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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915644
Clone id YMU001_000074_A08
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCTCGGATTGATGATATACTTGATAAGTTGCAGGGTGCGTGTCTTTGTCGCATAGACTT
AAAGAGTGGGTATCATCAGATACGGATCGCCCCTGAGGATGTCCATAAGACTGCTTTCCG
CACAACCTTTGGACTATATGAATTCTTGGTAATGCCTTTCGGCTTGACCAATGCTCCTGA
CGACGTTCAATCGCATGATGGACCGCATTTTCAGCCCGTATCGAGCTTTTACGGGAGTAT
TCTTTGACGACATACTCATCTTCTCTAAGTCAGAAGAGGAACATCGGAAGCACTTGGACT
TAGTGTTTCAAGAATTGTGAAAGCATGAGTCGCATGTGAATGCAAAGAAGAGCGAGTTCT
TTCTCTCTGAGATACACTATCTCGGCCATATAGTCTCCCACAATAAAGTGAGTATGGATC
CTGCCAAGATCCGAGTGGTAGAAGATTGGCCTATTCCCACTACGGTACATGATGTACGTA
G
■■Homology search results ■■ -
sp_hit_id Q99315
Definition sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
Align length 96
Score (bit) 68.2
E-value 2.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915644|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A08.
         (481 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa...    68   2e-25
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa...    68   2e-25
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra...    69   3e-25
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra...    67   1e-23
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra...    69   3e-22
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    69   3e-21
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot...    64   2e-19
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot...    63   2e-18
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot...    63   2e-18
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra...    54   7e-17
sp|P19199|POL_COYMV Putative polyprotein OS=Commelina yellow mot...    51   1e-15
sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform vi...    56   4e-14
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oeno...    65   2e-13
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorha...    47   3e-12
sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus...    42   2e-10
sp|P15629|POL_SOCMV Enzymatic polyprotein OS=Soybean chlorotic m...    42   1e-09
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ...    58   2e-08
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ...    58   2e-08
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ...    58   2e-08
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ...    58   2e-08
sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic ...    57   4e-08
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ...    56   7e-08
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p...    40   1e-06
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin...    37   3e-06
sp|P92523|M860_ARATH Uncharacterized mitochondrial protein AtMg0...    49   9e-06
sp|Q7TD08|POL_CYLCV Enzymatic polyprotein OS=Cestrum yellow leaf...    47   3e-05
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr...    47   4e-05
sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapi...    44   5e-04
sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos tauru...    42   0.001
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing...    42   0.002

>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3
          Length = 1547

 Score = 68.2 bits (165), Expect(2) = 2e-25
 Identities = 39/96 (40%), Positives = 51/96 (53%)
 Frame = +3

Query: 180  TTFNRMMDRIFSPYRAFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEF 359
            +TF R M   F   R F  V+ DDILIFS+S EEH KHLD V + L      V  KK +F
Sbjct: 727  STFARYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 785

Query: 360  FLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTV 467
               E  +LG+ +   K++    K   + D+P P TV
Sbjct: 786  ASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 821



 Score = 67.0 bits (162), Expect(2) = 2e-25
 Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRID++L ++  A +   +DL SGYHQI + P+D +KTAF T  G YE+ VMPFGL NAP
Sbjct: 667 PRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAP 726


>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2
          Length = 1498

 Score = 68.2 bits (165), Expect(2) = 2e-25
 Identities = 39/96 (40%), Positives = 51/96 (53%)
 Frame = +3

Query: 180  TTFNRMMDRIFSPYRAFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEF 359
            +TF R M   F   R F  V+ DDILIFS+S EEH KHLD V + L      V  KK +F
Sbjct: 753  STFARYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKF 811

Query: 360  FLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTV 467
               E  +LG+ +   K++    K   + D+P P TV
Sbjct: 812  ASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 847



 Score = 67.0 bits (162), Expect(2) = 2e-25
 Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRID++L ++  A +   +DL SGYHQI + P+D +KTAF T  G YE+ VMPFGL NAP
Sbjct: 693 PRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAP 752


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
           transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1058

 Score = 68.6 bits (166), Expect(2) = 3e-25
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
 Frame = +3

Query: 183 TFNRMMDRIFSPY-RAFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEF 359
           TF R M+ I  P       V+ DDI++FS S +EH + L LVF++L K    +   K EF
Sbjct: 344 TFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEF 403

Query: 360 FLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
              E  +LGH+++ + +  +P KI  ++ +PIPT   +++
Sbjct: 404 LKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443



