9CSJ3_MOUSE Putative uncharacterized protein (Fragmen...    33   9.3  
tr|Q922F2|Q922F2_MOUSE Rsrc2 protein (Fragment) OS=Mus musculus ...    33   9.3  
tr|Q8BI46|Q8BI46_MOUSE Putative uncharacterized protein OS=Mus m...    33   9.3  

>tr|B4J6Q7|B4J6Q7_DROGR GH21172 OS=Drosophila grimshawi GN=GH21172
           PE=4 SV=1
          Length = 1378

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = -1

Query: 189 GSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNARN 70
           GS+   RDR +++  S+SR R+PRS  R G++ RD   R+
Sbjct: 440 GSNANDRDRGSRRRGSRSRSRSPRSSRRRGSRDRDRMERS 479


>tr|A4REA9|A4REA9_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_00716 PE=4 SV=1
          Length = 489

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 213 SHGDAYMAGSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNARN 70
           S  D Y       +RDRD K YR++SR R+PR   R       H +R+
Sbjct: 406 SRRDRYQESRRDDSRDRDRKSYRTRSRSRSPRRQDRRDYDRDRHTSRS 453


>tr|B4LMQ9|B4LMQ9_DROVI GJ21791 OS=Drosophila virilis GN=GJ21791
           PE=4 SV=1
          Length = 1344

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 189 GSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNARN 70
           G +   RDR +++  S+SR R+PRS  R G++ RD   R+
Sbjct: 436 GGNANDRDRGSRRRSSRSRSRSPRSSRRRGSRDRDRMERS 475


>tr|Q16PT8|Q16PT8_AEDAE ATP-dependent RNA helicase OS=Aedes aegypti
           GN=AAEL011534 PE=4 SV=1
          Length = 1238

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -1

Query: 177 KARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNAR 73
           ++RD + K+ RS+ R+R  RS SRH ++SRD   R
Sbjct: 200 RSRDAERKRSRSRDRDRRRRSRSRHRSRSRDKERR 234


>tr|Q4T5W3|Q4T5W3_TETNG Chromosome 3 SCAF9073, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00006614001 PE=4 SV=1
          Length = 280

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
 Frame = -1

Query: 240 IQHKSLDGASHGDAYMAGSSM-----------KARDRDTKKYRSKSRERNPRSPSRHGNQ 94
           I+H   D AS  D    GS             + RD+D ++ R++SRER  RS SR   +
Sbjct: 78  IKHSGRDDASRYDDRAIGSERDRGERRERSRERDRDKDRERRRTRSRERRRRSRSRERER 137

Query: 93  SRDHNARN 70
            R+ + R+
Sbjct: 138 DRERHVRD 145


>tr|B4KNB9|B4KNB9_DROMO GI18767 OS=Drosophila mojavensis GN=GI18767
           PE=4 SV=1
          Length = 1377

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 189 GSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNARN 70
           G +   RDR +++  S+SR R+PRS  R G++ RD   R+
Sbjct: 441 GGNGNDRDRGSRRRSSRSRSRSPRSSRRRGSRDRDRMERS 480


>tr|B3LAT7|B3LAT7_PLAKH Pre-mRNA splicing factor, putative
           OS=Plasmodium knowlesi (strain H) GN=PKH_133960 PE=4
           SV=1
          Length = 701

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 177 KARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNARNV 67
           ++RDRD ++ R  S ERN +  S H    RDH  R++
Sbjct: 510 RSRDRDRRRKRRTSEERNEKKHSSHDKSHRDHRDRSL 546


>tr|Q1EAC1|Q1EAC1_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_00492 PE=4 SV=1
          Length = 720

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 246 EEIQHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHN 79
           E+ Q+ S++    G+   AG +    DR  K+  S+SR R    P+ HG Q+RD +
Sbjct: 557 EKAQNLSVENGGSGEQSPAGVNA---DRREKRAHSRSRSRGNLDPNAHGRQNRDRS 609


>tr|B4JVH2|B4JVH2_DROGR GH22675 OS=Drosophila grimshawi GN=GH22675
           PE=4 SV=1
          Length = 1243

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 246 EEIQHKSLDGASHGDAYMAGSSMKARDRDTKKYRSKSRERNPRSPSRHGNQSRDHNAR 73
           E +  K  D       + A SS  +R+R  +K RS+SRER+ R+  R     RD + R
Sbjct: 154 ERLLEKEKDKEKESKRHPASSSSSSRERSKRKERSRSRERH-RNREREREHDRDRDRR 210


>tr|B2B5T3|B2B5T3_PODAN Predicted CDS Pa_2_5700 (Fragment)
           OS=Podospora anserina PE=4 SV=1
          Length = 307

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 171 RDRDTKKYRSKSRERNPRSPSR--HGNQSRDHNAR 73
           RDRD+++YRS SR+RN R  SR   G+  RD   +
Sbjct: 75  RDRDSRRYRSGSRDRNDRRRSRSPRGDNRRDDRGK 109