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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915580
Clone id YMU001_000073_C08
Library
Length 407
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTTCTTGATGTTGGTCTCCATATCTTTCCGATCCCTTGGGGATCCTTGTCGTATGGTT
TTTGTCGACTTTGGCTTCAGCGGAGCTCCGTTTGGCAATTTGTCACTCTAGAAGCACCCG
TGGTTGCGTTTACATGTCTTTGATGACTTGTGGTAGTCTACCACCATAGGACTTGGTTGT
TGATGGTCTAGGAAAGCCGCTCGTGAAGTTTGGTGTCAAACGGACATGCAGTTTGGCCGT
GAGAGCTATTTGACGCTTTGTGTGTCTGTTGTCGTTTCTGAAGTTTAGTGCCGCTTCGGG
TCACTTTTTGGTCATGTGGGCTACATAGAATTTTCGAGCATGTCGAGATGCTCCTACCCA
TGAATTTTGGTAGCATTTGGGCGTATCCCCGCCGATTTCCCATTTGG
■■Homology search results ■■ -
sp_hit_id Q73YK2
Definition sp|Q73YK2|AMPA_MYCPA Probable cytosol aminopeptidase OS=Mycobacterium paratuberculosis
Align length 67
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915580|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_C08.
         (407 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q73YK2|AMPA_MYCPA Probable cytosol aminopeptidase OS=Mycobact...    32   0.97 
sp|P87035|GPA4_USTMA Guanine nucleotide-binding protein alpha-4 ...    30   4.8  
sp|Q83IQ8|MDTO_SHIFL Multidrug resistance protein mdtO OS=Shigel...    29   6.3  
sp|P32715|MDTO_ECOLI Multidrug resistance protein mdtO OS=Escher...    29   6.3  
sp|Q8X5R8|MDTO_ECO57 Multidrug resistance protein mdtO OS=Escher...    29   6.3  
sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain ...    29   8.2  
sp|P50536|MSL3_DROME Protein male-specific lethal-3 OS=Drosophil...    29   8.2  

>sp|Q73YK2|AMPA_MYCPA Probable cytosol aminopeptidase
           OS=Mycobacterium paratuberculosis GN=pepA PE=3 SV=1
          Length = 515

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +2

Query: 59  FLSTLASAELRLAICHSRSTRGCVYMSLMTCGSLPP*DLVVDGLGKPLVKF---GVKRTC 229
           FLS+ A AE+   +    +T G   +  +  GSLP   ++  GLGKP  ++    V+R  
Sbjct: 51  FLSSDAVAEIESGLRALAATGGAEQLHRLVVGSLPVSSVLTVGLGKPRSEWPADTVRRAA 110

Query: 230 SLAVRAI 250
            +A R++
Sbjct: 111 GVAARSL 117


>sp|P87035|GPA4_USTMA Guanine nucleotide-binding protein alpha-4
           subunit OS=Ustilago maydis GN=GPA4 PE=3 SV=1
          Length = 580

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 394 RRGYAQMLPKFMGRSISTCSKILCSPHDQKVTRSGTKLQKRQQTHKASNSSHGQTACP 221
           RRG+ +++   +  S+    + L   HDQ++ R  ++L + + +  AS S+    + P
Sbjct: 127 RRGWTKIVLLNLTSSVRVLLETLSLYHDQRLERKSSELSRLESSTSASTSTSASASSP 184


>sp|Q83IQ8|MDTO_SHIFL Multidrug resistance protein mdtO OS=Shigella
           flexneri GN=mdtO PE=3 SV=5
          Length = 680

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 382 AQMLPKFMGRSISTCSKILCSPHDQKVTRSGTKLQKRQQTHKASNS 245
           A+ LP+ +  ++   SK++  P  Q+VT   T LQ R   H A N+
Sbjct: 503 ARTLPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNA 548


>sp|P32715|MDTO_ECOLI Multidrug resistance protein mdtO
           OS=Escherichia coli (strain K12) GN=mdtO PE=3 SV=2
          Length = 683

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 382 AQMLPKFMGRSISTCSKILCSPHDQKVTRSGTKLQKRQQTHKASNS 245
           A+ LP+ +  ++   SK++  P  Q+VT   T LQ R   H A N+
Sbjct: 506 ARTLPQKLAGTLGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNA 551


>sp|Q8X5R8|MDTO_ECO57 Multidrug resistance protein mdtO
           OS=Escherichia coli O157:H7 GN=mdtO PE=3 SV=2
          Length = 683