 Score = 65.5 bits (158), Expect(2) = 3e-25
 Identities = 36/65 (55%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
 Frame = +2

Query: 2   PRIDDILDKLQGAC--LCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNA 175
           P +D+IL KL G C     IDL  G+HQI + PE V KTAF T  G YE+L MPFGL NA
Sbjct: 283 PNMDEILGKL-GRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341

Query: 176 PDDVQ 190
           P   Q
Sbjct: 342 PATFQ 346


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
           transposon 297 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1059

 Score = 67.0 bits (162), Expect(2) = 1e-23
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
 Frame = +3

Query: 183 TFNRMMDRIFSPY-RAFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEF 359
           TF R M+ I  P       V+ DDI+IFS S  EH   + LVF +L      +   K EF
Sbjct: 343 TFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEF 402

Query: 360 FLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
              E ++LGHIV+ + +  +P K++ +  +PIPT   ++R
Sbjct: 403 LKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442



 Score = 61.6 bits (148), Expect(2) = 1e-23
 Identities = 34/65 (52%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +2

Query: 2   PRIDDILDKLQGAC--LCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNA 175
           P +D+IL KL G C     IDL  G+HQI +  E + KTAF T  G YE+L MPFGL NA
Sbjct: 282 PNMDEILGKL-GKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 176 PDDVQ 190
           P   Q
Sbjct: 341 PATFQ 345


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
           transposon opus OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1003

 Score = 69.3 bits (168), Expect(2) = 3e-22
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYRA-FTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F RM+D I   +      V+ DDI++FS+  + H K+L LV   L K    VN +KS F 
Sbjct: 261 FQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFL 320

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
            +++ +LG+IV+ + +  DP K+R + + P PT+V +++
Sbjct: 321 DTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359



 Score = 55.1 bits (131), Expect(2) = 3e-22
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +2

Query: 53  IDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           +DL SG+HQI +   D+ KTAF T  G YEFL +PFGL NAP
Sbjct: 217 LDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258


>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
           transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1035

 Score = 69.3 bits (168), Expect(2) = 3e-21
 Identities = 30/81 (37%), Positives = 51/81 (62%)
 Frame = +3

Query: 237 VFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFFLSEIHYLGHIVSHNKVSM 416
           V+ DD++IFS++E +H +H+D V + L      V+ +K+ FF   + YLG IVS +    
Sbjct: 338 VYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKS 397

Query: 417 DPAKIRVVEDWPIPTTVHDVR 479
           DP K++ ++++P P  V+ VR
Sbjct: 398 DPEKVKAIQEYPEPDCVYKVR 418



 Score = 51.6 bits (122), Expect(2) = 3e-21
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = +2

Query: 53  IDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNA 175
           +DLKSGYHQI +A  D  KT+F    G YEF  +PFGL NA
Sbjct: 276 LDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
           type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
          Length = 1333

 Score = 63.9 bits (154), Expect(2) = 2e-19
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           P I+ +L K+QG+ +  ++DLKS YH IR+   D HK AFR   G++E+LVMP+G++ AP
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542

Query: 179 DDVQ 190
              Q
Sbjct: 543 AHFQ 546



 Score = 50.4 bits (119), Expect(2) = 2e-19
 Identities = 28/80 (35%), Positives = 41/80 (51%)
 Frame = +3

Query: 240 FFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFFLSEIHYLGHIVSHNKVSMD 419
           + DDILI SKSE EH KH+  V Q+L      +N  K EF  S++ ++G+ +S    +  
Sbjct: 564 YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623

Query: 420 PAKIRVVEDWPIPTTVHDVR 479
              I  V  W  P    ++R
Sbjct: 624 QENIDKVLQWKQPKNRKELR 643


>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
           type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
          Length = 1333

 Score = 62.8 bits (151), Expect(2) = 2e-18
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           P I+ +L K+QG+ +  ++DLKS YH IR+   D HK AFR   G++E+LVMP+G++ AP
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542

Query: 179 DDVQ 190
              Q
Sbjct: 543 AHFQ 546



 Score = 48.5 bits (114), Expect(2) = 2e-18
 Identities = 27/80 (33%), Positives = 41/80 (51%)
 Frame = +3

Query: 240 FFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFFLSEIHYLGHIVSHNKVSMD 419
           + D+ILI SKSE EH KH+  V Q+L      +N  K EF  S++ ++G+ +S    +  
Sbjct: 564 YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623

