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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915643
Clone id YMU001_000074_A07
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGGCATTTCCTCCCTGCTTCCTGCTGGACAATCCGATACCGTGTTATTGATTATCCGGAA
GCCCAACAACTTGTTGTCCCATGAACCCCTGCTTATTCCCGACACTAACTCTCTACTTTC
TCCTTCCTTGGTACTCCCTGAGAAGTGAGTATCACCTGGACCAAAAACATTTTCAGACTT
GTTGATCAGGCCTGCAATTTGGGGTTTCTCTTCATGCACTTCCACATCCATATACTCATC
AGCTGGGCGCTCTAGATCGAGTATCGGGCGATACGGGGGAGGTTTCTCCAAGTCGAACAT
CTGGTGTCTGCCTTGATTTTGGCTCGATGTATAAACTTCAGTCAATAGGTGACTGCTTGG
TTTTCCGCTCGATCCACTATCCTCGAAGCGCTTCACATCATCCATCCTATCAAGAAGAGC
ACGATAGCTTTGGTTGTTCTCAAAACCCTTTGTGGAACTTGCATTACCAAAGCTTCGCTC
CTCATGCAATCGTAAGGTCTCTGGATTGCATAAAAATGAACCATTTGACGATGGAGGCTC
TGGCACGCGG
■■Homology search results ■■ -
sp_hit_id Q06SH2
Definition sp|Q06SH2|YCF78_STIHE Uncharacterized membrane protein ycf78 OS=Stigeoclonium helveticum
Align length 168
Score (bit) 33.1
E-value 0.92
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915643|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A07.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06SH2|YCF78_STIHE Uncharacterized membrane protein ycf78 OS=...    33   0.92 
sp|Q9UUI3|SA145_SCHPO Spliceosome-associated protein 145 OS=Schi...    31   3.5  
sp|O14192|AATR1_SCHPO Aromatic amino acid aminotransferase C56E4...    31   3.5  
sp|Q2JRN9|HRCA_SYNJA Heat-inducible transcription repressor hrcA...    30   5.9  
sp|Q48440|HPAB_KLEOX 4-hydroxyphenylacetate 3-monooxygenase oxyg...    30   6.0  
sp|Q8VD90|RNS1G_RATFU Ribonuclease pancreatic gamma-type OS=Ratt...    30   7.7  
sp|A1VA10|GLPK_DESVV Glycerol kinase OS=Desulfovibrio vulgaris s...    30   7.8  
sp|Q726H4|GLPK_DESVH Glycerol kinase OS=Desulfovibrio vulgaris (...    30   7.8  
sp|Q5BK24|CH076_RAT Uncharacterized protein C8orf76 homolog OS=R...    30   7.8  
sp|O23372|ATXR3_ARATH Probable histone-lysine N-methyltransferas...    30   7.8  

>sp|Q06SH2|YCF78_STIHE Uncharacterized membrane protein ycf78
            OS=Stigeoclonium helveticum GN=ycf78 PE=3 SV=1
          Length = 3707

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 16/168 (9%)
 Frame = -2

Query: 516  FLCNPETLRLHEERS--FGNASSTKGFENNQSYRALLDRMDDVKRFEDS--GSSGKPSSH 349
            FL N E   LH  R   F +  S + +    +YR + + +   K F +       K + H
Sbjct: 1227 FLTNTEEKLLHLRRFLLFEHYDSLRWYTYMTNYRTMKNTIGGTKSFTNRMYNQQFKGTFH 1286

Query: 348  LLTEVY--TSSQNQGRHQMFDLEKPPPYRPILDLERPADEYMDVEVHEEKPQIAGLINKS 175
             +  ++  T S + G    FD       RP+ +LE+     +  + HEE       +   
Sbjct: 1287 KVRHLFSLTPSSSNGSLLKFD-------RPLYNLEKTNQSSLTSQAHEELQNFTNFLKHD 1339

Query: 174  ENVFGPGDTHFSG----------STKEGESRELVSGISRGSWDNKLLG 61
            +NV    D               S  +GE  E  +     S+ NK +G
Sbjct: 1340 DNVLSEIDDFREKLLEKKAKAFFSNNDGEKSEAKASTVPQSFLNKSIG 1387


>sp|Q9UUI3|SA145_SCHPO Spliceosome-associated protein 145
           OS=Schizosaccharomyces pombe GN=sap145 PE=1 SV=1
          Length = 601

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = -2

Query: 363 KPSSHLLTEVYTSSQNQGRHQMFDLEKPPPYRPILDLERPADEYMDVEVHEEKPQIAGLI 184
           KP  H  T    S+Q+ G  + F+ E+        D+E P +E  + E  EE    +   
Sbjct: 413 KPRIHAGTGSPVSTQHWGELEEFEEEESSEEEESEDVEYPTEEITERETIEEYQSASEPR 472

