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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915586
Clone id YMU001_000073_D03
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTCGCGGCCGCGAATATTCGCTTCTCAAAAACATCTTGGAGTTCAACTCCACGGCTCTT
CTCACTATGTAATGCAGCCAATGTTGCTTGAAGTTCCTCTAATTGGGCAGTCAAAAACTG
TTTCTCCTCAGACAGTGCTGAAAGCTCATCAGTTAGTCTCACTTGCATAGAGTTGGACTT
CTCCTGTAGCTCTGACAAGCTGAGCTCGGACTTGCTCAACAGCTCACCTACTTCAGCCTT
CTCCCGTTCTGCTAGATCCAGTGCTGCTTGAACTTGCTGAAGCTGCTGCTCATAATCCAT
CAACCTCTTTTCTAAAACATCTTGGAGTTCCAGACTTCTACCCCTTTCACCTTGCAAAGC
TTCCAATGCAGCTTCAAGCTCCTCAATTCGCGTTTGCAGCATCTGCTTCTCCTGAGCCTG
TGCGGAAATCTCACCATTCAAACTTTCTT
■■Homology search results ■■ -
sp_hit_id P12916
Definition sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B
Align length 44
Score (bit) 29.6
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915586|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_D03.
         (432 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B P...    30   5.5  
sp|Q9DC22|IQWD1_MOUSE Nuclear receptor interaction protein OS=Mu...    30   5.6  
sp|Q9ULL0|K1210_HUMAN Uncharacterized protein KIAA1210 OS=Homo s...    29   7.3  
sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropic...    29   7.3  
sp|O43610|SPY3_HUMAN Protein sprouty homolog 3 OS=Homo sapiens G...    29   9.6  
sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laev...    29   9.6  
sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laev...    29   9.6  

>sp|P12916|POLG_HRV1B Genome polyprotein OS=Human rhinovirus 1B PE=1
           SV=3
          Length = 2157

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 285 NLFSKTSWSSRLLPLSPCKASNAASSSSIRVCSICFS*ACAEIS 416
           ++    +WS  ++P+SP ++    +SS+IR  ++  S  CAE S
Sbjct: 282 SMLRHNNWSLVIIPISPLRSE--TTSSNIRPITVSISPMCAEFS 323


>sp|Q9DC22|IQWD1_MOUSE Nuclear receptor interaction protein OS=Mus
           musculus GN=Iqwd1 PE=2 SV=1
          Length = 876

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 AHLLQPSPVLLDPVLLELAEAAAHNPSTSFLKHLGVPDFYP 327
           A LLQPS    DPV  + A AA  +P +S L  L  PD  P
Sbjct: 405 AALLQPSTSSTDPVQAQAATAAIESPRSSSL--LSCPDSEP 443


>sp|Q9ULL0|K1210_HUMAN Uncharacterized protein KIAA1210 OS=Homo
           sapiens GN=KIAA1210 PE=2 SV=2
          Length = 1093

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +1

Query: 139 VSLA*SWTSPVALTS*ARTCSTAHLLQPSPVLLDPVLLELAEAAAHNPSTSFLKHLGVPD 318
           +S +  W+SPVA T    T         SP  + P   EL + +AH  ST+  + +    
Sbjct: 451 MSTSAEWSSPVAPTPSKYT---------SPPWVTPKFEELYQLSAHPESTTVEEDISKEQ 501

Query: 319 FYPFHLAKL 345
             P HL++L
Sbjct: 502 LLPRHLSQL 510


>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus
           tropicalis GN=fam62c PE=2 SV=1
          Length = 889

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 22  GVQLHGSSHYVMQPMLLEVPLIG 90
           GVQLHG+   ++ P+L ++P +G
Sbjct: 256 GVQLHGTLRVILAPLLPDLPFVG 278


>sp|O43610|SPY3_HUMAN Protein sprouty homolog 3 OS=Homo sapiens
           GN=SPRY3 PE=1 SV=2
          Length = 288

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +1

Query: 34  HGSSHYVMQPMLLEVPLIGQSKTVSPQTVLKAHQLVSLA*SWTSPVALTS*ARTCSTAHL 213
           H S+ YV +P     P   +    SP  +++ H+       W+     TS  R+ S  H 
Sbjct: 22  HASNDYVERP-----PAPCKQALSSPSLIVQTHKS-----DWSLATMPTSLPRSLSQCHQ 71

Query: 214 LQPSPVLLDPVLLELAEAAAHNPSTS 291
           LQP P  L      +A + +H+ + S
Sbjct: 72  LQPLPQHLSQ--SSIASSMSHSTTAS 95


>sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis
           GN=fam62b-B PE=2 SV=1
          Length = 876

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +1

Query: 25  VQLHGSSHYVMQPMLLEVPLIG 90
           +QLHG+   +++P++ +VP++G
Sbjct: 226 IQLHGTMRVILEPLIGDVPIVG 247


>sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis
           GN=fam62b-A PE=2 SV=1
          Length = 872

