BP915621 |
Clone id |
YMU001_000073_G03 |
Library |
YMU01 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000073_G03. |
Accession |
BP915621 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AATTAATTCGATAGGTACAAGGAAGCGGAGCCCTGATACACAAGAGTGAAATTATACAGA ACCGAGTTGATTCATGAGAGTAAATGCATATGCTTGCATGGTGAGCGTGAATTTGCTCAT TGCATGGCAAATTTGTTTGCTGGGTTTCTTTGTCCCCGCTCTAGGGGTGTTCGATGTATG CACTCTGGTCCGGGTGGTCCAGGTAAACCCTGATGAATGTTTAACCCAAGCTCTTGGCTG ATTTATTTTGACATTCAAATAGCTGGTGAGCTGAAGGGGAATTTGCACGGCAGATTTGTT TGCTTGAGCTCTTGGCTTATTTGTCCGACATTTGAATAGCTTGTATAGTTGAAGTGGGAT TATAGCCTTGAGTTCCCTTCTGAGTGCAGAGACATACACTGGGATGGTGAGCAATTGTAC GATATACTTATTTATTTGAGCTCCACTGATTTTTATGCCATTGGCTAGAGCCTTGATTAT GGTGGATTTGGCCATTGGTAAGCAAAAGGGAAAGCTGTGATTATGGAAACTCTTTGTTTT GACCAGTGCATCAGCATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P23206 |
Definition |
sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus |
Align length |
15 |
Score (bit) |
25.4 |
E-value |
1.5 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915621|Adiantum capillus-veneris mRNA, clone: YMU001_000073_G03. (558 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus GN... 25 1.5 sp|Q306W8|POLN_EEEV8 Non-structural polyprotein OS=Eastern equin... 32 2.1 sp|Q306W6|POLN_EEEV1 Non-structural polyprotein OS=Eastern equin... 32 2.7 sp|A0MSJ1|CORA1_DANRE Collagen alpha-1(XXVII) chain OS=Danio rer... 32 2.7 sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus... 26 3.1 sp|Q29442|CO4A4_BOVIN Collagen alpha-4(IV) chain (Fragment) OS=B... 25 3.3 sp|Q28247|CO4A5_CANFA Collagen alpha-5(IV) chain OS=Canis famili... 24 3.9 sp|P12106|CO9A1_CHICK Collagen alpha-1(IX) chain OS=Gallus gallu... 26 4.1 sp|O76368|COL99_CAEEL Putative cuticle collagen 99 OS=Caenorhabd... 31 4.7 sp|Q9UMD9|COHA1_HUMAN Collagen alpha-1(XVII) chain OS=Homo sapie... 25 5.1 sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain OS=Bos taurus... 25 5.1 sp|Q96P44|COLA1_HUMAN Collagen alpha-1(XXI) chain OS=Homo sapien... 27 5.2 sp|P02462|CO4A1_HUMAN Collagen alpha-1(IV) chain OS=Homo sapiens... 26 6.5 sp|Q90584|COHA1_CHICK Collagen alpha-1(XVII) chain OS=Gallus gal... 25 6.5 sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapien... 30 8.0 sp|P04258|CO3A1_BOVIN Collagen alpha-1(III) chain OS=Bos taurus ... 30 8.0 sp|Q9R1N9|CODA1_MOUSE Collagen alpha-1(XIII) chain OS=Mus muscul... 24 8.8
>sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus GN=COL10A1 PE=2 SV=1 Length = 674
Score = 25.4 bits (54), Expect(2) = 1.5 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2
Query: 230 LGLNIHQGLPGPPGP 186 + L QG+PGPPGP Sbjct: 53 VSLRGEQGIPGPPGP 67
Score = 24.6 bits (52), Expect(2) = 1.5 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 8/31 (25%) Frame = -2
Query: 209 GLPGPPGPECIHRTPL--------ERGQRNP 141 GLPGPPGP + L ERG P Sbjct: 95 GLPGPPGPSATGKPGLPGLPGKQGERGLNGP 125
>sp|Q306W8|POLN_EEEV8 Non-structural polyprotein OS=Eastern equine encephalitis virus (strain PE-3.0815) PE=2 SV=2 Length = 2473
Score = 32.0 bits (71), Expect = 2.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2
Query: 194 PGPECIHRTPLERGQRNPANKFAMQ*ANSRSPCKHMH 84 PGP+C ++ L+ G + K+ + N R+P KH H Sbjct: 1186 PGPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHH 1222
>sp|Q306W6|POLN_EEEV1 Non-structural polyprotein OS=Eastern equine encephalitis virus (strain PE-0.0155) PE=2 SV=2 Length = 2470
