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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915635
Clone id YMU001_000073_H07
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000073_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCAGATTGTACTGAGGCTCCTGGGAGAAACGACATATGGAGGATCAATGGGGCTCACTG
AGGGAGTCTCCATTTGTGATAGGGTTGGTTGGTTGGACTTTCCCGTATCCAAGAATCTCA
TTAGGCCTGTTGAAGGCATGTTGATACCTATGTTCTGTCTTTCTAACTCGACAATCCTAT
GGAGGACATCATAGACTTTCTGTAGTTGCTCATCTATGCTAGTAGCACCCGATGTGGATT
GTAGAACATCTAACTAACCCACATGATAGGTGTGTCCTGTGTACCGATCAGTCAAAGCGT
CTGCTTGTAAGTCATACTCCCAATTTTCGTTTAGGAATATACCATCTAGGCCTGGCGTGT
CGGAGGTTGCCCTCGAAGTGGAAGCATTATTGCTCCTCATCGCTTGCCCCTCCGTGACTG
CTACCTTGGGAGCACTCGGTTGCTCGGCTT
■■Homology search results ■■ -
sp_hit_id Q974N4
Definition sp|Q974N4|SYL1_SULTO Leucyl-tRNA synthetase 1 OS=Sulfolobus tokodaii
Align length 33
Score (bit) 28.9
E-value 9.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915635|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_H07.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q974N4|SYL1_SULTO Leucyl-tRNA synthetase 1 OS=Sulfolobus toko...    29   9.6  
sp|Q1E024|MED5_COCIM Mediator of RNA polymerase II transcription...    29   9.6  

>sp|Q974N4|SYL1_SULTO Leucyl-tRNA synthetase 1 OS=Sulfolobus
           tokodaii GN=leuS1 PE=3 SV=1
          Length = 945

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/33 (36%), Positives = 25/33 (75%)
 Frame = -3

Query: 234 DVLQSTSGATSIDEQLQKVYDVLHRIVELERQN 136
           D+  +++ A SI EQL+K++D++ +++E+E  N
Sbjct: 661 DIEFNSNIAKSIAEQLKKIHDLISKLLEIEGVN 693


>sp|Q1E024|MED5_COCIM Mediator of RNA polymerase II transcription
           subunit 5 OS=Coccidioides immitis GN=NUT1 PE=3 SV=2
          Length = 1052

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 153 ELERQNIGINMPSTGLMRFLDTGKSNQ 73
           +L   ++GIN P + ++R LDTG S+Q
Sbjct: 571 DLTPLDLGINKPDSFILRLLDTGASSQ 597
tr_hit_id A2EC08
Definition tr|A2EC08|A2EC08_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 68
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915635|Adiantum capillus-veneris mRNA, clone:
YMU001_000073_H07.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2EC08|A2EC08_TRIVA Putative uncharacterized protein OS=Trich...    36   0.84 
tr|Q2GLZ4|Q2GLZ4_CHAGB Putative uncharacterized protein OS=Chaet...    34   4.2  
tr|Q30S72|Q30S72_SULDN Putative uncharacterized protein OS=Sulfu...    33   5.4  
tr|Q1ICL8|Q1ICL8_PSEE4 Putative bifunctional serine/threonine-pr...    33   5.4  
tr|A7PKZ1|A7PKZ1_VITVI Chromosome chr7 scaffold_20, whole genome...    33   5.4  
tr|A5C6A6|A5C6A6_VITVI Putative uncharacterized protein OS=Vitis...    33   5.4  
tr|B1IPU1|B1IPU1_ECOLC Putative uncharacterized protein OS=Esche...    33   7.1  
tr|A9TBL8|A9TBL8_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A5YJW5|A5YJW5_SOYBN LYK2 OS=Glycine max GN=LYK2 PE=4 SV=1           33   7.1  
tr|A9V1U7|A9V1U7_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.1  

>tr|A2EC08|A2EC08_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_137730 PE=4 SV=1
          Length = 468

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = -3

Query: 219 TSGATSIDEQLQKVYDVLHRIVEL---ERQNIGINMPSTGLMRFLDTGKSNQPTLSQMET 49
           T+  T+++   QK YD +HRIVEL   + + + + +  T +++ LD  KS    LS++  
Sbjct: 375 TATTTTLEFLFQK-YDFIHRIVELLEIDHETLNLAICHT-IIKILDAAKSGSEDLSEVSK 432

Query: 48  PSVSPIDP 25
             V  IDP
Sbjct: 433 TLVQEIDP 440


>tr|Q2GLZ4|Q2GLZ4_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_11062 PE=4 SV=1
          Length = 1136

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -3

Query: 234 DVLQSTSGATSIDEQLQKVYDVLHRI--VELERQNIGINMPSTGL-MRFLDTGKSNQPTL 64
           D +Q    + ++ +Q+  VY+V  R+  +E+   N    +   G     LDT K N+PT 
Sbjct: 259 DPVQDRQQSQAVMQQMSAVYEVDGRLFRIEMADDNGKFELDGHGHDSAELDTAK-NEPTT 317

Query: 63  SQMETPSVSPIDPPYVVSP 7
           +  ET SVSP+ P    SP
Sbjct: 318 AITETKSVSPLTPGLPDSP 336


>tr|Q30S72|Q30S72_SULDN Putative uncharacterized protein
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=Suden_0881 PE=4 SV=1
          Length = 392