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 382 AQMLPKFMGRSISTCSKILCSPHDQKVTRSGTKLQKRQQTHKASNS 245
           A+ LP+ +  ++   SK++  P  Q+VT   T LQ R   H A N+
Sbjct: 506 ARTLPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNA 551


>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain
           OS=Mus musculus GN=Pogk PE=2 SV=2
          Length = 607

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 210 NFTSGFPRPSTTKSYGGRLPQVIKDM 133
           N TS FP+P    S+G RLPQ I ++
Sbjct: 136 NATSHFPQPQPFNSFGLRLPQDITEL 161


>sp|P50536|MSL3_DROME Protein male-specific lethal-3 OS=Drosophila
           melanogaster GN=msl-3 PE=1 SV=2
          Length = 512

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 273 DNRHTKRQIALTAKLHVRLTPNFTSGFPRPSTTKSYGGRLPQV 145
           +NR  +R++A  AKL +R   ++     +PS  K  GG+   V
Sbjct: 78  ENRQLQRELAEAAKLQIRGDYSYKGTPDKPSAKKKRGGKAAHV 120
tr_hit_id B4BNB2
Definition tr|B4BNB2|B4BNB2_9BACI Putative uncharacterized protein OS=Geobacillus sp. G11MC16
Align length 60
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915580|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_C08.
         (407 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4BNB2|B4BNB2_9BACI Putative uncharacterized protein OS=Geoba...    36   1.1  
tr|Q55EY5|Q55EY5_DICDI Putative uncharacterized protein OS=Dicty...    35   1.4  
tr|A4ISW1|A4ISW1_GEOTN Putative uncharacterized protein OS=Geoba...    35   1.9  
tr|B2B839|B2B839_PODAN Predicted CDS Pa_2_13210 OS=Podospora ans...    35   1.9  

>tr|B4BNB2|B4BNB2_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. G11MC16 GN=G11MC16DRAFT_1865 PE=4
           SV=1
          Length = 1143

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 387 DTPKCYQNSWVGA-SRHARKFYVAHMTKK*PEAALNFRNDNRHTKRQIALTAKLHVRLTP 211
           D  + +  +W  + S  +++F V  +TKK  +AAL+F+N  R   RQ+   A+L    +P
Sbjct: 755 DVDRLFDGAWQASLSLESKQFLVQTVTKKMAQAALDFKNVKRDVMRQLETVAQLTENKSP 814


>tr|Q55EY5|Q55EY5_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0189968 PE=4 SV=1
          Length = 951

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 182 QQPSPMV-VDYHKSSKTCKRNHGCF*SDKLPNGAPLKPKSTKTIRQGSPRDRKDMET 15
           QQP P V V+  KSSK+ K+N       K P  +P KPK TKT  + +P+  K   T
Sbjct: 402 QQPQPHVKVEKSKSSKSNKKN-------KTPTSSP-KPKKTKTKAKANPKSSKKTTT 450


>tr|A4ISW1|A4ISW1_GEOTN Putative uncharacterized protein
           OS=Geobacillus thermodenitrificans (strain NG80-2)
           GN=GTNG_3070 PE=4 SV=1
          Length = 961

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 387 DTPKCYQNSWVGA-SRHARKFYVAHMTKK*PEAALNFRNDNRHTKRQIALTAKLHVRLTP 211
           D    +  +W  + S  +++F V  +TKK  +AAL+F+N  R   RQ+   A+L    +P
Sbjct: 573 DVDSLFDGAWQASLSLESKQFLVQTVTKKMAQAALDFKNVKRDAMRQLETVAQLTENKSP 632


>tr|B2B839|B2B839_PODAN Predicted CDS Pa_2_13210 OS=Podospora
           anserina PE=4 SV=1
          Length = 1113

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
 Frame = -2

Query: 382 AQMLPKFMGRSISTCSKI----LC-SPHDQKVTRSGTKLQKRQ--QTHKASNSSHGQTAC 224
           A+ L  F GR + T + +    +C  P+D   T+    L +R+  +T KAS+ S G+T  
Sbjct: 219 ARYLRPFAGRGLQTLNVLREDAVCPGPNDDDPTQEHDPLSRREREETPKASSHSQGKTPK 278

Query: 223 PFDTKLHERLS*TINN 176
           P D   +++L+ T+ +
Sbjct: 279 PDDNSAYQKLTETVES 294