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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915617
Clone id YMU001_000073_F11
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACTGTGGAGTTGGAAAGTGGGCAGACATCAAAAAGTTTTCTTTTTCGAACAGTGTCTC
TCGCTCTTCTACTGACCTAAAGGATAAATGGCGGAATCTAGTAAGAGCCAGTAATACACA
TTTTAAGATGGGAGGAAAGGTGGAAAGGCATCGAAAACATTCAGTTTCTCCGGTTCCAGG
ACCCATCCTGATACAAGTGCGCGAGCTGACAAAACAGGCTTTACCAGTAAATATTGTGAC
TGGAGTAAGCAGAACCGGCCGCAATGTGTCAAGAAAACAGATGATTTGAGATGCTTCTGT
TGTATAAAATGTATGGGTAAGTTATTGCCTACGACGTTCACACGGTGGCTGTCTGTATAA
GAAGACAGCAGACAGGTTTCAAGCAGATTTGGAAGCATGTAAAATGACTGTTGTATTGTG
TAATTTCACGTTTATG
■■Homology search results ■■ -
sp_hit_id P98164
Definition sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens
Align length 61
Score (bit) 30.8
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915617|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F11.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr...    31   2.5  
sp|P78619|CATB_EMENI Catalase B OS=Emericella nidulans GN=catB P...    30   3.3  
sp|Q877A8|CATB_ASPOR Catalase B OS=Aspergillus oryzae GN=catB PE...    30   3.3  
sp|Q92405|CATB_ASPFU Catalase B OS=Aspergillus fumigatus GN=catB...    30   3.3  
sp|Q8X1P0|CATA_ERYGR Catalase OS=Erysiphe graminis subsp. hordei...    30   3.3  
sp|Q9C169|CAT3_NEUCR Catalase-3 OS=Neurospora crassa GN=cat-3 PE...    30   3.3  
sp|Q9Y7C2|CATB_AJECA Catalase B OS=Ajellomyces capsulata GN=CATB...    30   4.3  
sp|P95539|CATE_PSEPU Catalase HPII OS=Pseudomonas putida GN=katE...    30   5.6  
sp|Q9I1W8|CATE_PSEAE Catalase HPII OS=Pseudomonas aeruginosa GN=...    30   5.6  
sp|Q55DH8|CATB_DICDI Catalase-B OS=Dictyostelium discoideum GN=c...    30   5.6  
sp|P55305|CATA_EMENI Catalase A OS=Emericella nidulans GN=catA P...    30   5.6  
sp|P78574|CATA_ASPFU Catalase A OS=Aspergillus fumigatus GN=catA...    30   5.6  
sp|Q5DRE2|PCDC1_PANTR Protocadherin alpha-C1 OS=Pan troglodytes ...    30   5.7  
sp|Q9H158|PCDC1_HUMAN Protocadherin alpha-C1 OS=Homo sapiens GN=...    30   5.7  
sp|Q96QF7|ACRC_HUMAN Acidic repeat-containing protein OS=Homo sa...    30   5.7  
sp|Q2VWH6|FEZF2_BOVIN Fez family zinc finger protein 2 OS=Bos ta...    29   7.3  
sp|P21179|CATE_ECOLI Catalase HPII OS=Escherichia coli (strain K...    29   9.6  
sp|P24027|PA2C_CRODU Phospholipase A2 CB2 OS=Crotalus durissus t...    29   9.8  
sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=...    29   9.8  

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein
            2 OS=Homo sapiens GN=LRP2 PE=1 SV=3
          Length = 4655

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 314  IHFIQQKHLKSSVFLTHCGRFCLLQSQYLLVKPVLSARALVSGWVLEPEKLNVFDAFPPF 135
            +H  +Q +  +    + C   CLL SQ     P   +    SGW L P+ LN      PF
Sbjct: 1692 VHPSKQPNSVNPCAFSRCSHLCLLSSQ----GPHFYSCVCPSGWSLSPDLLNCLRDDQPF 1747

Query: 134  L 132
            L
Sbjct: 1748 L 1748


>sp|P78619|CATB_EMENI Catalase B OS=Emericella nidulans GN=catB PE=2
           SV=2
          Length = 722

