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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915614
Clone id YMU001_000073_F07
Library
Length 439
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGCTTTTGTTCGTCATTCTTTGAGCTTGGGCTCGTCTCACTGCCTGAATAG
GTATTACTGTCTCATTTTCTGACCCTTCACTGGAAGGCACTGATTCCAGCATGTACAAGG
TAGTTTATTCTCCTTTCCTCGGGTACTTAGGGCAATCAGGAATTAAATGAGTAATTTCAC
ACTCGGTGCAATATGCGTTGACTCTAATGATTTCATCATGATGACAGTCTCTTAGCCAAT
GGTCTCCACCACACTTGTAGAAGGGTCCCTTAGGCTGTAGAGGTGCTCCTTGAACTCCTC
TGTGTTGGTATGCATGTCTCTGCTCGCCCATGCCGACGTTGGCTATGAACTACAATGTTC
GTTCATCCAAGCTATATCTTCCTTCTCCTGCTGCCTGTGCAGCTGTTGGTGGTCATGCAC
CTCATATCATGCTCCATGG
■■Homology search results ■■ -
sp_hit_id Q66DW7
Definition sp|Q66DW7|ACPH_YERPS Acyl carrier protein phosphodiesterase OS=Yersinia pseudotuberculosis
Align length 19
Score (bit) 29.6
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915614|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F07.
         (439 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66DW7|ACPH_YERPS Acyl carrier protein phosphodiesterase OS=Y...    30   5.7  
sp|Q8ZC31|ACPH_YERPE Acyl carrier protein phosphodiesterase OS=Y...    30   5.7  
sp|Q9R032|XPR1_MUSSP Xenotropic and polytropic retrovirus recept...    29   7.5  
sp|Q6UWU4|CF089_HUMAN Uncharacterized protein C6orf89 OS=Homo sa...    29   7.5  
sp|Q6ZST2|ZCH23_HUMAN Zinc finger CCHC domain-containing protein...    29   9.8  
sp|Q5R9Q8|CF089_PONAB Uncharacterized protein C6orf89 homolog OS...    29   9.8  
sp|P18696|PUTX_EMENI Proline-specific permease OS=Emericella nid...    29   9.8  

>sp|Q66DW7|ACPH_YERPS Acyl carrier protein phosphodiesterase
           OS=Yersinia pseudotuberculosis GN=acpH PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  VLLSHFLTLHWKALIPACT 117
           VL  HFL  HW  L+P CT
Sbjct: 79  VLWDHFLARHWDQLVPNCT 97


>sp|Q8ZC31|ACPH_YERPE Acyl carrier protein phosphodiesterase
           OS=Yersinia pestis GN=acpH PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  VLLSHFLTLHWKALIPACT 117
           VL  HFL  HW  L+P CT
Sbjct: 79  VLWDHFLARHWDQLVPNCT 97


>sp|Q9R032|XPR1_MUSSP Xenotropic and polytropic retrovirus receptor
           1 OS=Mus spretus GN=Xpr1 PE=1 SV=1
          Length = 696

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 360 EHCSS*PTSAWASRDMHTNTEEFKEHLYSLRDPSTSVVET 241
           EH S+  T  W  R  +T  E FK+ LYS +D + SV  T
Sbjct: 5   EHLSAHITPEW--RKQYTQYEAFKDMLYSAQDQAPSVEVT 42


>sp|Q6UWU4|CF089_HUMAN Uncharacterized protein C6orf89 OS=Homo
           sapiens GN=C6orf89 PE=2 SV=1
          Length = 347

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
 Frame = -1

Query: 346 IANVGMGEQRHAYQHRGVQGAPLQPKGPFYKCGGDHWLRDCHHDEIIRVNAYCTECEITH 167
           IA   M E +    H G +  P     P+       W  DC  +E   + A CT C   H
Sbjct: 111 IAKKYMSENKGVPLHGGDEDRPFPDFDPW-------WTNDCEQNESEPIPANCTGCAQKH 163