Query: 420 PAKIRVVEDWPIPTTVHDVR 479
              I  V  W  P    ++R
Sbjct: 624 QENIDKVLQWKQPKNRKELR 643


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
           type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
          Length = 1333

 Score = 62.8 bits (151), Expect(2) = 2e-18
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           P I+ +L K+QG+ +  ++DLKS YH IR+   D HK AFR   G++E+LVMP+G++ AP
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542

Query: 179 DDVQ 190
              Q
Sbjct: 543 AHFQ 546



 Score = 48.5 bits (114), Expect(2) = 2e-18
 Identities = 27/80 (33%), Positives = 41/80 (51%)
 Frame = +3

Query: 240 FFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFFLSEIHYLGHIVSHNKVSMD 419
           + D+ILI SKSE EH KH+  V Q+L      +N  K EF  S++ ++G+ +S    +  
Sbjct: 564 YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623

Query: 420 PAKIRVVEDWPIPTTVHDVR 479
              I  V  W  P    ++R
Sbjct: 624 QENIDKVLQWKQPKNRKELR 643


>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
           transposon 412 OS=Drosophila melanogaster GN=POL PE=4
           SV=1
          Length = 1237

 Score = 53.5 bits (127), Expect(2) = 7e-17
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
 Frame = +3

Query: 183 TFNRMMDRIFS---PYRAFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKS 353
           +F RMM   FS   P +AF  ++ DD+++   SE+   K+L  VF +  ++   ++ +K 
Sbjct: 452 SFQRMMTIAFSGIEPSQAF--LYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKC 509

Query: 354 EFFLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
            FF+ E+ +LGH  +   +  D  K  V++++P+P      R
Sbjct: 510 SFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSAR 551



 Score = 52.4 bits (124), Expect(2) = 7e-17
 Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
 Frame = +2

Query: 2   PRIDDILDKLQGA----CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLT 169
           PRIDDILD+L  A    CL   DL SG+HQI +       T+F T+ G Y F  +PFGL 
Sbjct: 391 PRIDDILDQLGRAKYFSCL---DLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLK 447

Query: 170 NAPDDVQ 190
            AP+  Q
Sbjct: 448 IAPNSFQ 454
tr_hit_id O64892
Definition tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus
Align length 101
Score (bit) 96.7
E-value 1.0e-40
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915644|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A08.
         (481 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus ...    97   1e-40
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s...    96   2e-37
tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    96   2e-37
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy...    96   2e-37
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G...    96   2e-37
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1        95   3e-37
tr|Q0DC29|Q0DC29_ORYSJ Os06g0493000 protein OS=Oryza sativa subs...    95   6e-37
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy...    96   8e-37
tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris ...    90   8e-37
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s...    96   8e-37
tr|Q65WY1|Q65WY1_ORYSJ Putative polyprotein OS=Oryza sativa subs...    92   1e-36
tr|Q2R4W7|Q2R4W7_ORYSJ Retrotransposon protein, putative, Ty3-gy...    96   1e-36
tr|Q8W5B7|Q8W5B7_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    96   1e-36
tr|Q10GH3|Q10GH3_ORYSJ Retrotransposon protein, putative, Ty3-gy...    96   1e-36
tr|Q7XM76|Q7XM76_ORYSA OSJNBa0079C19.6 protein OS=Oryza sativa G...    92   1e-36
tr|Q7XK08|Q7XK08_ORYSJ OSJNBa0061C08.12 protein OS=Oryza sativa ...    92   1e-36
tr|Q2QR37|Q2QR37_ORYSJ Retrotransposon protein, putative, Ty3-gy...    92   1e-36
tr|Q10NV6|Q10NV6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    92   1e-36
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy...    96   1e-36
tr|Q6UU19|Q6UU19_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    92   1e-36
tr|Q53NJ3|Q53NJ3_ORYSJ Retrotransposon protein, putative, unclas...    98   2e-36
tr|Q60DH0|Q60DH0_ORYSJ Putative polyprotein OS=Oryza sativa subs...    92   2e-36
tr|Q2R9I7|Q2R9I7_ORYSJ Retrotransposon protein, putative, unclas...    98   2e-36
tr|Q53PB2|Q53PB2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    95   2e-36
tr|Q9AYB6|Q9AYB6_ORYSA Polyprotein OS=Oryza sativa GN=OSJNBa0094...    91   2e-36
tr|Q94I04|Q94I04_ORYSA Putative retroelement OS=Oryza sativa GN=...    91   2e-36
tr|Q33A27|Q33A27_ORYSJ Retrotransposon protein, putative, Ty3-gy...    91   2e-36
tr|Q338U1|Q338U1_ORYSJ Retrotransposon protein, putative, Ty3-gy...    91   2e-36
tr|Q10LB6|Q10LB6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    91   2e-36
tr|Q109C6|Q109C6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    91   2e-36