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 162 YTDEGNFDIVGNNIPVFFIQ 181


>sp|Q877A8|CATB_ASPOR Catalase B OS=Aspergillus oryzae GN=catB PE=2
           SV=1
          Length = 725

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 163 YTDEGNFDIVGNNIPVFFIQ 182


>sp|Q92405|CATB_ASPFU Catalase B OS=Aspergillus fumigatus GN=catB
           PE=1 SV=1
          Length = 728

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 164 YTDEGNFDIVGNNIPVFFIQ 183


>sp|Q8X1P0|CATA_ERYGR Catalase OS=Erysiphe graminis subsp. hordei
           GN=CAT1 PE=3 SV=1
          Length = 718

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 165 YTDEGNFDIVGNNIPVFFIQ 184


>sp|Q9C169|CAT3_NEUCR Catalase-3 OS=Neurospora crassa GN=cat-3 PE=1
           SV=1
          Length = 719

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 164 YTDEGNFDIVGNNIPVFFIQ 183


>sp|Q9Y7C2|CATB_AJECA Catalase B OS=Ajellomyces capsulata GN=CATB
           PE=2 SV=1
          Length = 728

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 169 YTDEGNFDIVGNNVPVFFIQ 188


>sp|P95539|CATE_PSEPU Catalase HPII OS=Pseudomonas putida GN=katE
           PE=3 SV=1
          Length = 711

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 154 YTDEGNFDLVGNNMPVFFIQ 173


>sp|Q9I1W8|CATE_PSEAE Catalase HPII OS=Pseudomonas aeruginosa
           GN=katE PE=3 SV=1
          Length = 709

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 152 YTDEGNFDLVGNNMPVFFIQ 171


>sp|Q55DH8|CATB_DICDI Catalase-B OS=Dictyostelium discoideum GN=catB
           PE=1 SV=1
          Length = 692

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 YTDSHRVNVVGNNLPIHFIQ 300
           YTD    ++VGNN+P+ FIQ
Sbjct: 131 YTDEGNYDLVGNNMPVFFIQ 150
tr_hit_id A9T4W8
Definition tr|A9T4W8|A9T4W8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 95
Score (bit) 70.1
E-value 5.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915617|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_F11.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T4W8|A9T4W8_PHYPA Predicted protein OS=Physcomitrella paten...    70   5e-11
tr|A9S2J5|A9S2J5_PHYPA Predicted protein OS=Physcomitrella paten...    69   1e-10
tr|Q8RXU8|Q8RXU8_ARATH Putative uncharacterized protein At1g1746...    64   5e-09
tr|Q3EBL5|Q3EBL5_ARATH Uncharacterized protein At2g37025.1 OS=Ar...    58   3e-07
tr|Q0WKW3|Q0WKW3_ARATH Putative uncharacterized protein OS=Arabi...    58   3e-07
tr|A7P6K5|A7P6K5_VITVI Chromosome chr9 scaffold_7, whole genome ...    58   3e-07
tr|A5AED8|A5AED8_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5AI08|A5AI08_VITVI Putative uncharacterized protein OS=Vitis...    56   8e-07
tr|Q6YZ61|Q6YZ61_ORYSJ Os02g0776700 protein OS=Oryza sativa subs...    54   4e-06
tr|Q6YZ60|Q6YZ60_ORYSJ MYB transcription factor-like OS=Oryza sa...    54   4e-06
tr|B8AJG9|B8AJG9_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|Q94AX9|Q94AX9_ARATH At1g72650/F28P22_16 (MYB transcription fa...    52   2e-05
tr|Q8LG08|Q8LG08_ARATH Putative uncharacterized protein OS=Arabi...    52   2e-05
tr|A7NZM8|A7NZM8_VITVI Chromosome chr6 scaffold_3, whole genome ...    50   4e-05
tr|A4RTW7|A4RTW7_OSTLU Predicted protein OS=Ostreococcus lucimar...    49   2e-04
tr|Q01D70|Q01D70_OSTTA Myb family transcription factor (ISS) OS=...    45   0.001
tr|A7PT53|A7PT53_VITVI Chromosome chr8 scaffold_29, whole genome...    45   0.002
tr|Q9CAI0|Q9CAI0_ARATH Putative uncharacterized protein F28P22.1...    40   0.044
tr|B2BGR6|B2BGR6_OLEEU Putative DNA binding protein (Fragment) O...    40   0.044
tr|A4S754|A4S754_OSTLU Predicted protein OS=Ostreococcus lucimar...    40   0.044
tr|Q00VD9|Q00VD9_OSTTA MYB transcription factor-like [Oryza sati...    39   0.17 
tr|Q9LQJ9|Q9LQJ9_ARATH F28G4.5 protein OS=Arabidopsis thaliana G...    38   0.22 
tr|Q9LNQ9|Q9LNQ9_ARATH F1L3.16 OS=Arabidopsis thaliana PE=4 SV=1       38   0.22 
tr|Q84ZU4|Q84ZU4_NICGU Telomere binding protein TBP1 OS=Nicotian...    35   1.4  
tr|B8AYT6|B8AYT6_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|A0ZPR8|A0ZPR8_TOBAC Telomere binding protein (Fragment) OS=Ni...    35   1.4  
tr|A0JBS3|A0JBS3_SOLLC Telomere binding protein OS=Solanum lycop...    35   1.4  
tr|Q01CT8|Q01CT8_OSTTA Homology to unknown gene (Fragment) OS=Os...    35   1.9  
tr|Q9LL45|Q9LL45_ORYSA Telomere binding protein-1 OS=Oryza sativ...    35   2.4  
tr|Q2LMD5|Q2LMD5_MALDO MYBR6 OS=Malus domestica PE=2 SV=1              35   2.4  