Query: 183 NKSENVFGPGDTHFSGSTKEGESREL 106
           ++ E++     T+F+ S  E ++ EL
Sbjct: 473 SQREDLHAEPLTYFNQSNVEVDNVEL 498


>sp|O14192|AATR1_SCHPO Aromatic amino acid aminotransferase C56E4.03
           OS=Schizosaccharomyces pombe GN=SPAC56E4.03 PE=2 SV=1
          Length = 474

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
 Frame = -2

Query: 417 LLDRMDDVKRFEDSGSSGKPSSHLLTEVYTSSQNQG-------RHQMFDLEKPPPYRPIL 259
           L + MDD+    D+ S G P  H+L  + T     G       R Q++ L +      I+
Sbjct: 185 LPESMDDILTNWDATSYGSPKPHVLYTIPTGQNPTGSTLSVERRKQIYTLAQK---HDII 241

Query: 258 DLERPADEYMDVEVHEEKPQIA 193
            LE     Y+ ++ +E KP+ A
Sbjct: 242 ILEDEPYYYLQMDAYEGKPEAA 263


>sp|Q2JRN9|HRCA_SYNJA Heat-inducible transcription repressor hrcA
           OS=Synechococcus sp. (strain JA-3-3Ab) GN=hrcA PE=3 SV=1
          Length = 392

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 249 ALDRVSGDTGEVSPSRTSGVCLDFGSMYKLQSIGDCLVFRSIHYPRSA 392
           A ++ S  T +  PS    V +  GS   L+S+  C V  S++  RSA
Sbjct: 311 AREKASSSTADQDPSHNVPVIIYIGSENPLESLHHCTVIASVYRRRSA 358


>sp|Q48440|HPAB_KLEOX 4-hydroxyphenylacetate 3-monooxygenase
           oxygenase component OS=Klebsiella oxytoca GN=hpaB PE=2
           SV=1
          Length = 520

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 333 YTSSQNQGRHQMFDLEKPPPYRPILDLERPADEYMDVEVHEEKPQIAGLINKSENVFGPG 154
           YT  Q  G +    +  PP     +D  +PADE  DV +  EK   AG+I     V    
Sbjct: 143 YTRIQETGLYFNHAIVNPP-----IDRHKPADEVKDVYIKLEKETDAGIIVSGAKVVATN 197

Query: 153 D--THFS 139
              TH++
Sbjct: 198 SALTHYN 204


>sp|Q8VD90|RNS1G_RATFU Ribonuclease pancreatic gamma-type OS=Rattus
           fuscipes PE=3 SV=1
          Length = 152

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 342 SIGDCLVFRSIHYPRSASHHPSYQEEHDSFGCSQNPLWNLHYQS 473
           +I DCL+  S  YP+   +  + +++H    C  NP   +HY +
Sbjct: 108 NITDCLLMGSSKYPK-CDYSTTARQKHSIIACDGNPYVPVHYDA 150


>sp|A1VA10|GLPK_DESVV Glycerol kinase OS=Desulfovibrio vulgaris
           subsp. vulgaris (strain DP4) GN=glpK PE=3 SV=1
          Length = 497

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = -2

Query: 180 KSENVFGPGDTHFSGSTKEGE---------SRELVSGISRGSWDNKLLGFRIINNTVSDC 28
           K E +FG  DT    +  +G+         SR L+  I+ G+WD++LLG   +  ++   
Sbjct: 156 KGELLFGTIDTWLIWNLTKGKAHVTDSSNASRTLMFNINTGAWDDELLGILDVPRSMLPR 215

Query: 27  PAGSRE 10
             GS E
Sbjct: 216 VTGSSE 221


>sp|Q726H4|GLPK_DESVH Glycerol kinase OS=Desulfovibrio vulgaris
           (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glpK
           PE=3 SV=1
          Length = 497

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = -2

Query: 180 KSENVFGPGDTHFSGSTKEGE---------SRELVSGISRGSWDNKLLGFRIINNTVSDC 28
           K E +FG  DT    +  +G+         SR L+  I+ G+WD++LLG   +  ++   
Sbjct: 156 KGELLFGTIDTWLIWNLTKGKAHVTDSSNASRTLMFNINTGAWDDELLGILDVPRSMLPR 215

Query: 27  PAGSRE 10
             GS E
Sbjct: 216 VTGSSE 221


>sp|Q5BK24|CH076_RAT Uncharacterized protein C8orf76 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 374