>tr|O64892|O64892_ANACO Polyprotein (Fragment) OS=Ananas comosus
           PE=4 SV=1
          Length = 871

 Score = 96.7 bits (239), Expect(2) = 1e-40
 Identities = 44/101 (43%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
 Frame = +3

Query: 180 TTFNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSE 356
           T F  +M+R+F PY   F  VF DDIL++S+S+ +H +HL +V Q L + E +V  KK E
Sbjct: 148 TAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCE 207

Query: 357 FFLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           F+L E+ +LGH++S + +++DP KI  ++DWP  T+V ++R
Sbjct: 208 FWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSVTEIR 248



 Score = 93.6 bits (231), Expect(2) = 1e-40
 Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+LQG+C+  +IDL+SGYHQ++I PEDV KTAFRT +G YEF VMPFGLTNAP
Sbjct: 88  PRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFAVMPFGLTNAP 147


>tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0019D11.8 PE=4 SV=1
          Length = 1470

 Score = 96.3 bits (238), Expect(2) = 2e-37
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  +M+++F  Y   F  VF DDILI+SK EEEH +HL LV Q+L KH+ +    K EF+
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L E+ +LGH++S   V++DPAK+  V +W  P +V ++R
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIR 773



 Score = 82.8 bits (203), Expect(2) = 2e-37
 Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGA-CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+L+GA    +IDL+SGYHQ++I  ED+ KTAF T +GLYEF VM FGLTNAP
Sbjct: 613 PRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 672


>tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g28930 PE=4 SV=1
          Length = 1470

 Score = 96.3 bits (238), Expect(2) = 2e-37
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  +M+++F  Y   F  VF DDILI+SK EEEH +HL LV Q+L KH+ +    K EF+
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L E+ +LGH++S   V++DPAK+  V +W  P +V ++R
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIR 773



 Score = 82.8 bits (203), Expect(2) = 2e-37
 Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGA-CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+L+GA    +IDL+SGYHQ++I  ED+ KTAF T +GLYEF VM FGLTNAP
Sbjct: 613 PRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 672


>tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g28690 PE=4 SV=1
          Length = 1470

 Score = 96.3 bits (238), Expect(2) = 2e-37
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  +M+++F  Y   F  VF DDILI+SK EEEH +HL LV Q+L KH+ +    K EF+
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L E+ +LGH++S   V++DPAK+  V +W  P +V ++R
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIR 773



 Score = 82.8 bits (203), Expect(2) = 2e-37
 Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGA-CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+L+GA    +IDL+SGYHQ++I  ED+ KTAF T +GLYEF VM FGLTNAP
Sbjct: 613 PRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 672


>tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa
           GN=OSIGBa0145G11.8 PE=4 SV=1
          Length = 1470

 Score = 96.3 bits (238), Expect(2) = 2e-37
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  +M+++F  Y   F  VF DDILI+SK EEEH +HL LV Q+L KH+ +    K EF+
Sbjct: 675 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L E+ +LGH++S   V++DPAK+  V +W  P +V ++R
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIR 773



 Score = 82.8 bits (203), Expect(2) = 2e-37
 Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGA-CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+L+GA    +IDL+SGYHQ++I  ED+ KTAF T +GLYEF VM FGLTNAP
Sbjct: 613 PRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 672


>tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
          Length = 1484

 Score = 95.1 bits (235), Expect(2) = 3e-37
 Identities = 44/99 (44%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  MM+++F  Y   F  VF DDIL+FSK++EEH +HL LV Q+L +H+ +    K EF+
Sbjct: 693 FMYMMNKVFMEYLDKFVVVFIDDILVFSKTKEEHAEHLRLVLQKLREHKLYAKRSKCEFW 752

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L E+ +LGH+VS+  +++DP+K++ V +W  PT V ++R
Sbjct: 753 LEEVSFLGHVVSNGGIAVDPSKVKDVLNWKPPTDVSEIR 791



 Score = 83.6 bits (205), Expect(2) = 3e-37
 Identities = 38/60 (63%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+L+GAC+  +IDL+SGYHQ++I   D+ KTAF T +GLYE+ VM FGLTNAP
Sbjct: 631 PRIDDLFDQLRGACVFSKIDLRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLTNAP 690