>tr|A9T4W8|A9T4W8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168075 PE=4 SV=1
          Length = 929

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
 Frame = +2

Query: 5   CGVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPGP 184
           CG GKWADIKK            DLKDKWRNL+RAS        + ER +K   + +P P
Sbjct: 663 CGGGKWADIKKLAFSNVGYRTAVDLKDKWRNLLRASRAQLHPAKQGER-KKQFTAAIPAP 721

Query: 185 ILIQVRELTKQALPVNIVT----GVSRTGRNVSRK 277
           IL +VREL      ++  T      SR+GR V RK
Sbjct: 722 ILARVRELAALQNQISPTTETGSSTSRSGRTVHRK 756


>tr|A9S2J5|A9S2J5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162465 PE=4 SV=1
          Length = 759

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 40/95 (42%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = +2

Query: 5   CGVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPGP 184
           CG GKWADIKK            DLKDKWRNL+RAS        + ER +K   + +P P
Sbjct: 666 CGGGKWADIKKLAFSNVGYRTAVDLKDKWRNLLRASRAQLHPAKQGER-KKQFTAAIPAP 724

Query: 185 ILIQVRELTKQALPVNIVTGVS----RTGRNVSRK 277
           IL +VREL      ++   G      R+GR V RK
Sbjct: 725 ILARVRELAALQNQISPTAGTGSSTIRSGRTVHRK 759


>tr|Q8RXU8|Q8RXU8_ARATH Putative uncharacterized protein At1g17460
           (MYB transcription factor) OS=Arabidopsis thaliana
           GN=At1g17460 PE=2 SV=1
          Length = 604

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 33/82 (40%), Positives = 47/82 (57%)
 Frame = +2

Query: 8   GVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPGPI 187
           GVGKW +IKK            DLKDKWRNL +AS+++   GG     +KH    +P  I
Sbjct: 515 GVGKWTEIKKLSFSPYTHRTTVDLKDKWRNLQKASSSNRMEGGL----KKHGSMAIPTHI 570

Query: 188 LIQVRELTKQALPVNIVTGVSR 253
           ++QVREL ++  P++ V   +R
Sbjct: 571 MLQVRELAQKQSPISRVVSKAR 592


>tr|Q3EBL5|Q3EBL5_ARATH Uncharacterized protein At2g37025.1
           OS=Arabidopsis thaliana GN=At2g37025 PE=4 SV=1
          Length = 410

