BP915622 |
Clone id |
YMU001_000073_G04 |
Library |
YMU01 |
Length |
545 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000073_G04. |
Accession |
BP915622 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL513Contig1 |
Sequence |
AACGTCCTGAAGGCTCCTCTGCAGCTGAATTAGCACTTCTCTCCTTCATCCTCTGACAGA TCTTTAAAGTTGTGGAAATCATATGGCTGAGGCAGTGGCTTTGTCCATGGGTCATTGTCT TGATACCAGTTCCCTACATGGTGCTGATGTTGGGAGGCAGAAACTGACAAACAGTTTGAG GAGTGGATTTCTGGGTTCCAAACCAACAAAGTCTCGAGCATTTTTACGCATTTCACCTGT GAAACACCCTGGAAGGCAGCAGTCATGCAACTTTCGGTGCTCAGTTATTCAAAAAAGCCA GGTGCAAGCGCCTGACTCAGTAACCATCACTGCAGACAATAAAAGAGTGGAGTGTTATGG AGTTTTCTGTGTTATGTATGACTTGAATCAGGAGGAGCAGCCCAAAACCTGGAAGAAGCT ACTGAGAATTGCAGTTTCTGGGGCTGCTGGAACAATCTCCAACCATTTGCTGTTTAAGAT TGCCTCTGGAGAAGTATTTGGACCAGATCAGCCTGTGGCGCTCAATCTTCTAGGCTCCGA GAGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q05145 |
Definition |
sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum |
Align length |
90 |
Score (bit) |
125.0 |
E-value |
1.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915622|Adiantum capillus-veneris mRNA, clone: YMU001_000073_G04. (545 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic ... 125 1e-28 sp|P46489|MDHP_FLABI Malate dehydrogenase [NADP], chloroplastic ... 120 3e-27 sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplastic OS... 119 7e-27 sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic ... 119 9e-27 sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic ... 119 1e-26 sp|P17606|MDHP1_SORBI Malate dehydrogenase [NADP] 1, chloroplast... 116 6e-26 sp|P15719|MDHP_MAIZE Malate dehydrogenase [NADP], chloroplastic ... 115 1e-25 sp|P37229|MDHP2_SORBI Malate dehydrogenase [NADP] 2, chloroplast... 110 6e-24 sp|Q9PE17|MDH_XYLFA Malate dehydrogenase OS=Xylella fastidiosa G... 52 2e-06 sp|A1WR02|MDH_VEREI Malate dehydrogenase OS=Verminephrobacter ei... 52 2e-06 sp|Q126N9|MDH_POLSJ Malate dehydrogenase OS=Polaromonas sp. (str... 52 2e-06 sp|A1VRQ1|MDH_POLNA Malate dehydrogenase OS=Polaromonas naphthal... 52 2e-06 sp|A2SHT9|MDH_METPP Malate dehydrogenase OS=Methylibium petrolei... 52 2e-06 sp|A1W9K7|MDH_ACISJ Malate dehydrogenase OS=Acidovorax sp. (stra... 52 2e-06 sp|A1TP96|MDH_ACIAC Malate dehydrogenase OS=Acidovorax avenae su... 52 2e-06 sp|Q87E35|MDH_XYLFT Malate dehydrogenase OS=Xylella fastidiosa (... 51 3e-06 sp|A5WGM2|MDH_PSYWF Malate dehydrogenase OS=Psychrobacter sp. (s... 51 3e-06 sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter cryoha... 51 3e-06 sp|Q4FQU7|MDH_PSYA2 Malate dehydrogenase OS=Psychrobacter arctic... 51 3e-06 sp|Q7VW97|MDH_BORPE Malate dehydrogenase OS=Bordetella pertussis... 51 3e-06 sp|Q7W5Q8|MDH_BORPA Malate dehydrogenase OS=Bordetella parapertu... 51 3e-06 sp|Q7WD94|MDH_BORBR Malate dehydrogenase OS=Bordetella bronchise... 51 3e-06 sp|Q21XH1|MDH1_RHOFD Malate dehydrogenase 1 OS=Rhodoferax ferrir... 