>tr|Q0DC29|Q0DC29_ORYSJ Os06g0493000 protein OS=Oryza sativa subsp.
            japonica GN=Os06g0493000 PE=4 SV=1
          Length = 1573

 Score = 95.1 bits (235), Expect(2) = 6e-37
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +3

Query: 183  TFNRMMDRIFSPY-RAFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEF 359
            TF  +M++I +PY R F  VFFDDILI+SKS  EH +HL LV Q L  H+      K  F
Sbjct: 807  TFQALMNKILAPYLRKFVLVFFDDILIYSKSATEHAQHLSLVLQLLRHHQLFAKPSKCVF 866

Query: 360  FLSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
               ++ YLG+I+S + V+ DP K++ V++WP PT++ ++R
Sbjct: 867  GQDQVEYLGYIISSSGVATDPVKVQAVQNWPTPTSITELR 906



 Score = 82.4 bits (202), Expect(2) = 6e-37
 Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           P I+D+LD+LQGA +  +IDL+SGYHQIR+   DVHKTAF T  G +E+LVMPFGLTNAP
Sbjct: 746 PVIEDLLDELQGAQIFSKIDLRSGYHQIRMHAADVHKTAFSTHLGHFEYLVMPFGLTNAP 805

Query: 179 DDVQS 193
              Q+
Sbjct: 806 ATFQA 810


>tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g39950 PE=4 SV=1
          Length = 1712

 Score = 95.5 bits (236), Expect(2) = 8e-37
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186  FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
            F  +M+++F  Y   F  VF DDILI+SK EEEH +HL LV Q+L KH+ +    K EF+
Sbjct: 1016 FMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYKKFSKCEFW 1075

Query: 363  LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
            L E+ +LGH++S   V++DPAK+  V +W  P +V ++R
Sbjct: 1076 LKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIR 1114



 Score = 81.6 bits (200), Expect(2) = 8e-37
 Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2    PRIDDILDKLQGA-CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
            PRIDD+ D+L+GA     IDL+SGYHQ++I  ED+ KTAF T +GLYEF VM FGLTNAP
Sbjct: 954  PRIDDLFDQLKGAKVFSTIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 1013


>tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris
           PE=4 SV=1
          Length = 1501

 Score = 90.1 bits (222), Expect(2) = 8e-37
 Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  +M+RIF  +   F  VF DDILI+S++E EH +HL ++ + L K++ +    K EF 
Sbjct: 693 FMDLMNRIFHEFLDKFVVVFIDDILIYSRNETEHDEHLRIILETLRKNQLYAKFSKCEFR 752

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L ++ +LGH VS   VS+DPAKI+ V +WP P +V D+R
Sbjct: 753 LEKVAFLGHFVSKEGVSVDPAKIQAVSEWPTPKSVTDIR 791



 Score = 87.0 bits (214), Expect(2) = 8e-37
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGACL-CRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRIDD+ D+L GA +  +IDL+SGYHQ+R+A +DV KTAFRT +G YEF VMPFGLTNAP
Sbjct: 631 PRIDDLFDQLNGASVFSKIDLRSGYHQLRVADKDVPKTAFRTRYGHYEFTVMPFGLTNAP 690


>tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0059D20.6 PE=4 SV=2
          Length = 1470

 Score = 96.3 bits (238), Expect(2) = 8e-37
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = +3

Query: 186 FNRMMDRIFSPYR-AFTGVFFDDILIFSKSEEEHRKHLDLVFQEL*KHESHVNAKKSEFF 362
           F  +M+++F  Y   F  VF DDILI+SK EEEH +HL LV Q+L KH+ +    K EF+
Sbjct: 675 FMNLMNKVFMEYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFW 734

Query: 363 LSEIHYLGHIVSHNKVSMDPAKIRVVEDWPIPTTVHDVR 479
           L E+ +LGH++S   V++DPAK+  V +W  P +V ++R
Sbjct: 735 LKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIR 773



 Score = 80.9 bits (198), Expect(2) = 8e-37
 Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   PRIDDILDKLQGA-CLCRIDLKSGYHQIRIAPEDVHKTAFRTTFGLYEFLVMPFGLTNAP 178
           PRID++ D+L+GA    +IDL+SGYHQ++I  ED+ KTAF T +GLYEF VM FGLTNAP
Sbjct: 613 PRIDNLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 672