Query: 166 ----LIPDCPK 146
               L+ D P+
Sbjct: 164 LKVMLLEDAPR 174


>sp|Q6ZST2|ZCH23_HUMAN Zinc finger CCHC domain-containing protein 23
           OS=Homo sapiens GN=ZCCHC23 PE=2 SV=1
          Length = 131

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 289 GAPLQPKGPFYKCGGDHWLRDC 224
           G+  +P  P   CGGDHW  DC
Sbjct: 81  GSMRKPARPCPICGGDHWRVDC 102


>sp|Q5R9Q8|CF089_PONAB Uncharacterized protein C6orf89 homolog
           OS=Pongo abelii PE=2 SV=1
          Length = 347

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
 Frame = -1

Query: 346 IANVGMGEQRHAYQHRGVQGAPLQPKGPFYKCGGDHWLRDCHHDEIIRVNAYCTECEITH 167
           IA   M E +    H G +  P     P+       W  DC  +E   + A CT C   H
Sbjct: 111 IAKKYMSENKGVPLHVGDEDRPFPDFDPW-------WTNDCEQNESEPIPANCTGCAQKH 163

Query: 166 ----LIPDCPK 146
               L+ D P+
Sbjct: 164 LKVMLLEDAPR 174


>sp|P18696|PUTX_EMENI Proline-specific permease OS=Emericella
           nidulans GN=prnB PE=2 SV=2
          Length = 550

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 57  IGITVSFSDPSLE-GTDSSMYKVVYSPFLGYLGQSGIK*VISHSVQYALTL 206
           IG+TV+++DP+LE G +S       SPF+  +  +GI   ++H V  A+ +
Sbjct: 293 IGVTVAYNDPTLEAGVESGGSGAGASPFVVAIQNAGIG-GLNHVVNAAILI 342
tr_hit_id B7PY06
Definition tr|B7PY06|B7PY06_IXOSC Reverse transcriptase, putative OS=Ixodes scapularis
Align length 78
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915614|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F07.
         (439 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7PY06|B7PY06_IXOSC Reverse transcriptase, putative OS=Ixodes...    37   0.64 
tr|B6IGX1|B6IGX1_CAEBR Putative uncharacterized protein OS=Caeno...    36   1.1  
tr|Q2R394|Q2R394_ORYSJ Os11g0531300 protein OS=Oryza sativa subs...    35   1.4  
tr|B8BKV6|B8BKV6_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|A2QGT9|A2QGT9_ASPNC Similarity to hypothetical zinc-finger pr...    35   1.4  
tr|B6IHV2|B6IHV2_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|B6IKW2|B6IKW2_CAEBR Putative uncharacterized protein OS=Caeno...    34   4.1  
tr|B6IJP2|B6IJP2_CAEBR Putative uncharacterized protein OS=Caeno...    34   4.1  
tr|B6IHW4|B6IHW4_CAEBR Putative uncharacterized protein OS=Caeno...    34   4.1  
tr|B7YEG9|B7YEG9_9BACI 3-isopropylmalate dehydratase, large subu...    33   5.4  
tr|Q7S753|Q7S753_NEUCR Putative uncharacterized protein OS=Neuro...    33   5.4  
tr|B8P410|B8P410_9APHY Predicted protein OS=Postia placenta Mad-...    33   5.4  
tr|B2WP59|B2WP59_PYRTR Putative uncharacterized protein OS=Pyren...    33   7.0  
tr|A3CBX1|A3CBX1_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|B0CG70|B0CG70_ACAM1 Putative uncharacterized protein OS=Acary...    33   9.2  

>tr|B7PY06|B7PY06_IXOSC Reverse transcriptase, putative OS=Ixodes
           scapularis GN=IscW_ISCW020343 PE=4 SV=1
          Length = 448

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 253 CGGDHWLRDCHHDEIIRVNAYCTECEITHLIPD--CPKYPRKGE*TTLYMLESVPSSEGS 80
           C G+H   +C   +  R    C  C + H   D  CP Y R+ E T++ + ES+P +E  
Sbjct: 105 CTGNHLPGECPLSDTPR----CPNCGLNHSALDRQCPAYQREREITSVMVRESIPRAEAR 160