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 549 RVPEPPSSNGSFLCNPETLRLHEERSFGN---ASSTKGFENNQSYR 421
           R PEPPSS G+ LC P+    +EE    N     + K F  + +YR
Sbjct: 23  RQPEPPSSYGAKLCEPQW--FYEETESSNDIEVLTLKKFRGDLAYR 66


>sp|O23372|ATXR3_ARATH Probable histone-lysine N-methyltransferase
           ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=1 SV=1
          Length = 2351

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
 Frame = -2

Query: 528 SNGSFLCNP-----ETLRLHEERSF--GNASSTKGFENNQSYRALLDRMDDVKRFEDSGS 370
           S+G   C P     E L + E+ +   GN S T     N  + ++  ++ + +      +
Sbjct: 2   SDGGVACMPLLNIMEKLPIVEKTTLCGGNESKTAATTEN-GHTSIATKVPESQPANKPSA 60

Query: 369 SGKPSSH-----LLTEVYTSSQNQGRHQMFDLEKPPPYRPILDLERPADEYMDVEVHEEK 205
           S +P        ++ +V      Q + Q  +  K  P   ++ L  PA+  + ++  ++K
Sbjct: 61  SSQPVKKKRIVKVIRKVVKRRPKQPQKQADEQLKDQPPSQVVQL--PAESQLQIKEQDKK 118

Query: 204 PQIAGLINKSENVFGPGDTHFSGSTKEGE 118
            +  G  +  + V   GD+ F    +EGE
Sbjct: 119 SEFKGGTSGVKEVENGGDSGFKDEVEEGE 147
tr_hit_id Q0CR50
Definition tr|Q0CR50|Q0CR50_ASPTN Putative uncharacterized protein OS=Aspergillus terreus (strain NIH 2624)
Align length 118
Score (bit) 37.4
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915643|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A07.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0CR50|Q0CR50_ASPTN Putative uncharacterized protein OS=Asper...    37   0.53 
tr|Q68EQ4|Q68EQ4_XENTR Sytl2 protein OS=Xenopus tropicalis GN=sy...    37   0.69 
tr|A4X8F7|A4X8F7_SALTO 4-hydroxyphenylacetate 3-hydroxylase OS=S...    35   3.4  
tr|Q2GTL9|Q2GTL9_CHAGB Predicted protein OS=Chaetomium globosum ...    35   3.4  
tr|A4ZRP7|A4ZRP7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    34   4.5  
tr|B2YMQ6|B2YMQ6_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.7  
tr|B2YMP4|B2YMP4_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.7  
tr|B2YMP0|B2YMP0_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.7  
tr|A7KVW5|A7KVW5_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.7  
tr|Q6BSX2|Q6BSX2_DEBHA DEHA2D05324p OS=Debaryomyces hansenii GN=...    33   7.7  
tr|Q96953|Q96953_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   10.0 
tr|A7LC99|A7LC99_TOSV Polyprotein OS=Toscana virus PE=4 SV=1           33   10.0 
tr|Q1H207|Q1H207_METFK ATP-dependent helicase HrpA OS=Methylobac...    33   10.0 
tr|B6VM19|B6VM19_9ENTR 4-hydroxyphenylacetate 3-monooxygenase ox...    33   10.0 
tr|A2FL64|A2FL64_TRIVA Putative uncharacterized protein OS=Trich...    33   10.0 

>tr|Q0CR50|Q0CR50_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_03834
           PE=4 SV=1
          Length = 1173

 Score = 37.4 bits (85), Expect = 0.53
 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
 Frame = -2

Query: 543 PEPPSSNGSFLCNPETLRLHEERSFGNASSTKGFE---NNQSYRALLDRMDDVKRFEDSG 373
           P+PP S G    + E     EE    NA+++KG E   +N    A     +D    ED  
Sbjct: 93  PKPPRSTGEASEDQELFHDVEETVSSNAAASKGSERESDNALESAPKTSKEDQSTTEDLS 152

Query: 372 SSGKPSSHLLTEVYTSSQNQGRHQMFDLEKPPPYRPILDLERPADEYMDVEVHEEKPQ 199
             G  SS  +T    ++Q++      D EKP P   +     PA E      + EK Q
Sbjct: 153 EQGAQSSTPMTTESDTAQDKKAMGSMDAEKPAPPSDV----PPAGENGSPPPYTEKAQ 206


>tr|Q68EQ4|Q68EQ4_XENTR Sytl2 protein OS=Xenopus tropicalis GN=sytl2
           PE=2 SV=1
          Length = 939

 Score = 37.0 bits (84), Expect = 0.69
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
 Frame = -2