51 4e-06 sp|A0LFF8|MDH_SYNFM Malate dehydrogenase OS=Syntrophobacter fuma... 50 5e-06 sp|Q2L068|MDH_BORA1 Malate dehydrogenase OS=Bordetella avium (st... 50 5e-06 sp|A5G320|MDH_ACICJ Malate dehydrogenase OS=Acidiphilium cryptum... 50 5e-06 sp|A3M928|MDH_ACIBT Malate dehydrogenase OS=Acinetobacter bauman... 50 5e-06 sp|Q6F7X1|MDH_ACIAD Malate dehydrogenase OS=Acinetobacter sp. (s... 50 5e-06 sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium viol... 50 7e-06 sp|Q0VQ52|MDH_ALCBS Malate dehydrogenase OS=Alcanivorax borkumen... 50 7e-06
>sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1 Length = 441
Score = 125 bits (314), Expect = 1e-28 Identities = 61/90 (67%), Positives = 71/90 (78%) Frame = +2
Query: 275 RCSVIQKSQVQAPDSVTITADNKRVECYGVFCVMYDLNQEEQPKTWKKLLRIAVSGAAGT 454 RCSV +QVQAP +V + ECYG+FC+ YDL EE+ KTWKK++ IAVSGAAG Sbjct: 50 RCSVAP-NQVQAPVAVPAEGQTGKPECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGM 108
Query: 455 ISNHLLFKIASGEVFGPDQPVALNLLGSER 544 ISNHLLFK+ASGEVFGPDQP+AL LLGSER Sbjct: 109 ISNHLLFKLASGEVFGPDQPIALKLLGSER 138
>sp|P46489|MDHP_FLABI Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1 Length = 453
Score = 120 bits (302), Expect = 3e-27 Identities = 57/100 (57%), Positives = 71/100 (71%) Frame = +2
Query: 245 HPGRQQSCNFRCSVIQKSQVQAPDSVTITADNKRVECYGVFCVMYDLNQEEQPKTWKKLL 424 H + RCSV Q+QAP ++ EC+GVFC+ YDL EE+ K+WKK++ Sbjct: 57 HQRLSSPASIRCSVTSSDQIQAP-----LPAKQKPECFGVFCLTYDLKAEEETKSWKKII 111
Query: 425 RIAVSGAAGTISNHLLFKIASGEVFGPDQPVALNLLGSER 544 +AVSGAAG ISNHLLFK+ASGEVFGPDQP++L LLGSER Sbjct: 112 NVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSER 151
>sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2 Length = 441
Score = 119 bits (299), Expect = 7e-27 Identities = 62/97 (63%), Positives = 71/97 (73%) Frame = +2
Query: 254 RQQSCNFRCSVIQKSQVQAPDSVTITADNKRVECYGVFCVMYDLNQEEQPKTWKKLLRIA 433 R Q CSV +QVQ P + T K +CYGVFC+ YDL EE+ K+WKKL+ IA Sbjct: 45 RTQHARISCSVAP-NQVQVPAAQTQDPKGKP-DCYGVFCLTYDLKAEEETKSWKKLINIA 102
Query: 434 VSGAAGTISNHLLFKIASGEVFGPDQPVALNLLGSER 544 VSGAAG ISNHLLFK+ASGEVFGPDQP+AL LLGSER Sbjct: 103 VSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER 139
>sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1 Length = 435
Score = 119 bits (298), Expect = 9e-27 Identities = 55/89 (61%), Positives = 70/89 (78%) Frame = +2
Query: 278 CSVIQKSQVQAPDSVTITADNKRVECYGVFCVMYDLNQEEQPKTWKKLLRIAVSGAAGTI 457 C + +QVQ P +V A + + ECYGVFC YDL +EE+ ++WKK++ IA+SGAAGTI Sbjct: 44 CCSLAPNQVQTPVAVPTGAQSIKPECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTI 103
Query: 458 SNHLLFKIASGEVFGPDQPVALNLLGSER 544 SNHLLFK+ASG VFGPDQP+AL LLGSE+ Sbjct: 104 SNHLLFKLASGVVFGPDQPIALKLLGSEK 132
>sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1 Length = 437
Score = 119 bits (297), Expect = 1e-26 Identities = 61/97 (62%), Positives = 72/97 (74%) Frame = +2
Query: 254 RQQSCNFRCSVIQKSQVQAPDSVTITADNKRVECYGVFCVMYDLNQEEQPKTWKKLLRIA 433 R Q CSV +QVQAP +V + +CYGVFC+ YDL EE+ K+WKKL+ IA Sbjct: 41 RTQHARISCSVAP-NQVQAP-AVQTQDPKSKPDCYGVFCLTYDLKAEEETKSWKKLITIA 98
