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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915626
Clone id YMU001_000073_G09
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTGGAGAGTGAGATGAATAGGGCTGCCAGTGCATCCTTGAAGGTGAGTGCAGGCTAGCA
AGGATGACACTCCATCTAGCAAGGGTGTATGGAGAAACAGCCACACGAACAAGAGTCCAC
CAGCCTTTTTAATATAGTAGTAGATAGTAGATGGTCTTGTTATCTACATAAATCGTCTTC
CCAAGACTAGTAGTTTATTGGAAAATGATAGGGTTGTGTTCTTTTGAAAATTTGAGGTGG
TGGTGGGAAAATAATGCATCAAGAAAGATAAGATCAAAGGGAGACTCATGAAAGTATTGG
TATGGACCATGGTGTATAGGAGTCAAACTTCAAACTATAAACAATTTGTGCTCTTTTGTA
GGTGACACATGTGGAGGAAGAAGTGCTAGGCACACCTCTTTGAATAAGGTGATGAGCTAC
ATGTAGTC
■■Homology search results ■■ -
sp_hit_id A4RKC3
Definition sp|A4RKC3|DCL1_MAGGR Dicer-like protein 1 OS=Magnaporthe grisea
Align length 43
Score (bit) 32.0
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915626|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_G09.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4RKC3|DCL1_MAGGR Dicer-like protein 1 OS=Magnaporthe grisea ...    32   1.1  
sp|Q35099|NU5M_METSE NADH-ubiquinone oxidoreductase chain 5 OS=M...    31   1.8  
sp|Q9D4P7|GSTT4_MOUSE Glutathione S-transferase theta-4 OS=Mus m...    31   1.8  
sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3      31   2.4  
sp|Q55429|NU5C_SYNY3 NAD(P)H-quinone oxidoreductase chain 5 OS=S...    30   3.1  
sp|Q4V8E6|GSTT4_RAT Glutathione S-transferase theta-4 OS=Rattus ...    30   5.3  
sp|B1X491|NU5C1_PAUCH NAD(P)H-quinone oxidoreductase subunit 5, ...    29   7.0  
sp|A8MPT4|GSTT4_HUMAN Glutathione S-transferase theta-4 OS=Homo ...    29   7.0  
sp|P31971|NU5C_SYNP2 NAD(P)H-quinone oxidoreductase chain 5 OS=S...    29   9.1  

>sp|A4RKC3|DCL1_MAGGR Dicer-like protein 1 OS=Magnaporthe grisea
            GN=DCL1 PE=3 SV=2
          Length = 1591

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 202  KMIGLCSFENLRWWWENNASRKIRSKGDS*KYWYGPWCIGVKL 330
            +M+ +C+   L W  E+N    IRSK  + + WY P   G+KL
Sbjct: 1116 RMLDICNKNLLNWALESNLQEHIRSKSFNRRTWYPP---GLKL 1155


>sp|Q35099|NU5M_METSE NADH-ubiquinone oxidoreductase chain 5
           OS=Metridium senile GN=ND5 PE=3 SV=1
          Length = 600

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 151 MVLLST*IVFPRLVVYWKMIGLCSFENLRWW 243
           M+LL T   +P+L + W+ +GLCS+  + +W
Sbjct: 124 MILLVTSDNYPQLFIGWEGVGLCSYLLINFW 154


>sp|Q9D4P7|GSTT4_MOUSE Glutathione S-transferase theta-4 OS=Mus
           musculus GN=Gstt4 PE=2 SV=1
          Length = 240

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 281 PFDLIFLDALFSHHHLKFSKEHNPIIFQ*TTSLGKTIYVDNKTIYYLL 138
           PFD  F+D L  HHH K   E NP+    +   GK I  ++  I + L
Sbjct: 27  PFDFQFVDLLKGHHHSKEYIEINPLRKLPSLKDGKFILSESVAILFYL 74


>sp|P27708|PYR1_HUMAN CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3
          Length = 2225

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 383  LLPPHVSPTKEHKLFIV*SLTPIHHGPYQYFHESPFDLIFLDALFSHH-----HLKFSKE 219
            +LP  ++   E +L +   L  +HH P + FH  P +  +++    H      H+ FSK 
Sbjct: 1710 MLPLLLTAVSEGRLSLDDLLQRLHHNPRRIFHLPPQEDTYVEVDLEHEWTIPSHMPFSKA 1769

