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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915588
Clone id YMU001_000073_D05
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGGATTGTCTGAAGGCTCTAGGAGACGACATCAGGCGTGTAGGATCGGTGAGTTGCAA
GATGGAGTGAAAGGGACAAGGTTCAGAAATTATGCTCTTGATTATGCTTCATCTTTGACG
TCCCAGGGTTGGAATCTGTTTCGAAAATTAATTTGGCATTTTCGTGATTTGCCTTGCCAT
ATATATCCAGCTGACCAAGTTACTGCAGATGCCATTCAATCGAATGGTGGCATTCGGGAT
ATAGTGTATTGTATGCTTTATTAGCCCTACAATGACGTCTAGAGCTTGCCTTTCTACCAA
AGTCTTTGGTCGTAAAGGCGGTTAGGTACACAAAATCGACAAAACGTTTTCTGTGCACAT
GTGGGAGAGAGAGAGTCGTGATGGCTCTTAATGTATTGTATGCTTATATGGCCATAAATC
TGCATTATCCTAGATTCATCTAGGTATATATTTTAGTTGTATATAGTACACATGCAGACT
TCACATTGTGAAGTATTCATCCCGAGTTATGACGAGTTGATATTGTGC
■■Homology search results ■■ -
sp_hit_id Q5HVI4
Definition sp|Q5HVI4|DNLJ_CAMJR DNA ligase OS=Campylobacter jejuni (strain RM1221)
Align length 53
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915588|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_D05.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5HVI4|DNLJ_CAMJR DNA ligase OS=Campylobacter jejuni (strain ...    33   1.1  
sp|A1VYU6|DNLJ_CAMJJ DNA ligase OS=Campylobacter jejuni subsp. j...    33   1.1  
sp|Q0PAT1|DNLJ_CAMJE DNA ligase OS=Campylobacter jejuni GN=ligA ...    33   1.1  
sp|A7H3U4|DNLJ_CAMJD DNA ligase OS=Campylobacter jejuni subsp. d...    33   1.1  
sp|A8FL10|DNLJ_CAMJ8 DNA ligase OS=Campylobacter jejuni subsp. j...    33   1.1  

>sp|Q5HVI4|DNLJ_CAMJR DNA ligase OS=Campylobacter jejuni (strain
           RM1221) GN=ligA PE=3 SV=1
          Length = 647

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 303 TLVERQALDVIVGLIKHTIHYIPNATIRLNGICSNLVSWIYMARQITKMPN*F 145
           TL++ Q +D    L+   IH++    + ++G+  N+V  +Y  ++IT + + F
Sbjct: 407 TLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIF 459


>sp|A1VYU6|DNLJ_CAMJJ DNA ligase OS=Campylobacter jejuni subsp.
           jejuni serotype O:23/36 (strain 81-176) GN=ligA PE=3
           SV=1
          Length = 647

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 303 TLVERQALDVIVGLIKHTIHYIPNATIRLNGICSNLVSWIYMARQITKMPN*F 145
           TL++ Q +D    L+   IH++    + ++G+  N+V  +Y  ++IT + + F
Sbjct: 407 TLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIF 459


>sp|Q0PAT1|DNLJ_CAMJE DNA ligase OS=Campylobacter jejuni GN=ligA
           PE=3 SV=1
          Length = 647

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 303 TLVERQALDVIVGLIKHTIHYIPNATIRLNGICSNLVSWIYMARQITKMPN*F 145
           TL++ Q +D    L+   IH++    + ++G+  N+V  +Y  ++IT + + F
Sbjct: 407 TLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIF 459


>sp|A7H3U4|DNLJ_CAMJD DNA ligase OS=Campylobacter jejuni subsp.
           doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ligA
           PE=3 SV=1
          Length = 647

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 303 TLVERQALDVIVGLIKHTIHYIPNATIRLNGICSNLVSWIYMARQITKMPN*F 145
           TL++ Q +D    L+   IH++    + ++G+  N+V  +Y  ++IT + + F
Sbjct: 407 TLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIF 459


>sp|A8FL10|DNLJ_CAMJ8 DNA ligase OS=Campylobacter jejuni subsp.
           jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ligA
           PE=3 SV=1
          Length = 647

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 303 TLVERQALDVIVGLIKHTIHYIPNATIRLNGICSNLVSWIYMARQITKMPN*F 145
           TL++ Q +D    L+   IH++    + ++G+  N+V  +Y  ++IT + + F
Sbjct: 407 TLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIF 459
tr_hit_id Q4RNP9
Definition tr|Q4RNP9|Q4RNP9_TETNG Chromosome 2 SCAF15010, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 62
Score (bit) 35.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915588|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_D05.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RNP9|Q4RNP9_TETNG Chromosome 2 SCAF15010, whole genome shot...    35   2.4  
tr|A8PWX8|A8PWX8_MALGO Putative uncharacterized protein OS=Malas...    34   5.2  

>tr|Q4RNP9|Q4RNP9_TETNG Chromosome 2 SCAF15010, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00031461001
           PE=3 SV=1
          Length = 546

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 67  VKGTRFRNYALDYASSLTSQGWNLFRKLIWHFRDLPCHIYPADQVT-ADAIQSNGGIRDI 243
           V+   FR+Y LD+                WH+R      YPAD++   D +QS+GG  D+
Sbjct: 54  VREVAFRDYGLDHPK--------------WHYRGNYASYYPADELMHRDLLQSSGGRADV 99

Query: 244 VY 249
           ++
Sbjct: 100 IF 101


>tr|A8PWX8|A8PWX8_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_1254 PE=4 SV=1
          Length = 316

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 286 SSRRHCRANKAYNTLYPECHHSIEWHLQ*LGQLDIYGKANHENAKLIFETDSN-----PG 122
           +S RH       +T Y +   SI+ H+   G+ +++ K  HENAK  +ETD +     PG
Sbjct: 9   NSFRHAPEQYTADTSYAD---SIDTHMA--GKPEVFEKEKHENAKQFYETDDHSVMAMPG 63

Query: 121 TSKMK 107
            S +K
Sbjct: 64  KSALK 68