BP915621
Clone id YMU001_000073_G03
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AATTAATTCGATAGGTACAAGGAAGCGGAGCCCTGATACACAAGAGTGAAATTATACAGA
ACCGAGTTGATTCATGAGAGTAAATGCATATGCTTGCATGGTGAGCGTGAATTTGCTCAT
TGCATGGCAAATTTGTTTGCTGGGTTTCTTTGTCCCCGCTCTAGGGGTGTTCGATGTATG
CACTCTGGTCCGGGTGGTCCAGGTAAACCCTGATGAATGTTTAACCCAAGCTCTTGGCTG
ATTTATTTTGACATTCAAATAGCTGGTGAGCTGAAGGGGAATTTGCACGGCAGATTTGTT
TGCTTGAGCTCTTGGCTTATTTGTCCGACATTTGAATAGCTTGTATAGTTGAAGTGGGAT
TATAGCCTTGAGTTCCCTTCTGAGTGCAGAGACATACACTGGGATGGTGAGCAATTGTAC
GATATACTTATTTATTTGAGCTCCACTGATTTTTATGCCATTGGCTAGAGCCTTGATTAT
GGTGGATTTGGCCATTGGTAAGCAAAAGGGAAAGCTGTGATTATGGAAACTCTTTGTTTT
GACCAGTGCATCAGCATT
■■Homology search results ■■ -
sp_hit_id P23206
Definition sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus
Align length 15
Score (bit) 25.4
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915621|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_G03.
(558 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus GN... 25 1.5
sp|Q306W8|POLN_EEEV8 Non-structural polyprotein OS=Eastern equin... 32 2.1
sp|Q306W6|POLN_EEEV1 Non-structural polyprotein OS=Eastern equin... 32 2.7
sp|A0MSJ1|CORA1_DANRE Collagen alpha-1(XXVII) chain OS=Danio rer... 32 2.7
sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus... 26 3.1
sp|Q29442|CO4A4_BOVIN Collagen alpha-4(IV) chain (Fragment) OS=B... 25 3.3
sp|Q28247|CO4A5_CANFA Collagen alpha-5(IV) chain OS=Canis famili... 24 3.9
sp|P12106|CO9A1_CHICK Collagen alpha-1(IX) chain OS=Gallus gallu... 26 4.1
sp|O76368|COL99_CAEEL Putative cuticle collagen 99 OS=Caenorhabd... 31 4.7
sp|Q9UMD9|COHA1_HUMAN Collagen alpha-1(XVII) chain OS=Homo sapie... 25 5.1
sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain OS=Bos taurus... 25 5.1
sp|Q96P44|COLA1_HUMAN Collagen alpha-1(XXI) chain OS=Homo sapien... 27 5.2
sp|P02462|CO4A1_HUMAN Collagen alpha-1(IV) chain OS=Homo sapiens... 26 6.5
sp|Q90584|COHA1_CHICK Collagen alpha-1(XVII) chain OS=Gallus gal... 25 6.5
sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapien... 30 8.0
sp|P04258|CO3A1_BOVIN Collagen alpha-1(III) chain OS=Bos taurus ... 30 8.0
sp|Q9R1N9|CODA1_MOUSE Collagen alpha-1(XIII) chain OS=Mus muscul... 24 8.8

>sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus
GN=COL10A1 PE=2 SV=1
Length = 674

Score = 25.4 bits (54), Expect(2) = 1.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2

Query: 230 LGLNIHQGLPGPPGP 186
+ L QG+PGPPGP
Sbjct: 53 VSLRGEQGIPGPPGP 67



Score = 24.6 bits (52), Expect(2) = 1.5
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Frame = -2

Query: 209 GLPGPPGPECIHRTPL--------ERGQRNP 141
GLPGPPGP + L ERG P
Sbjct: 95 GLPGPPGPSATGKPGLPGLPGKQGERGLNGP 125


>sp|Q306W8|POLN_EEEV8 Non-structural polyprotein OS=Eastern equine
encephalitis virus (strain PE-3.0815) PE=2 SV=2
Length = 2473

Score = 32.0 bits (71), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2

Query: 194 PGPECIHRTPLERGQRNPANKFAMQ*ANSRSPCKHMH 84
PGP+C ++ L+ G + K+ + N R+P KH H
Sbjct: 1186 PGPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHH 1222


