NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915579
Clone id YMU001_000073_C07
Library
Length 297
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGAAACATGTAAAGTGTACAGAGTTCCTGACTTTCTGCCATGTGCTACAGTCATCGAAC
CTTTGGAGATCCTTCAAGCGTTGTTCCCAAAAACTGTCACATAACCCGCATCATCCAACT
TCCCTGTACTAATCAAGCTCTTTCGGATTGCTGGAACATATCTGACATTCTTGAGCCATA
AAGAAGAGCCATTCTGAAACTTCAACTGCACATCTCCCACTCCAAGTATGTCACAAACCT
GCTCATTGCCAAGTCTGACTTAATCTTTAGTAGCCACATATGATGTAAACCACTCTT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 81
Score (bit) 69.7
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915579|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_C07.
         (297 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    70   4e-12
sp|P87293|YDN1_SCHPO Uncharacterized protein C16A10.01 OS=Schizo...    30   5.0  
sp|Q07TX5|DAPD_RHOP5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylat...    29   6.5  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 36/81 (44%), Positives = 51/81 (62%)
 Frame = -3

Query: 259 VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGKLDDAGYVTVFGNN 80
           V++GN     I G+GD+ +K   G +L LK+VR+VP +R +LIS   LD  GY + F N 
Sbjct: 322 VKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQ 381

Query: 79  A*RISKGSMTVAHGRKSGTLY 17
             R++KGS+ +A G   GTLY
Sbjct: 382 KWRLTKGSLVIAKGVARGTLY 402


>sp|P87293|YDN1_SCHPO Uncharacterized protein C16A10.01
           OS=Schizosaccharomyces pombe GN=SPAC16A10.01 PE=2 SV=1
          Length = 830

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 38  AMCYSHRTFGDPSSVVPKNCHI-TRIIQLPCTNQALSDC 151
           A+C +   +G PS  + ++  I +RI+QLP T   L DC
Sbjct: 401 AVCEAMMLYGSPSHKIQQSLRIASRILQLPATFLYLPDC 439


>sp|Q07TX5|DAPD_RHOP5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-succinyltransferase OS=Rhodopseudomonas palustris
           (strain BisA53) GN=dapD PE=3 SV=1
          Length = 281

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 286 TSYVATKD*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGKLDD 110
           T   ATK  VR   EQ  D+L  G+V++  +  S  W+ N      ++K+++ + +L+D
Sbjct: 19  TVSAATKGEVRDAVEQALDLLDKGEVRVAAREASGAWVVN----QWLKKAVLLSFRLND 73
tr_hit_id A5C9D7
Definition tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 96
Score (bit) 87.8
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915579|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_C07.
         (297 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis...    87   3e-16
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b...    86   1e-15
tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis...    81   2e-14
tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis...    80   4e-14
tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5BEP3|A5BEP3_VITVI Putative uncharacterized protein OS=Vitis...    77   4e-13
tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis...    77   4e-13
tr|A5BQG4|A5BQG4_VITVI Putative uncharacterized protein OS=Vitis...    77   6e-13
tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis...    77   6e-13
tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis...    76   7e-13
tr|A5B2M3|A5B2M3_VITVI Putative uncharacterized protein OS=Vitis...    76   7e-13
tr|A5AN26|A5AN26_VITVI Putative uncharacterized protein OS=Vitis...    76   7e-13
tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis...    75   1e-12
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    75   2e-12
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    75   2e-12
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    75   2e-12
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis...    74   3e-12

>tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007304 PE=4 SV=1
          Length = 1362

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 43/96 (44%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
 Frame = -3

Query: 295 EWFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           ++FTSY +     VR+GN+     +G+GDV+L+  NG+ L LKNV+++P IR +LISTGK
Sbjct: 286 DFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGK 345

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTL 11
           LDD G+   F ++  ++++GSM +A G KS +LY +
Sbjct: 346 LDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLM 381


>tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018405 PE=4 SV=1
          Length = 1302

 Score = 87.4 bits (215), Expect = 3e-16
 Identities = 43/96 (44%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
 Frame = -3

Query: 295 EWFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           ++FTSY +     VR+GN+     +G+GDV+L+  NG+ L LKNV+++P IR +LISTGK
Sbjct: 173 DFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGK 232

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTL 11
           LDD G+   F ++  ++++GSM +A G KS +LY +
Sbjct: 233 LDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSLYLM 268


>tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea
           batatas PE=4 SV=1
          Length = 1415

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 47/99 (47%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
 Frame = -3

Query: 295 EWFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           E+FTSY       +R+GN+    + G G V L+  NG+ L LKNV++ P IR +LISTGK
Sbjct: 304 EFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNGTKLVLKNVKHAPDIRLNLISTGK 363

