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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915605
Clone id YMU001_000073_E10
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCTCGAGTTAGTGGTGGTGGTGGTGGTGGCTCATGTGCTGGACGAGGGGTCGTAACAGT
AGCAGCTGCAATGGCTATTGGATTCTGGTTTAACCATGGCATCAGAGAGTTGCCTAATTG
TGCATGTGTTGCTGCAAGGCTTGCTAAGTCAGGGGCATCCTCCTGCTTTTGTGATTGACA
TGTACTTTTCAAAACTGTATTCAGTAATAATGCAGCATTTGGGAAAGCTGCCAAAGAATG
CATGGGGTGAAAGTAAGGCAGAGCCATATGAGGCCCATACATTCCAAATGGTAAAATATT
GTTGTGGCATGGCATTGAAGAATTTGGTTGATTTGCTGCTACCTTTTGCGCTGAGTTAAG
CTCTGATTCGGCACAAGTTGTCCTGGACAGCTTTGTTGTTTCTTGCGACTCATTCCGAAA
GGAATCGCTCTCAACTTCTTCAGTGCCTTGTTTATGAGGCTGTTGACAAAATCCTGGCGA
CAGTATCTTCTCTGAAACAGTGCATAACGGATGC
■■Homology search results ■■ -
sp_hit_id Q01217
Definition sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial OS=Saccharomyces cerevisiae
Align length 57
Score (bit) 31.6
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915605|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_E10.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial OS=Saccharom...    32   2.3  
sp|P17177|CP27A_RABIT Cytochrome P450 27, mitochondrial OS=Oryct...    31   3.0  
sp|Q54KG3|FFR_DICDI Protein fat-free homolog OS=Dictyostelium di...    30   5.0  
sp|Q8NB78|AOF1_HUMAN Flavin-containing amine oxidase domain-cont...    30   5.1  
sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 O...    30   6.5  
sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4...    30   8.5  
sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4...    30   8.5  
sp|Q91PP5|POLG_RTSVT Genome polyprotein OS=Rice tungro spherical...    30   8.7  
sp|Q83034|POLG_RTSVA Genome polyprotein OS=Rice tungro spherical...    30   8.7  
sp|Q6DE84|MAFB_XENLA Transcription factor MafB OS=Xenopus laevis...    30   8.7  

>sp|Q01217|ARG56_YEAST Protein ARG5,6, mitochondrial
           OS=Saccharomyces cerevisiae GN=ARG5,6 PE=1 SV=1
          Length = 863

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 272 GPYIPNGKILLWHGIEEFG*FAATFCAELSSDSAQVVLDSFVVSCDSFRKESLSTSS 442
           G Y+  GK+L W+GI++              ++   ++++FV SCD+    + S SS
Sbjct: 470 GSYLKGGKVLFWYGIDDI-------------NTISELVENFVKSCDTASTLNSSASS 513


>sp|P17177|CP27A_RABIT Cytochrome P450 27, mitochondrial
           OS=Oryctolagus cuniculus GN=CYP27A1 PE=2 SV=1
          Length = 535

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 350 AELSSDSAQVVLDSFVVSCDSFRKESLSTSSVP 448
           A L +D+   V+DSFVV  D  R ES S   VP
Sbjct: 174 AALYTDALNEVIDSFVVRLDQLRAESASGDQVP 206


>sp|Q54KG3|FFR_DICDI Protein fat-free homolog OS=Dictyostelium
           discoideum GN=ffr PE=3 SV=1
          Length = 917

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 174 IDMYFSKLYSVIMQHLGKLPKNAWGESKAEPYEAHTFQMVKYCCGMALKNLVDLLLPFA 350
           ID YF  L   I +H+ +L  +   E + E  E H  Q +      A+ N  D++L FA
Sbjct: 520 IDFYFDNLQKTIKEHIHQL-NSTLNERRDEVLEGHNLQELSDATSKAIVN--DIILLFA 575


>sp|Q8NB78|AOF1_HUMAN Flavin-containing amine oxidase
           domain-containing protein 1 OS=Homo sapiens GN=AOF1 PE=1
           SV=2
          Length = 823

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = -1

Query: 295 FTIWN-VWASYGSALLSPHAFFGS--FPKCCIITEYSFEKYMSITKAGGCP*LSKPCSNT 125
           +T W  +W S G    SP AF      P     T+    K+  +TK      L+   + T
Sbjct: 110 YTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQ---LTPQIAKT 166

Query: 124 CTIRQLSDAMVKPESNSHCS 65
                  +  +KPE++ HCS
Sbjct: 167 YRCGMKPNTAIKPETSDHCS 186


>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4
           OS=Rattus norvegicus GN=Herc4 PE=2 SV=1
          Length = 1057

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 270 EAHTFQMVKYCCGMALKN--LVDLLLPFALS*ALIRHKLSWTALLFLATHSERNRSQLL 440
           ++  F ++   CG+A+ N  +VDL  P AL   L++ K S   L  L     R+  QLL
Sbjct: 791 DSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPDVGRSMQQLL 849


>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4
           OS=Mus musculus GN=Herc4 PE=2 SV=2
          Length = 1057