Query: 79  ENETVIPIQAVRRAQAQR 26
           E     P     RAQ QR
Sbjct: 161 EVIAGRP----HRAQRQR 174


>tr|B6IGX1|B6IGX1_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG25708 PE=4 SV=1
          Length = 2435

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 274 PKGPFYKCGGDHWLRDCHHDEIIRVNAYCTECE 176
           P  P +KCGG+HW RDC      +    CT C+
Sbjct: 258 PPSPCFKCGGNHWARDC------QKQVKCTLCQ 284



 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 274  PKGPFYKCGGDHWLRDCHHDEIIRVNAYCTECE 176
            P  P +KCGG+HW RDC      +    CT C+
Sbjct: 1442 PPSPCFKCGGNHWARDC------QKQVKCTLCQ 1468


>tr|Q2R394|Q2R394_ORYSJ Os11g0531300 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0531300 PE=2 SV=1
          Length = 445

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 289 GAPLQPKG-PFYKCGGD-HWLRDCHHDEIIRVNAYCTEC-EITHLIPDCP 149
           G+P  P+  P Y+CG D HW R+C       +N+ C  C ++ H   +CP
Sbjct: 394 GSPFTPRSNPCYRCGEDGHWSRNCPKPASSPLNSPCYNCGKLGHWRGNCP 443


>tr|B8BKV6|B8BKV6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36349 PE=4 SV=1
          Length = 445

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 289 GAPLQPKG-PFYKCGGD-HWLRDCHHDEIIRVNAYCTEC-EITHLIPDCP 149
           G+P  P+  P Y+CG D HW R+C       +N+ C  C ++ H   +CP
Sbjct: 394 GSPFTPRSNPCYRCGEDGHWSRNCPKPASSPLNSPCYNCGKLGHWRGNCP 443


>tr|A2QGT9|A2QGT9_ASPNC Similarity to hypothetical zinc-finger
           protein 413R - Chilo iridescent virus OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=An03g04470
           PE=4 SV=1
          Length = 571

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 328 GEQRHAYQHRGVQGAPLQPKGPFYKC 251
           G Q HAYQHRG  G+ + P+G  ++C
Sbjct: 478 GTQNHAYQHRGTTGSDVLPEGLIWEC 503


>tr|B6IHV2|B6IHV2_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG26959 PE=4 SV=1
          Length = 1114

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 274 PKGPFYKCGGDHWLRDCHHDEIIRVNAYCTECE 176
           P  P +KCGG HW RDC      +    CT C+
Sbjct: 258 PPSPCFKCGGKHWARDC------QKQVKCTLCQ 284


>tr|B6IKW2|B6IKW2_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG26159 PE=4 SV=1
          Length = 1333

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 274 PKGPFYKCGGDHWLRDC 224
           P  P YKCGG+HW ++C
Sbjct: 265 PPSPCYKCGGNHWAKEC 281


>tr|B6IJP2|B6IJP2_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG27950 PE=4 SV=1
          Length = 706

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 274 PKGPFYKCGGDHWLRDC 224
           P  P YKCGG+HW ++C
Sbjct: 86  PPSPCYKCGGNHWAKEC 102


>tr|B6IHW4|B6IHW4_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG28124 PE=4 SV=1
          Length = 541

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 274 PKGPFYKCGGDHWLRDC 224
           P  P YKCGG+HW ++C
Sbjct: 252 PPSPCYKCGGNHWAKEC 268


>tr|B7YEG9|B7YEG9_9BACI 3-isopropylmalate dehydratase, large subunit
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3145 PE=4
           SV=1
          Length = 477

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
 Frame = -2

Query: 306 NTEEFKEHLYSLRDPSTSVVETIG*E--------TVIMMKSLESTH 193
           N EEF  HLY L DP+  +V  IG E        T++   S  STH
Sbjct: 89  NCEEFGIHLYDLNDPNNGIVHVIGPELGLTTPGKTIVCGDSHTSTH 134