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTLHVS 2
           LDD G+   FG+   +I+KGS+ VA G KS  LY+L  S
Sbjct: 364 LDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSS 402


>tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038145 PE=4 SV=1
          Length = 579

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 45/98 (45%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = -3

Query: 295 EWFTSYV-ATKD*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           ++F+SY   +   V +GNE  C+I+G+GDV L+   G  L LK+VR+VP +R SLIS GK
Sbjct: 183 DFFSSYTNGSFGWVXMGNEAKCEIVGMGDVDLETXIGCKLVLKDVRHVPXMRFSLISVGK 242

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTLHV 5
           LDD GY +  G    +I+KGS+ +  G+K+ TLY + V
Sbjct: 243 LDDEGYHSHLGEGKWKITKGSLVLXRGKKNNTLYKIEV 280


>tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024474 PE=4 SV=1
          Length = 1207

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 41/96 (42%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
 Frame = -3

Query: 295 EWFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           ++FTSY +     VR+GN+     +G+ +V+L+  NG+ L LKNV+++P IR +LISTGK
Sbjct: 189 DFFTSYTSGDFGSVRMGNDDSAKAIGMRNVRLETSNGTMLTLKNVKHIPDIRMNLISTGK 248

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTL 11
           LDD G+  +F ++  ++++GSM +A G KS +LY +
Sbjct: 249 LDDEGFYNIFRDSQWKLTRGSMVIAKGNKSSSLYLM 284


>tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030853 PE=4 SV=1
          Length = 1017

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = -3

Query: 295 EWFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           ++FTSY  +    VR+GN+ +   +G+GDV+L+  NG+ L LKNV+++P IR +LIST K
Sbjct: 60  DFFTSYTFSDFGSVRMGNDGLAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTRK 119

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTLHV 5
           LDD G    F ++  ++++GSM +    KS +LY + V
Sbjct: 120 LDDEGLCNTFRDSQWKLTRGSMVITKENKSSSLYLMQV 157


>tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029099 PE=4 SV=1
          Length = 649

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
 Frame = -3

Query: 295 EWFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGK 119
           ++FTSY +     VR+GN+     +G+GDV L+  NG  L LKNV+++P I  +LISTGK
Sbjct: 262 DFFTSYTSGDFGSVRMGNDGSAKAIGMGDVHLETSNGIVLILKNVKHIPDISMNLISTGK 321

Query: 118 LDDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTLHVS 2
           LD+ G+   F ++  ++++GSM +A G+K  +LY +  S
Sbjct: 322 LDNEGFCNTFRDSQWKLTRGSMVIAKGKKCSSLYFMQES 360


>tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018181 PE=4 SV=1
          Length = 1069

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 35/81 (43%), Positives = 55/81 (67%)
 Frame = -3

Query: 259 VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGKLDDAGYVTVFGNN 80
           V L N    D++G+GDVQ+   NGS   L+ VR++P +R++LIS G+LDD G+  +F   
Sbjct: 314 VYLANNSTLDVVGLGDVQISLXNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGG 373

Query: 79  A*RISKGSMTVAHGRKSGTLY 17
             +++KG+  +A G+K+GTLY
Sbjct: 374 TWKVTKGARVLARGKKTGTLY 394


>tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024659 PE=4 SV=1
          Length = 1287

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 34/81 (41%), Positives = 56/81 (69%)
 Frame = -3

Query: 259 VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGKLDDAGYVTVFGNN 80
           V L +    D++G+GDV++   NGS   L+ VR++P +R++LIS G+LDD G+  +F   
Sbjct: 314 VYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGG 373

Query: 79  A*RISKGSMTVAHGRKSGTLY 17
             +++KG+  +AHG+K+GTLY
Sbjct: 374 TWKVTKGARVLAHGKKTGTLY 394


>tr|A5BEP3|A5BEP3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004522 PE=4 SV=1
          Length = 882

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 40/95 (42%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
 Frame = -3

Query: 292 WFTSYVATK-D*VRLGNEQVCDILGVGDVQLKFQNGSSLWLKNVRYVPAIRKSLISTGKL 116
           +FTSY +     VR+GN+ +   +G+ DV+L+  NG+ L LKNV+++P IR +LIS GKL
Sbjct: 176 FFTSYTSDDFGSVRMGNDDLAKAIGMRDVRLETSNGTMLILKNVKHIPDIRMNLISIGKL 235

Query: 115 DDAGYVTVFGNNA*RISKGSMTVAHGRKSGTLYTL 11
           DD G    F ++  ++++GSM VA  +K  +LY +
Sbjct: 236 DDEGLYNTFLDSQWKLTRGSMVVAKRKKYSSLYLM 270