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +1

Query: 25  VQLHGSSHYVMQPMLLEVPLIG 90
           +QLHG+   +++P++ +VP++G
Sbjct: 222 IQLHGTMRVILEPLIGDVPIVG 243
tr_hit_id Q5GRD0
Definition tr|Q5GRD0|Q5GRD0_ALCXX Putative LysR-type transcriptional regulator OS=Alcaligenes xylosoxydans xylosoxydans
Align length 106
Score (bit) 40.4
E-value 0.045
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915586|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_D03.
         (432 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5GRD0|Q5GRD0_ALCXX Putative LysR-type transcriptional regula...    40   0.045
tr|Q2HD20|Q2HD20_CHAGB Putative uncharacterized protein OS=Chaet...    34   4.2  
tr|A4SW07|A4SW07_POLSQ Heavy metal translocating P-type ATPase O...    33   5.4  
tr|A9NL53|A9NL53_PICSI Putative uncharacterized protein OS=Picea...    33   5.5  
tr|Q9A7L1|Q9A7L1_CAUCR DnaA-related protein OS=Caulobacter cresc...    33   9.3  
tr|B8GW56|B8GW56_CAUCR DnaA-related protein OS=Caulobacter cresc...    33   9.3  
tr|A9NJR7|A9NJR7_PICSI Putative uncharacterized protein OS=Picea...    33   9.3  

>tr|Q5GRD0|Q5GRD0_ALCXX Putative LysR-type transcriptional regulator
           OS=Alcaligenes xylosoxydans xylosoxydans PE=4 SV=1
          Length = 302

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
 Frame = +1

Query: 1   FASQKHLGVQLHGSSHYVMQPMLLEVPLIGQSKTVSPQTVLKAHQLVSLA*SWTSPVALT 180
           F +Q HL V+  GS H V++  L+E       K   PQ +   H +VS    W +P  L 
Sbjct: 187 FRAQNHLLVEYSGSGHLVIERALVEAGARNNIKLRLPQYLSAPHFIVSSDLVWCAPAVL- 245

Query: 181 S*ARTCSTAH--LLQPSPVLLDP--VLLELAEAAAHNPSTSFLKHL 306
             A T S  +  +++P P+ L P  + L   +    +P+  +L+ L
Sbjct: 246 --AETLSNHYDLVIKPVPLSLPPFEIALYWHDRFHRDPANQWLREL 289


>tr|Q2HD20|Q2HD20_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_01884 PE=4 SV=1
          Length = 192

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 163 SPVALTS*ARTCSTAHLLQPSPVLLDPVLLELAEAAAHNPSTSFLKHLGVPDFYPFHLAK 342
           +P+ +TS A  C T HL  P+   + P  L++      +P+T + KH    D+   H A+
Sbjct: 69  NPIPMTSAAHLCCTHHLSDPA---VQPGKLDVVLVPGPDPATDWTKHPEATDWLAAHAAR 125


>tr|A4SW07|A4SW07_POLSQ Heavy metal translocating P-type ATPase
           OS=Polynucleobacter sp. (strain QLW-P1DMWA-1)
           GN=Pnuc_0451 PE=3 SV=1
          Length = 811

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = +1

Query: 10  QKHLGVQLHGSSHYVMQPMLLEVPLIGQSKTVS------PQTVLKAHQLVSLA*SWTS 165
           +K +G +++  +H ++ P+L+ +  +GQS  ++       Q +L    +VSLA  W +
Sbjct: 384 EKKIGDRVYAGTHNILNPLLMRIDAVGQSTRIAGIASLLDQALLAKPVMVSLAEKWAA 441


>tr|A9NL53|A9NL53_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 37

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 306 WSSRLLPLSPCKASNAASSSSIRVCSI 386
           W++  LPL PC  S+A+SS  IR+C +
Sbjct: 3   WAAMSLPLKPCLGSSASSSRPIRLCML 29


>tr|Q9A7L1|Q9A7L1_CAUCR DnaA-related protein OS=Caulobacter
           crescentus GN=CC_1711 PE=4 SV=1
          Length = 230

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 154 SWTSPVA-LTS*ARTCSTAHLLQPSPVLLDPVLLELAEAAAHNPSTSFLKHLGVPDFYPF 330
           +W++ VA L S     S A + +P   +L+ VL     AA   P          PD YP+
Sbjct: 133 TWSAEVADLRSRLNALSVAEIAEPDDAVLEAVLRRAFAAAWWKPE---------PDLYPY 183

Query: 331 HLAKLP 348
            LA+LP
Sbjct: 184 LLARLP 189


>tr|B8GW56|B8GW56_CAUCR DnaA-related protein OS=Caulobacter
           crescentus NA1000 GN=CCNA_01783 PE=4 SV=1
          Length = 230

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 154 SWTSPVA-LTS*ARTCSTAHLLQPSPVLLDPVLLELAEAAAHNPSTSFLKHLGVPDFYPF 330
           +W++ VA L S     S A + +P   +L+ VL     AA   P          PD YP+
Sbjct: 133 TWSAEVADLRSRLNALSVAEIAEPDDAVLEAVLRRAFAAAWWKPE---------PDLYPY 183

Query: 331 HLAKLP 348
            LA+LP
Sbjct: 184 LLARLP 189


>tr|A9NJR7|A9NJR7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 37

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 306 WSSRLLPLSPCKASNAASSSSIRVCSI 386
           W++  LPL PC  S+A+SS  IR C +
Sbjct: 3   WAAMSLPLKPCLGSSASSSRPIRFCML 29