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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915610
Clone id YMU001_000073_F03
Library
Length 343
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGATGAGCTGGTATACAGAGATGGTGAGGGCTATTCTCTTACAGATCCACCTGGTTCAT
TGGATGCCATAGTCTATGCACCGAATGCAATTGCACAATGTCAAGGGCTAAGAGAATGTG
TGGAGAATAGTTTAAAAGCATGTACAGATGAAGGGAAGTTTCCAAGTGCGTAGTACATCA
ACGAGGAGGAAACCAGCGACATTTATATTGGTGAGCAAGCTTGATGATGGCAAATCATTC
TTCAAGGGCACATGCTTCAAGAAGAGTGGCAGCCAGCATCAACCTTGAGGAAATCCTACC
ATGGATCAAAATTGTTGGTTTTGTAGTCTCAAGAGGCAACTGC
■■Homology search results ■■ -
sp_hit_id A7EKL8
Definition sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine synthase 3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 30
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915610|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F03.
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine synthase 3 OS=Sclerotin...    31   1.7  
sp|A6RMI1|DUS3_BOTFB tRNA-dihydrouridine synthase 3 OS=Botryotin...    31   1.7  
sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine synthase 3 OS=Coccidioi...    31   2.2  
sp|Q5R6Y5|STRBP_PONAB Spermatid perinuclear RNA-binding protein ...    30   2.9  
sp|Q96SI9|STRBP_HUMAN Spermatid perinuclear RNA-binding protein ...    30   2.9  
sp|Q3V3Q7|PACS2_MOUSE Phosphofurin acidic cluster sorting protei...    30   2.9  
sp|Q86VP3|PACS2_HUMAN Phosphofurin acidic cluster sorting protei...    30   2.9  
sp|Q4A127|HSDR_STAS1 Type-1 restriction enzyme R protein OS=Stap...    30   3.7  
sp|Q5BF62|DUS3_EMENI tRNA-dihydrouridine synthase 3 OS=Emericell...    30   3.7  
sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine synthase 3 OS=Aspergill...    30   4.9  

>sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine synthase 3 OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dus3
           PE=3 SV=1
          Length = 750

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   ELVYRDGEGYSLTDPPGSLDAIVYAPNAIA 95
           ELVYR G G +L D P  L+ ++   NA++
Sbjct: 454 ELVYRQGAGSALLDAPSKLEKMIRGMNAVS 483


>sp|A6RMI1|DUS3_BOTFB tRNA-dihydrouridine synthase 3 OS=Botryotinia
           fuckeliana (strain B05.10) GN=dus3 PE=3 SV=1
          Length = 750

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   ELVYRDGEGYSLTDPPGSLDAIVYAPNAIA 95
           ELVYR G G +L D P  L+ ++   NA++
Sbjct: 454 ELVYRQGAGSALLDAPSKLEKMIRGMNAVS 483


>sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine synthase 3 OS=Coccidioides
           immitis GN=DUS3 PE=3 SV=1
          Length = 724

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 6   ELVYRDGEGYSLTDPPGSLDAIVYAPNAIA 95
           +LVYRDG G +L + P  L+ I+   NA++
Sbjct: 431 DLVYRDGAGSALLEHPSKLEKILRGMNAVS 460


>sp|Q5R6Y5|STRBP_PONAB Spermatid perinuclear RNA-binding protein
           OS=Pongo abelii GN=STRBP PE=2 SV=1
          Length = 672

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = +3

Query: 3   DELVYRDGEGYSLTDPPGSLD---------AIVYAPNAIAQCQGLRECV 122
           DEL  +DGE  S+ DPP  LD         ++ +A    A+  GL+ CV
Sbjct: 171 DELEKKDGENVSMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKSCV 219


>sp|Q96SI9|STRBP_HUMAN Spermatid perinuclear RNA-binding protein
           OS=Homo sapiens GN=STRBP PE=1 SV=1
          Length = 672

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = +3

Query: 3   DELVYRDGEGYSLTDPPGSLD---------AIVYAPNAIAQCQGLRECV 122
           DEL  +DGE  S+ DPP  LD         ++ +A    A+  GL+ CV
Sbjct: 171 DELEKKDGENVSMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKSCV 219


>sp|Q3V3Q7|PACS2_MOUSE Phosphofurin acidic cluster sorting protein 2
           OS=Mus musculus GN=Pacs2 PE=2 SV=1
          Length = 862

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 260 LKHVPLKND-LPSSSLLTNINV-AGFLLVDVLRTWKLPFICTC 138
           L H+ + +D LP + +L N +   G  L DVL+   LP +CTC
Sbjct: 448 LNHILISDDQLPENIILVNTSDWQGQFLSDVLQKHTLPVVCTC 490


>sp|Q86VP3|PACS2_HUMAN Phosphofurin acidic cluster sorting protein 2
           OS=Homo sapiens GN=PACS2 PE=1 SV=3
          Length = 889

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 260 LKHVPLKND-LPSSSLLTNINV-AGFLLVDVLRTWKLPFICTC 138
           L H+ + +D LP + +L N +   G  L DVL+   LP +CTC
Sbjct: 477 LNHILISDDQLPENIILVNTSDWQGQFLSDVLQRHTLPVVCTC 519


>sp|Q4A127|HSDR_STAS1 Type-1 restriction enzyme R protein
           OS=Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 / DSM 20229) GN=hsdR PE=3 SV=1
          Length = 930

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 168 HLETSLHLYMLLNYSPHILLALDIVQLHSVHRLWH 64
           H+   +  YM+LN + +IL+A+   Q+H+V  L H
Sbjct: 220 HIAKMISRYMILNETDNILMAMRPYQVHAVEALIH 254


>sp|Q5BF62|DUS3_EMENI tRNA-dihydrouridine synthase 3 OS=Emericella
           nidulans GN=dus3 PE=3 SV=1
          Length = 714

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 6   ELVYRDGEGYSLTDPPGSLDAIVYAPNAIAQ 98
           +L+YR+G G +L D P  L+ ++   NA+++
Sbjct: 421 DLLYREGSGSALLDAPSKLEKMLRGMNAVSE 451


>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine synthase 3 OS=Aspergillus
           clavatus GN=dus3 PE=3 SV=1
          Length = 728

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +3

Query: 12  VYRDGEGYSLTDPPGSLDAIVYAPNAIAQC--------QGLRECVENSLK 137
           VYRDG G +L D    L+ I+   NA+++          G R+   N+LK
Sbjct: 437 VYRDGAGSALLDHQSKLEKILRGMNAVSEAIPITVKIRTGTRDASPNALK 486
tr_hit_id Q4T031
Definition tr|Q4T031|Q4T031_TETNG Chromosome undetermined SCAF11373, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 56
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915610|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F03.
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4T031|Q4T031_TETNG Chromosome undetermined SCAF11373, whole ...    33   7.1  

>tr|Q4T031|Q4T031_TETNG Chromosome undetermined SCAF11373, whole
            genome shotgun sequence. (Fragment) OS=Tetraodon
            nigroviridis GN=GSTENG00009544001 PE=4 SV=1
          Length = 2172

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -2

Query: 168  HLETSLHLYMLLNYSPHILLALDIVQLHSVHRLWHPMNQVDL*ENSPHHLCIPAHL 1
            HL   LHL+ LL    H L  L  + LH +H L HP++         HHL  P HL
Sbjct: 1724 HLLHPLHLHHLL----HPLHLLHPLHLHHLHHLLHPLHL--------HHLLHPLHL 1767