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 270 EAHTFQMVKYCCGMALKN--LVDLLLPFALS*ALIRHKLSWTALLFLATHSERNRSQLL 440
           ++  F ++   CG+A+ N  +VDL  P AL   L++ K S   L  L     R+  QLL
Sbjct: 791 DSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPAVGRSMQQLL 849


>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4
           OS=Homo sapiens GN=HERC4 PE=1 SV=1
          Length = 1057

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 270 EAHTFQMVKYCCGMALKN--LVDLLLPFALS*ALIRHKLSWTALLFLATHSERNRSQLL 440
           ++  F ++   CG+A+ N  +VDL  P AL   L++ K S   L  L     R+  QLL
Sbjct: 791 DSDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLLKKKPSLDDLKELMPDVGRSMQQLL 849


>sp|Q91PP5|POLG_RTSVT Genome polyprotein OS=Rice tungro spherical
            virus (strain Vt6) PE=1 SV=1
          Length = 3471

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 328  TKFFNAMPQQYFTIWNVWASYGSALLSPHAFFGSFPKCCIITEYSFEKYMSI 173
            T  FN+    YF      ++ GS+LLSP      F   C I  Y  +  +S+
Sbjct: 3224 TVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVSV 3275


>sp|Q83034|POLG_RTSVA Genome polyprotein OS=Rice tungro spherical
            virus (strain A) PE=1 SV=1
          Length = 3473

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 328  TKFFNAMPQQYFTIWNVWASYGSALLSPHAFFGSFPKCCIITEYSFEKYMSI 173
            T  FN+    YF      ++ GS+LLSP      F   C I  Y  +  +S+
Sbjct: 3227 TVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVSV 3278


>sp|Q6DE84|MAFB_XENLA Transcription factor MafB OS=Xenopus laevis
           GN=mafb PE=2 SV=1
          Length = 313

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
 Frame = -2

Query: 480 SPGFCQQPHKQGTEEV---ESDSFRNESQETTKLSRTTCAESELNSAQKVAANQPNSSMP 310
           SP F    HK   +++    S S+++ S E   L+     E+ +   Q     Q   S  
Sbjct: 71  SPSFSPTEHKTHLDDLYWMSSSSYQHVSPEALNLTPEDAVEALIGQHQMPPQLQGYESFR 130

Query: 309 CH------NNILPFGMYGPHMALPYFHPMH 238
            H      N     G++   M LP+ HP H
Sbjct: 131 AHHHHHHQNQHQYQGVHHEEMGLPHHHPHH 160
tr_hit_id A8P884
Definition tr|A8P884|A8P884_BRUMA Putative uncharacterized protein OS=Brugia malayi
Align length 78
Score (bit) 36.2
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915605|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_E10.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8P884|A8P884_BRUMA Putative uncharacterized protein OS=Brugi...    36   0.96 
tr|A9TWQ4|A9TWQ4_PHYPA Predicted protein OS=Physcomitrella paten...    33   6.4  
tr|Q3LA05|Q3LA05_RHOE4 Putative uncharacterized protein OS=Rhodo...    33   8.3  

>tr|A8P884|A8P884_BRUMA Putative uncharacterized protein OS=Brugia
            malayi GN=Bm1_18835 PE=4 SV=1
          Length = 991

 Score = 36.2 bits (82), Expect = 0.96
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = +3

Query: 303  CGMALKNLVDLLLPFALS*ALIRHKLSWTALLFLATHSERNRSQLLQCLV--------YE 458
            C M+L NL  + +   +  A++  K  W   L L +H E   S L  CL+         +
Sbjct: 798  CLMSLSNLNSVQVDTLVHLAVVLQKRDWAMQLLLGSHDEYRTSALRACLLASDVSSEGAQ 857

Query: 459  AVDKILATVSSLKQCITD 512
            ++ K++AT     +C+TD
Sbjct: 858  SIIKLVATNLIANECMTD 875


>tr|A9TWQ4|A9TWQ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172407 PE=4 SV=1
          Length = 1155

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
 Frame = -2

Query: 438 EVESDSFRNESQETTKLSRTT-CAESELNSAQKVAANQP-----NSSMPCHNNILPFGMY 277
           E   D+ R + +ET KL      AE EL SA+    NQ       SS P H     F   
Sbjct: 342 EAAEDTIRTQVEETEKLRNALRVAEMELQSAKIEEQNQGLNEGYRSSQPFHGRNRSFQGQ 401

Query: 276 GPHMALPYFHPMHSXXXXXXXXXXXNTVLKS 184
              + L + HPMH             T+ KS
Sbjct: 402 PGSVRLAFQHPMHQNGDNYGELRNGQTLKKS 432


>tr|Q3LA05|Q3LA05_RHOE4 Putative uncharacterized protein
           OS=Rhodococcus erythropolis (strain PR4) GN=pREL1_0015
           PE=4 SV=1
          Length = 666

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -2

Query: 183 TCQSQKQEDAPDLASLAATHAQLGNSLMP------WLNQN 82
           T Q Q Q  +PDLAS++A  + + N+L+P      W+ QN
Sbjct: 283 TLQKQLQSGSPDLASVSAAASDIANTLVPVADTTKWVTQN 322