>sp|Q306W6|POLN_EEEV1 Non-structural polyprotein OS=Eastern equine
encephalitis virus (strain PE-0.0155) PE=2 SV=2
Length = 2470

Score = 31.6 bits (70), Expect = 2.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2

Query: 194 PGPECIHRTPLERGQRNPANKFAMQ*ANSRSPCKHMH 84
PGP+C ++ L+ G + K+ + N R+P KH H
Sbjct: 1186 PGPQCTYKADLDLGIPSMIGKYDIIFVNVRTPYKHHH 1222


>sp|A0MSJ1|CORA1_DANRE Collagen alpha-1(XXVII) chain OS=Danio rerio
GN=col27a1 PE=2 SV=1
Length = 1658

Score = 31.6 bits (70), Expect = 2.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2

Query: 227 GLNIHQGLPGPPGPECIHRTPLERGQRNPA 138
GL GLPGPPGP P +RG R P+
Sbjct: 427 GLKGEPGLPGPPGPPGQPGLPGKRGPRGPS 456


>sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus
GN=Col4a1 PE=2 SV=4
Length = 1669

Score = 25.8 bits (55), Expect(2) = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2

Query: 209 GLPGPPGPECIHRTPLERGQRNP 141
GLPGPPG P ++G+ P
Sbjct: 1390 GLPGPPGVPGFDGAPGQKGETGP 1412



Score = 23.1 bits (48), Expect(2) = 3.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2

Query: 212 QGLPGPPGP 186
QG PGPPGP
Sbjct: 1343 QGPPGPPGP 1351


>sp|Q29442|CO4A4_BOVIN Collagen alpha-4(IV) chain (Fragment) OS=Bos
taurus GN=COL4A4 PE=1 SV=1
Length = 453

Score = 24.6 bits (52), Expect(2) = 3.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2

Query: 233 ELGLNIHQGLPGPPGP 186
+ GL GLPGPPGP
Sbjct: 56 DCGLPGPPGLPGPPGP 71



Score = 24.3 bits (51), Expect(2) = 3.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2

Query: 212 QGLPGPPGPECIHRTPLERGQRNP 141
+GLPGPPG P RG+ P
Sbjct: 108 KGLPGPPGRRGPLGPPGSRGEPGP 131


>sp|Q28247|CO4A5_CANFA Collagen alpha-5(IV) chain OS=Canis
familiaris GN=COL4A5 PE=2 SV=2
Length = 1691

Score = 24.3 bits (51), Expect(2) = 3.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2

Query: 233 ELGLNIHQGLPGPPG 189
E+GL GLPGPPG
Sbjct: 676 EVGLPGDPGLPGPPG 690



Score = 24.3 bits (51), Expect(2) = 3.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2

Query: 209 GLPGPPGPE 183
GLPGPPGP+
Sbjct: 707 GLPGPPGPK 715


>sp|P12106|CO9A1_CHICK Collagen alpha-1(IX) chain OS=Gallus gallus
GN=COL9A1 PE=1 SV=4
Length = 920

Score = 25.8 bits (55), Expect(2) = 4.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2

Query: 218 IHQGLPGPPGP 186
I +GLPGPPGP
Sbjct: 264 IERGLPGPPGP 274



Score = 22.7 bits (47), Expect(2) = 4.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2

Query: 209 GLPGPPGPECIHRTPLERGQRNP 141
G PGPPG I ERG P
Sbjct: 276 GPPGPPGVPGIDGIDGERGPNGP 298


>sp|O76368|COL99_CAEEL Putative cuticle collagen 99
OS=Caenorhabditis elegans GN=col-99 PE=1 SV=2
Length = 627

Score = 30.8 bits (68), Expect = 4.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2

Query: 242 ISQELGLNIHQGLPGPPGPECIHRTPLERGQRNP 141
IS+ G N+ G PGPPGP H G+R P
Sbjct: 408 ISELRGKNVIPGPPGPPGPRGHHGPVGPSGERGP 441


>sp|Q9UMD9|COHA1_HUMAN Collagen alpha-1(XVII) chain OS=Homo sapiens
GN=COL17A1 PE=1 SV=3
Length = 1497