Score = 31.6 bits (70), Expect = 2.7 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2
Query: 194 PGPECIHRTPLERGQRNPANKFAMQ*ANSRSPCKHMH 84 PGP+C ++ L+ G + K+ + N R+P KH H Sbjct: 1186 PGPQCTYKADLDLGIPSMIGKYDIIFVNVRTPYKHHH 1222
>sp|A0MSJ1|CORA1_DANRE Collagen alpha-1(XXVII) chain OS=Danio rerio GN=col27a1 PE=2 SV=1 Length = 1658
Score = 31.6 bits (70), Expect = 2.7 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -2
Query: 227 GLNIHQGLPGPPGPECIHRTPLERGQRNPA 138 GL GLPGPPGP P +RG R P+ Sbjct: 427 GLKGEPGLPGPPGPPGQPGLPGKRGPRGPS 456
>sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus GN=Col4a1 PE=2 SV=4 Length = 1669
Score = 25.8 bits (55), Expect(2) = 3.1 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2
Query: 209 GLPGPPGPECIHRTPLERGQRNP 141 GLPGPPG P ++G+ P Sbjct: 1390 GLPGPPGVPGFDGAPGQKGETGP 1412
Score = 23.1 bits (48), Expect(2) = 3.1 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = -2
Query: 212 QGLPGPPGP 186 QG PGPPGP Sbjct: 1343 QGPPGPPGP 1351
>sp|Q29442|CO4A4_BOVIN Collagen alpha-4(IV) chain (Fragment) OS=Bos taurus GN=COL4A4 PE=1 SV=1 Length = 453
Score = 24.6 bits (52), Expect(2) = 3.3 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -2
Query: 233 ELGLNIHQGLPGPPGP 186 + GL GLPGPPGP Sbjct: 56 DCGLPGPPGLPGPPGP 71
Score = 24.3 bits (51), Expect(2) = 3.3 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2
Query: 212 QGLPGPPGPECIHRTPLERGQRNP 141 +GLPGPPG P RG+ P Sbjct: 108 KGLPGPPGRRGPLGPPGSRGEPGP 131
>sp|Q28247|CO4A5_CANFA Collagen alpha-5(IV) chain OS=Canis familiaris GN=COL4A5 PE=2 SV=2 Length = 1691
Score = 24.3 bits (51), Expect(2) = 3.9 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -2
Query: 233 ELGLNIHQGLPGPPG 189 E+GL GLPGPPG Sbjct: 676 EVGLPGDPGLPGPPG 690
Score = 24.3 bits (51), Expect(2) = 3.9 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = -2
Query: 209 GLPGPPGPE 183 GLPGPPGP+ Sbjct: 707 GLPGPPGPK 715
>sp|P12106|CO9A1_CHICK Collagen alpha-1(IX) chain OS=Gallus gallus GN=COL9A1 PE=1 SV=4 Length = 920
Score = 25.8 bits (55), Expect(2) = 4.1 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -2
Query: 218 IHQGLPGPPGP 186 I +GLPGPPGP Sbjct: 264 IERGLPGPPGP 274
Score = 22.7 bits (47), Expect(2) = 4.1 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = -2
Query: 209 GLPGPPGPECIHRTPLERGQRNP 141 G PGPPG I ERG P Sbjct: 276 GPPGPPGVPGIDGIDGERGPNGP 298
>sp|O76368|COL99_CAEEL Putative cuticle collagen 99 OS=Caenorhabditis elegans GN=col-99 PE=1 SV=2 Length = 627
Score = 30.8 bits (68), Expect = 4.7 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2
Query: 242 ISQELGLNIHQGLPGPPGPECIHRTPLERGQRNP 141 IS+ G N+ G PGPPGP H G+R P Sbjct: 408 ISELRGKNVIPGPPGPPGPRGHHGPVGPSGERGP 441
>sp|Q9UMD9|COHA1_HUMAN Collagen alpha-1(XVII) chain OS=Homo sapiens GN=COL17A1 PE=1 SV=3 Length = 1497
Score = 24.6 bits (52), Expect(2) = 5.1 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = -2
Query: 212 QGLPGPPGP 186 +GLPGPPGP Sbjct: 884 EGLPGPPGP 892
Score = 23.5 bits (49), Expect(2) = 5.1 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -2
Query: 209 GLPGPPGPECIHRTPLERGQR 147 G PGPPGP+ P RG + Sbjct: 909 GPPGPPGPKGDQGPPGPRGHQ 929
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q111U4 |
Definition |
tr|Q111U4|Q111U4_TRIEI Putative uncharacterized protein OS=Trichodesmium erythraeum (strain IMS101) |
Align length |
72 |
Score (bit) |
38.9 |
E-value |
0.19 |
Report |
|