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 36/69 (52%)
 Frame = +2

Query: 2   HCGVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPG 181
           H GVGKW DIK             D++DKWRNL++AS       G+ E  RK     +P 
Sbjct: 309 HFGVGKWTDIKNHFFHYAAHRKPVDIRDKWRNLLKASYNEKHNDGQAEEKRKSVARSIPK 368

Query: 182 PILIQVREL 208
            IL +VREL
Sbjct: 369 DILHRVREL 377


>tr|Q0WKW3|Q0WKW3_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 410

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 36/69 (52%)
 Frame = +2

Query: 2   HCGVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPG 181
           H GVGKW DIK             D++DKWRNL++AS       G+ E  RK     +P 
Sbjct: 309 HFGVGKWTDIKNHFFHYAAHRKPVDIRDKWRNLLKASYNEKHNDGQAEEKRKSVARSIPK 368

Query: 182 PILIQVREL 208
            IL +VREL
Sbjct: 369 DILHRVREL 377


>tr|A7P6K5|A7P6K5_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034106001
           PE=4 SV=1
          Length = 562

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 32/82 (39%), Positives = 42/82 (51%)
 Frame = +2

Query: 8   GVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPGPI 187
           G G+W++IK+            DLKDKWRNL+RAS        K    RKH   P+P  I
Sbjct: 465 GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLRASFA-LSPAEKGMSSRKHGSMPIPAAI 523

Query: 188 LIQVRELTKQALPVNIVTGVSR 253
           L++VREL +    V    G S+
Sbjct: 524 LLKVRELAEMHAQVAPNLGTSK 545


>tr|A5AED8|A5AED8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_005454 PE=4 SV=1
          Length = 867

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 32/82 (39%), Positives = 42/82 (51%)
 Frame = +2

Query: 8    GVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHFKMGGKVERHRKHSVSPVPGPI 187
            G G+W++IK+            DLKDKWRNL+RAS        K    RKH   P+P  I
Sbjct: 770  GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLRASFA-LSPAEKGMSSRKHGSMPIPAAI 828

Query: 188  LIQVRELTKQALPVNIVTGVSR 253
            L++VREL +    V    G S+
Sbjct: 829  LLKVRELAEMHAQVAPNLGTSK 850


>tr|A5AI08|A5AI08_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006318 PE=4 SV=1
          Length = 587

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
 Frame = +2

Query: 8   GVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHF----KMGGK-VERHRKHSVSP 172
           GVG+W +IK+            DLKDKWRNL+RAS T      ++G K VE+ RKH+   
Sbjct: 477 GVGRWTEIKRLLFSSSTHRTSVDLKDKWRNLLRASCTRLHNKREVGLKLVEQGRKHASHQ 536

Query: 173 VPGPILIQVREL 208
           +P  +L +VREL
Sbjct: 537 IPQSVLGRVREL 548


>tr|Q6YZ61|Q6YZ61_ORYSJ Os02g0776700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0013K01.35-1 PE=2 SV=1
          Length = 621

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +2

Query: 8   GVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHF--KMGGKVERHRKHSVSPVPG 181
           G GKW++I++            DLKDKWRNL+RAS T    +  G   R    S  P+P 
Sbjct: 521 GAGKWSEIRRLAFSSYSYRTSVDLKDKWRNLIRASQTQLSTENDGVCPRKSNPSAIPIPV 580

Query: 182 PILIQVRELTK 214
            IL++V++L +
Sbjct: 581 SILLRVKKLAE 591


>tr|Q6YZ60|Q6YZ60_ORYSJ MYB transcription factor-like OS=Oryza
           sativa subsp. japonica GN=OSJNBb0013K01.35-2 PE=4 SV=1
          Length = 409

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +2

Query: 8   GVGKWADIKKFXXXXXXXXXXTDLKDKWRNLVRASNTHF--KMGGKVERHRKHSVSPVPG 181
           G GKW++I++            DLKDKWRNL+RAS T    +  G   R    S  P+P 
Sbjct: 309 GAGKWSEIRRLAFSSYSYRTSVDLKDKWRNLIRASQTQLSTENDGVCPRKSNPSAIPIPV 368

Query: 182 PILIQVRELTK 214
            IL++V++L +
Sbjct: 369 SILLRVKKLAE 379