Score = 24.6 bits (52), Expect(2) = 5.1
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2

Query: 212 QGLPGPPGP 186
+GLPGPPGP
Sbjct: 884 EGLPGPPGP 892



Score = 23.5 bits (49), Expect(2) = 5.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2

Query: 209 GLPGPPGPECIHRTPLERGQR 147
G PGPPGP+ P RG +
Sbjct: 909 GPPGPPGPKGDQGPPGPRGHQ 929


tr_hit_id Q111U4
Definition tr|Q111U4|Q111U4_TRIEI Putative uncharacterized protein OS=Trichodesmium erythraeum (strain IMS101)
Align length 72
Score (bit) 38.9
E-value 0.19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915621|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_G03.
(558 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q111U4|Q111U4_TRIEI Putative uncharacterized protein OS=Trich... 39 0.19
tr|Q9N178|Q9N178_PIG Type X collagen OS=Sus scrofa GN=COL10A1 PE... 27 2.5
tr|A7GJR8|A7GJR8_CLOBL ABC transporter CbaT OS=Clostridium botul... 33 8.1
tr|B1Q7Y5|B1Q7Y5_CLOBO Lactococcin-G-processing and transport AT... 33 8.1

>tr|Q111U4|Q111U4_TRIEI Putative uncharacterized protein
OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_2525
PE=4 SV=1
Length = 314

Score = 38.9 bits (89), Expect = 0.19
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = -1

Query: 432 NKYIVQLLTIPVYVSALRRELKAIIPLQLYKLFKCRTNKPRAQANKSAVQIPLQLTSYLN 253
+K +LL +P+ + +++ +PL L L T+K + + + V + L+ T+Y+
Sbjct: 203 HKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTDKGKLDSWEVMVSMQLEKTNYVR 262

Query: 252 VKINQPRAWVKH 217
++ PRAW H
Sbjct: 263 ATMSSPRAWTIH 274


>tr|Q9N178|Q9N178_PIG Type X collagen OS=Sus scrofa GN=COL10A1 PE=4
SV=1
Length = 675

Score = 26.9 bits (58), Expect(2) = 2.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2

Query: 239 SQELGLNIHQGLPGPPGP 186
S+ + L QG+PGPPGP
Sbjct: 51 SKGISLRGEQGIPGPPGP 68



Score = 26.6 bits (57), Expect(2) = 2.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2

Query: 209 GLPGPPGPECIHRTPLERGQRNPANK 132
GLPGPPGP + L Q P +
Sbjct: 96 GLPGPPGPSATGKPGLPGPQGKPGER 121


>tr|A7GJR8|A7GJR8_CLOBL ABC transporter CbaT OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=CLI_A0024 PE=3 SV=1
Length = 740

Score = 33.5 bits (75), Expect = 8.1
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = -1

Query: 450 ISGAQINKYIVQLLTIP----VYVSALRRELKAIIPLQLYKLFKCRTNKPRAQANKSAVQ 283
ISGA + I L+ I +Y S +IP+ LY + NKP + N+S ++
Sbjct: 279 ISGATLTMMIDSLMVIIGGIFLYTSNSLLFGITVIPIVLYIIIVWAFNKPLEEVNRSVME 338

Query: 282 IPLQLTSYLNVKIN 241
+LTSYL +N
Sbjct: 339 DNAKLTSYLVESLN 352


>tr|B1Q7Y5|B1Q7Y5_CLOBO Lactococcin-G-processing and transport
ATP-binding protein LagD OS=Clostridium botulinum NCTC
2916 GN=CBN_1292 PE=4 SV=1
Length = 740

Score = 33.5 bits (75), Expect = 8.1
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -1

Query: 450 ISGA----QINKYIVQLLTIPVYVSALRRELKAIIPLQLYKLFKCRTNKPRAQANKSAVQ 283
ISGA I+ ++V + I +Y S IIP+ LY + NKP + N+S ++
Sbjct: 279 ISGATLTMMIDSFMVIIGGIFLYTSNSLLFGITIIPIVLYIIIVWAFNKPLEEVNRSVME 338

Query: 282 IPLQLTSYLNVKIN 241
+LTSYL +N
Sbjct: 339 DNAKLTSYLVESLN 352