Query: 434 VSGAAGTISNHLLFKIASGEVFGPDQPVALNLLGSER 544 VSGAAG ISNHLLFK+ASGEVFGP+QP+AL LLGSER Sbjct: 99 VSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSER 135
>sp|P17606|MDHP1_SORBI Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1 Length = 429
Score = 116 bits (291), Expect = 6e-26 Identities = 63/107 (58%), Positives = 73/107 (68%), Gaps = 1/107 (0%) Frame = +2
Query: 227 RISPVKHPGRQQSCNFRCSVIQKSQVQAPDSV-TITADNKRVECYGVFCVMYDLNQEEQP 403 R + + P R RCSV QVQ D V T A R +C+GVFC YDL E++ Sbjct: 23 RSAQLHRPRRALLATVRCSVDAAKQVQ--DGVATAEAPATRKDCFGVFCTTYDLKAEDKT 80
Query: 404 KTWKKLLRIAVSGAAGTISNHLLFKIASGEVFGPDQPVALNLLGSER 544 K+WKKL+ IAVSGAAG ISNHLLFK+ASGEVFG DQP+AL LLGSER Sbjct: 81 KSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER 127
>sp|P15719|MDHP_MAIZE Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1 Length = 432
Score = 115 bits (288), Expect = 1e-25 Identities = 59/108 (54%), Positives = 71/108 (65%), Gaps = 2/108 (1%) Frame = +2
Query: 227 RISPVKHPGRQQSCNFRCSVIQKSQVQ--APDSVTITADNKRVECYGVFCVMYDLNQEEQ 400 R + + P R RCSV Q Q +V A R EC+GVFC YDL E++ Sbjct: 23 RSAQPRRPRRAPLATVRCSVDATKQAQDGVATAVATEAPASRKECFGVFCTTYDLKAEDK 82
Query: 401 PKTWKKLLRIAVSGAAGTISNHLLFKIASGEVFGPDQPVALNLLGSER 544 K+W+KL+ +AVSGAAG ISNHLLFK+ASGEVFG DQP+AL LLGSER Sbjct: 83 TKSWRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER 130
>sp|P37229|MDHP2_SORBI Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1 Length = 432
Score = 110 bits (274), Expect = 6e-24 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 3/100 (3%) Frame = +2
Query: 254 RQQSCNFRCSVIQKSQVQAPDSVTITADNKRV---ECYGVFCVMYDLNQEEQPKTWKKLL 424 R + RCSV+ ++ Q D V EC+GVFC +YDL E++ K+WKKL+ Sbjct: 32 RPRLATVRCSVVDAAK-QVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLV 90
Query: 425 RIAVSGAAGTISNHLLFKIASGEVFGPDQPVALNLLGSER 544 IAVSGAAG ISNHLLFK+ASGEVFG DQP+AL LLGSER Sbjct: 91 TIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER 130
>sp|Q9PE17|MDH_XYLFA Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2 Length = 328
Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/40 (60%), Positives = 32/40 (80%) Frame = +2
Query: 413 KKLLRIAVSGAAGTISNHLLFKIASGEVFGPDQPVALNLL 532 K L+R+AV+GAAG I LLF+IA+GE+FG D+PV L +L Sbjct: 2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQML 41
>sp|A1WR02|MDH_VEREI Malate dehydrogenase OS=Verminephrobacter eiseniae (strain EF01-2) GN=mdh PE=3 SV=1 Length = 328
Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/40 (65%), Positives = 31/40 (77%) Frame = +2
Query: 413 KKLLRIAVSGAAGTISNHLLFKIASGEVFGPDQPVALNLL 532 KK +R+AV+GAAG I LLF+IASGE+ G DQPV L LL Sbjct: 3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLL 42
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9XGF9 |
Definition |
tr|Q9XGF9|Q9XGF9_SELMA NADP-dependent malate dehydrogenase OS=Selaginella martensii |
Align length |
130 |
Score (bit) |
134.0 |
E-value |
4.0e-30 |
Report |
|