Query: 399 DVKRFEDSGSSGKPSSHL---LTEVYTSSQNQGRHQMFDLEKPPPYRPILDLERPADEYM 229
           D+KR +  GSSG+P S L    +   T S++    Q  DL K     PIL  E P DE  
Sbjct: 263 DLKREDSFGSSGRPKSILKRRSSSSSTDSESIRLAQKADLNKIGLSTPILQAE-PVDESP 321

Query: 228 DVEVHEEKPQIAGLINKSENVFGPGDTHFSGSTKEGESRELVSGISRGSWDNK 70
           D     +  Q+    N  +N   PG     G  + GE   L  G+S+ S +N+
Sbjct: 322 D-----KLKQVRFSANVHQNPPSPGGESVGGK-EIGEFGILEPGLSQASLENR 368


>tr|A4X8F7|A4X8F7_SALTO 4-hydroxyphenylacetate 3-hydroxylase
           OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818
           / CNB-440) GN=Strop_2713 PE=4 SV=1
          Length = 516

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 267 PILDLERPADEYMDVEVHEEKPQIAGLINKSENVFGPGD--THFS 139
           P +D +RP DE  DV VH E+   AGLI     V   G   TH+S
Sbjct: 156 PPVDRDRPPDEVADVFVHVEQETDAGLIVSGAKVVATGSALTHYS 200


>tr|Q2GTL9|Q2GTL9_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_08685 PE=4 SV=1
          Length = 741

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
 Frame = -2

Query: 504 PETLRLHEERSFGNASSTKGFENNQSYRALLDRMDDVKRFEDSGSSGKPSS---HLLTEV 334
           P+ +  H+E S       + +E +Q  +A  D + + +  EDSGS  +  +   + L + 
Sbjct: 72  PDEMEQHQEESQNQVGVDQPYEEDQGLKANEDSVSETQIDEDSGSETEAQASAFNRLFDA 131

Query: 333 YTSSQNQGRHQMFDL------EKPPPY 271
             S+++ GR     +      E+PPPY
Sbjct: 132 VQSAEHSGRETPPSIGGSVYREQPPPY 158


>tr|A4ZRP7|A4ZRP7_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 136

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -2

Query: 162 GPGDTHFSGSTKEGESRELVSGISRGSWDN------KLLGFRIINNTVS 34
           GPG T ++ +   G+ R+    ISRG+W+N      K LG   +N T++
Sbjct: 76  GPGQTFYATNDIIGDIRQAYCNISRGAWNNTLEMVKKKLGEHFLNKTIT 124


>tr|B2YMQ6|B2YMQ6_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 872

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 204 PQIAGLINKSENVFGPGDTHFSGSTKEGESRELVSGISRGSWDNKLLGFRII 49
           P I GLIN S N+ G   T   G+T   E+     G  R +W ++L  ++++
Sbjct: 454 PPIQGLINCSSNITGILLTRDGGNTTNNETFRPTGGDMRDNWRSELYKYKVV 505


>tr|B2YMP4|B2YMP4_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 872

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 204 PQIAGLINKSENVFGPGDTHFSGSTKEGESRELVSGISRGSWDNKLLGFRII 49
           P I GLIN S N+ G   T   G+T   E+     G  R +W ++L  ++++
Sbjct: 454 PPIQGLINCSSNITGILLTRDGGNTTNNETFRPTGGDMRDNWRSELYKYKVV 505


>tr|B2YMP0|B2YMP0_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 872

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 204 PQIAGLINKSENVFGPGDTHFSGSTKEGESRELVSGISRGSWDNKLLGFRII 49
           P I GLIN S N+ G   T   G+T   E+     G  R +W ++L  ++++
Sbjct: 454 PPIQGLINCSSNITGILLTRDGGNTTNNETFRPTGGDMRDNWRSELYKYKVV 505


>tr|A7KVW5|A7KVW5_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 872

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 204 PQIAGLINKSENVFGPGDTHFSGSTKEGESRELVSGISRGSWDNKLLGFRII 49
           P I GLIN S N+ G   T   G+T   E+     G  R +W ++L  ++++
Sbjct: 454 PPIQGLINCSSNITGILLTRDGGNTTNNETFRPTGGDMRDNWRSELYKYKVV 505


>tr|Q6BSX2|Q6BSX2_DEBHA DEHA2D05324p OS=Debaryomyces hansenii
           GN=DEHA2D05324g PE=4 SV=2
          Length = 710

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -2

Query: 525 NGSFLCNPETLRLHEERSFGNASSTKGFENNQSYRALLDRMDDVKRFED 379
           N SFL +    R+ EERS GN S T+  +N+ +    LD  DD+   E+
Sbjct: 229 NHSFLKSKIRRRVREERSRGNYSLTRPQDNSGTEDIFLDTFDDLPTIEE 277