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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915616
Clone id YMU001_000073_F09
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAAAAGTTCGACCATTTTCAGCATATCATGAAATTTATGGGGAAGAGCACAGAGCTTGTG
CATCTCTTAATTATGGAAGTACTCTGTAATATTTACAAGGGAGCCTTCCGGCCTTCCATT
TTAGTAAAAGAGTGATTTTCCACAATGTAAAGAAACTTGCGGTAGAAATATACGGCGTGA
TTGCATCGCTGGTAATGAAAAACCTGGCTCACAACAAGCTAGTGAGGGTATAAGCTGTTG
ATCTTACTTGATCGCTGTTAATACCAGTGCAAACCAAGTTATATACTTCTCCCTTTGGTT
GAAAATTTGATCAAAATTCTGACCAGCCAGCAGGCTGGGTGTGGTTAGAAGACTGCAGGA
CTCCTGTGGAGTAAGTTGTTGAGGTCTTGAGTCTGTCATTCTCATTTAAACCCCACACTT
CCGGCACATCGTTGTTGAAAGCCTTCCACTTTTGTGGCTCATTAGCAGAAAACCCTGGAG
AGCTTCCACTGTCT
■■Homology search results ■■ -
sp_hit_id O57429
Definition sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus
Align length 30
Score (bit) 30.8
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915616|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F09.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=...    31   3.5  
sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitoch...    31   3.5  
sp|P42534|HYDL_STRCO Putative polyketide hydroxylase OS=Streptom...    31   3.5  
sp|Q9VWB0|U584_DROME UPF0584 protein CG32226 OS=Drosophila melan...    30   7.9  

>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2
           OS=Gallus gallus GN=USP2 PE=2 SV=1
          Length = 357

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = -1

Query: 200 FHYQRCNHAVYFYRKFLYIVENHSFTKMEG 111
           F  Q CNHAVY     LY V NHS T M G
Sbjct: 283 FASQSCNHAVY----NLYAVSNHSGTTMGG 308


>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase,
           mitochondrial OS=Dictyostelium discoideum GN=l2hgdh PE=3
           SV=1
          Length = 446

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -2

Query: 445 KAFNNDVPEVWGLNENDRLKTSTTYSTGVLQSSNHTQPAGWSEF*SNFQPKGEV---YNL 275
           K+F ND+ E +G +    +K +         S++        +   + + +  +   Y++
Sbjct: 179 KSFGNDITEKFGKDSKSEIKLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSI 238

Query: 274 VCTGINSDQVRSTAY 230
           VC G+NSD++   AY
Sbjct: 239 VCGGMNSDRIAKVAY 253


>sp|P42534|HYDL_STRCO Putative polyketide hydroxylase
           OS=Streptomyces coelicolor GN=SCO5321 PE=3 SV=2
          Length = 627

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 424 PEVWGLNENDRLKTSTTYSTGVLQSSNHTQPAGWSE 317
           P +W     DRL T   Y   ++  S+  QP GW E
Sbjct: 511 PHLWVRRGQDRLSTLDLYEDSLVLLSDAAQPTGWHE 546


>sp|Q9VWB0|U584_DROME UPF0584 protein CG32226 OS=Drosophila
           melanogaster GN=CG32226 PE=1 SV=2
          Length = 1350

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 490 SGSSPGFSANEPQKWKAFNNDVPEVWGLNENDRLKTSTTYSTGVLQSSNHTQPA 329
           +G  PG   NE  +WK   +  P +  LN NDR K      T  L+ ++H   A
Sbjct: 452 NGGPPGLLKNE--RWKLSADSPPTIGSLNLNDRHK----QRTAALRETSHASSA 499
tr_hit_id B2VGD4
Definition tr|B2VGD4|B2VGD4_ERWT9 Putative two-component system sensor kinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
Align length 24
Score (bit) 33.1
E-value 7.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915616|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F09.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2VGD4|B2VGD4_ERWT9 Putative two-component system sensor kina...    33   7.3  
tr|B4DAC2|B4DAC2_9BACT Putative uncharacterized protein OS=Chtho...    33   7.3  
tr|B4KDP4|B4KDP4_DROMO GI23641 OS=Drosophila mojavensis GN=GI236...    33   7.3  
tr|Q58PV9|Q58PV9_ERWAM Putative uncharacterized protein OS=Erwin...    33   9.5  
tr|Q57UU3|Q57UU3_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.5  

>tr|B2VGD4|B2VGD4_ERWT9 Putative two-component system sensor kinase
           OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
           GN=yehU PE=4 SV=1
          Length = 562

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +1

Query: 274 PSYILLPLVENLIKILTSQQAGCG 345
           P++IL P+VEN IK  TSQ  GCG
Sbjct: 464 PAFILQPIVENAIKHGTSQLIGCG 487


>tr|B4DAC2|B4DAC2_9BACT Putative uncharacterized protein
           OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_5863
           PE=4 SV=1
          Length = 437

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
 Frame = +3

Query: 27  HEIYGEEHRACASLNYGSTL*YLQGSLPAFHFSKRVIFHNVKKLAVEIYGVIASLVMKN- 203
           H +Y EE+R  A  NY   L Y+ G    F+F    +   +  +A+ ++G +A L++KN 
Sbjct: 239 HGLY-EEYRNLA--NYVDFL-YMPGRKAQFYFINEGLLSTIPSIALSLFGAVAGLLLKNQ 294

Query: 204 ---------------LAHNKLVRV*AVDLT*SLLIPVQTKLYTSPF 296
                          +A   L RV A+DL      P+  +++TS F
Sbjct: 295 KVLPRRKIAWLVGAGVAFIVLGRVWAIDL------PLIKRIWTSSF 334


>tr|B4KDP4|B4KDP4_DROMO GI23641 OS=Drosophila mojavensis GN=GI23641
           PE=4 SV=1
          Length = 1176

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 472 FSANEPQK--WK-AFNNDVPEVWGLNENDRLKTSTTYSTGVLQSSNHTQ 335
           FS ++PQ   WK  FNN +  VW  NE D L++   + +   Q+  H +
Sbjct: 312 FSKSDPQLMLWKHQFNNPIVSVWHTNEADELESIDLFGSAHWQAEQHVE 360


>tr|Q58PV9|Q58PV9_ERWAM Putative uncharacterized protein OS=Erwinia
           amylovora PE=4 SV=1
          Length = 564

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 274 PSYILLPLVENLIKILTSQQAGCG 345
           P++IL P++EN IK  TSQ  GCG
Sbjct: 464 PAFILQPIIENAIKHGTSQLIGCG 487


>tr|Q57UU3|Q57UU3_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.4.320 PE=4 SV=1
          Length = 418

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 72  YGSTL*YLQGSLPAFHFSKRVIFHNVKKLAVEIYGVIASLV 194
           +G ++  +   +PA  F K  +F NV  LA  +YG+I ++V
Sbjct: 305 FGFSMLLVYTGIPALFFMKSAVFGNVSLLATSVYGIIWNVV 345