Query: 218  H 216
            H
Sbjct: 1770 H 1770


>sp|Q55429|NU5C_SYNY3 NAD(P)H-quinone oxidoreductase chain 5
           OS=Synechocystis sp. (strain PCC 6803) GN=ndhF PE=3 SV=1
          Length = 681

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 9/33 (27%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +1

Query: 172 IVFPRLV---VYWKMIGLCSFENLRWWWENNAS 261
           ++ P LV   ++W+++G+CS+  + +W++  A+
Sbjct: 139 VISPNLVQVYIFWELVGMCSYLLIGFWYDRKAA 171


>sp|Q4V8E6|GSTT4_RAT Glutathione S-transferase theta-4 OS=Rattus
           norvegicus GN=Gstt4 PE=2 SV=1
          Length = 240

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 281 PFDLIFLDALFSHHHLKFSKEHNPI 207
           PFD  F+D L  HHH K   E NP+
Sbjct: 27  PFDFQFVDLLKGHHHSKEYIEINPL 51


>sp|B1X491|NU5C1_PAUCH NAD(P)H-quinone oxidoreductase subunit 5,
           chromatophore 1 OS=Paulinella chromatophora GN=ndhF1
           PE=3 SV=1
          Length = 666

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +1

Query: 187 LVVYWKMIGLCSFENLRWWWEN----NASRK 267
           + V+W+++G+CS+  + +W+E     NA++K
Sbjct: 148 IYVFWELVGMCSYLLIGFWYEREDAANAAQK 178


>sp|A8MPT4|GSTT4_HUMAN Glutathione S-transferase theta-4 OS=Homo
           sapiens GN=GSTT4 PE=3 SV=2
          Length = 241

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 290 HESPFDLIFLDALFSHHHLKFSKEHNPIIFQ*TTSLGKTIYVDNKTIYYLL 138
           ++ PF+L  +D +  HHH K   + NP+    +   GK I  ++  I Y L
Sbjct: 24  NDIPFELRIVDLIKGHHHSKEYIDINPLRKLPSLKDGKFILSESAAILYYL 74


>sp|P31971|NU5C_SYNP2 NAD(P)H-quinone oxidoreductase chain 5
           OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
           PR-6) GN=ndhF PE=3 SV=2
          Length = 664

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 6/26 (23%), Positives = 20/26 (76%)
 Frame = +1

Query: 184 RLVVYWKMIGLCSFENLRWWWENNAS 261
           ++ ++W+++G+CS+  + +W++  A+
Sbjct: 146 QVYIFWELVGMCSYLLIGFWYDRKAA 171
tr_hit_id Q2JS65
Definition tr|Q2JS65|Q2JS65_SYNJA NADH-ubiquinone/plastoquinone oxidoreductase, F subunit OS=Synechococcus sp. (strain JA-3-3Ab)
Align length 39
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915626|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_G09.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2JS65|Q2JS65_SYNJA NADH-ubiquinone/plastoquinone oxidoreduct...    33   5.5  
tr|Q197J6|Q197J6_RICFL NADH-ubiquinone oxidoreductase chain 5 OS...    33   5.5  

>tr|Q2JS65|Q2JS65_SYNJA NADH-ubiquinone/plastoquinone
           oxidoreductase, F subunit OS=Synechococcus sp. (strain
           JA-3-3Ab) GN=CYA_2391 PE=4 SV=1
          Length = 716

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 172 IVFPRLV---VYWKMIGLCSFENLRWWWENNASRKIRSK 279
           +V P LV   V+W+++G+CS+  + +W+E  A+ +   K
Sbjct: 139 VVSPNLVQIYVFWELVGMCSYLLIGFWYERQAAAEAAQK 177


>tr|Q197J6|Q197J6_RICFL NADH-ubiquinone oxidoreductase chain 5
           OS=Ricordea florida GN=nad5 PE=3 SV=1
          Length = 612

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 151 MVLLST*IVFPRLVVYWKMIGLCSFENLRWWW 246
           M++L T   +P+L + W+ +GLCS+  + +WW
Sbjct: 124 MMVLVTSDNYPQLFIGWEGVGLCSYLLINFWW 155