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
 Frame = -3

Query: 396 EGQAMRSNNASTSRATSDTP----GLDGIFLNENWEYDLQADALTDRYTGHTYHV---G* 238
           E   + S   + S AT   P    GL+ + LN N+ +   A+A+  ++ G T      G 
Sbjct: 36  EQSILASRQNTLSEATYKNPILSIGLNDMLLNNNF-FRRDAEAMQTQFIGITQEFETFGK 94

Query: 237 LDVLQSTSGATSI--DEQLQKVYDVLHRIVELERQNIGINMPSTGLMRFLDTGKSNQPTL 64
           LD+ ++   A ++  + +L+ +   L++ + L+ + I     ST L+ FL+  KSN   L
Sbjct: 95  LDLKEAILRADTLILEYELEDLRLDLYKKMALKVEEIST---STSLLEFLEEKKSNLSLL 151

Query: 63  SQMETPSVSPID 28
            +    S++ +D
Sbjct: 152 LKYSEASINIVD 163


>tr|Q1ICL8|Q1ICL8_PSEE4 Putative bifunctional
           serine/threonine-protein kinase and phosphatase
           OS=Pseudomonas entomophila (strain L48) GN=PSEEN1751
           PE=4 SV=1
          Length = 556

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
 Frame = -3

Query: 279 LTDRYTGHTYHVG*LDVLQSTSGATSIDEQLQKVYDVLHRIVELERQNI--------GIN 124
           L   Y G T     L  L +T G   + + L+    +LH +  L R+N+         ++
Sbjct: 335 LMREYPGET-----LATLFATHGPLPLPQWLEIARQLLHAVGALHRRNLLHRDIKPENLH 389

Query: 123 MPSTGLMRFLDTGKSNQPTLSQMETPSVSPIDPPYV 16
           + S G +R LD G +  P LS+ + P   P  P Y+
Sbjct: 390 LGSDGQLRVLDFGLAYCPGLSE-DLPHTLPGTPSYI 424


>tr|A7PKZ1|A7PKZ1_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019367001
           PE=4 SV=1
          Length = 855

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 29  SMGLTEGVSICDRVGWLDFPVSKNLI 106
           S+ L EG+++C  VGW+DF  S NL+
Sbjct: 440 SVKLDEGLNMCSLVGWMDFQFSDNLL 465


>tr|A5C6A6|A5C6A6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042892 PE=4 SV=1
          Length = 995

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 29  SMGLTEGVSICDRVGWLDFPVSKNLI 106
           S+ L EG+++C  VGW+DF  S NL+
Sbjct: 440 SVKLDEGLNMCSLVGWMDFQFSDNLL 465


>tr|B1IPU1|B1IPU1_ECOLC Putative uncharacterized protein
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=EcolC_3447 PE=4 SV=1
          Length = 163

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 24  EDQWGSLRESPFVIGLVGWTFPYPRIS-LGLLKAC*YLCSVFLTRQSYGGHH 176
           E +W S   S +++ L  W+FP  R+  LGL KAC  L    + R + G  H
Sbjct: 96  ESEWISYTGSGYLLHLGAWSFPVLRLKRLGLSKACRRLVVTLIRRYAVGIVH 147


>tr|A9TBL8|A9TBL8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193513 PE=4 SV=1
          Length = 1214

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
 Frame = -3

Query: 249 HVG*LDVLQSTSGATSIDEQLQKVY------------------DVLHRIVELERQNIGIN 124
           +V  LD+ QS S  TS+DE   K++                   +LH+++ L   +  +N
Sbjct: 680 NVSNLDMAQSNSSTTSVDEVSGKIHRDASADSSSAKTSNLSQPGILHQVLHLITPSELMN 739

Query: 123 MPSTGLMRFLDTGKSNQPTLSQMETPSVSPIDPPYVVSPRS 1
           +P       +D   S+ P  +   + + + IDP ++    S
Sbjct: 740 LPEGETSHIVDPVSSSTPMAAAAPSTAPAAIDPAFLAQVAS 780


>tr|A5YJW5|A5YJW5_SOYBN LYK2 OS=Glycine max GN=LYK2 PE=4 SV=1
          Length = 600

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -3

Query: 228 LQSTSGATSIDEQLQKVYDVLHRIVELER----QNIGINMPSTGLMRFLDTGKSNQPTLS 61
           L S  G   I E    VY  +HR ++ E     +N G  +   GL + +D G S+ PT++
Sbjct: 403 LDSARGLQYIHEHTVPVY--IHRDIKSENILIDKNFGAKVADFGLTKLIDVGSSSLPTVN 460

Query: 60  QMETPSVSPIDPPY-VVSPR 4
              T    P +  Y  VSP+
Sbjct: 461 MKGTFGYMPPEYAYGNVSPK 480


>tr|A9V1U7|A9V1U7_MONBE Predicted protein OS=Monosiga brevicollis
           GN=9021 PE=4 SV=1
          Length = 2204

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -3

Query: 234 DVLQSTSGATSIDEQL--QKVYDVLHRIVELERQN---IGINMPSTGLMRFLDTGKSNQP 70
           D++ ST  +TS  E L  +  + VL    + E      +  ++PSTG+    +T  + QP
Sbjct: 719 DLMTSTPASTSTSEDLVDESGWSVLSTTTQEESSGDVGLSTSVPSTGVSTATNTFNTTQP 778

Query: 69  TLSQMETPSVSPID 28
             +   TP+VS  D
Sbjct: 779 ATNTTGTPAVSTTD 792