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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915647
Clone id YMU001_000074_A12
Library
Length 287
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGCAATGAGGCTGAAATGCTCGGAGTTCTTACTGCTTTTAAGTGGGTGATTTACTTCCA
AGTGGCAACGAAGAGAACGCAGAGCTCCAATTGTCAGCGGAGGGTGCGTTAGAAGAGTTG
CATGAGCTGCTCGGAGACGTGTTTTTGAGAGTTCTAGAGCAGGTAGACCAGGCGACGGCG
TCCCTGTCCATCAGCAAGGCAAGAGAAGAGGTCCTCCGCTCGCAGGCCAAACTATTGCTA
GAATTGATAGATTCCAGCAGTTGGTGACAAAGTTGGGTTTCTCCTTT
■■Homology search results ■■ -
sp_hit_id Q8A329
Definition sp|Q8A329|SYL_BACTN Leucyl-tRNA synthetase OS=Bacteroides thetaiotaomicron
Align length 37
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915647|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A12.
         (287 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8A329|SYL_BACTN Leucyl-tRNA synthetase OS=Bacteroides thetai...    31   2.2  
sp|Q05146|OMPA_BORAV Outer membrane protein A OS=Bordetella aviu...    31   2.2  
sp|A6KZH6|SYL_BACV8 Leucyl-tRNA synthetase OS=Bacteroides vulgat...    29   8.3  
sp|Q64MG4|SYL_BACFR Leucyl-tRNA synthetase OS=Bacteroides fragil...    29   8.3  
sp|Q5L7B4|SYL_BACFN Leucyl-tRNA synthetase OS=Bacteroides fragil...    29   8.3  
sp|P23770|GATA2_XENLA GATA-binding factor 2 OS=Xenopus laevis GN...    29   8.3  

>sp|Q8A329|SYL_BACTN Leucyl-tRNA synthetase OS=Bacteroides
           thetaiotaomicron GN=leuS PE=3 SV=1
          Length = 944

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 177 GVPVHQQGKRRGPPLAGQTIARIDRFQQLVTKLGFSF 287
           G+P  Q   + G   A  T A IDR+++ + K+GFSF
Sbjct: 82  GLPAEQYAIQTGQHPAITTKANIDRYREQLDKIGFSF 118


>sp|Q05146|OMPA_BORAV Outer membrane protein A OS=Bordetella avium
           GN=ompA PE=3 SV=1
          Length = 194

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 144 FESSRAGRPG-DGVPVHQQGKRRGPPLAGQTIARIDRF 254
           F +   G PG DGVPV QQ K +  P+A + +   D F
Sbjct: 51  FWTPATGIPGCDGVPVAQQPKEKPAPMAAKVVFNADTF 88


>sp|A6KZH6|SYL_BACV8 Leucyl-tRNA synthetase OS=Bacteroides vulgatus
           (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=leuS PE=3
           SV=1
          Length = 944

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 177 GVPVHQQGKRRGPPLAGQTIARIDRFQQLVTKLGFSF 287
           G+P  Q   + G   A  T+  I+R+++ + K+GFSF
Sbjct: 82  GLPAEQYAIQTGQHPAITTVNNINRYREQLDKIGFSF 118


>sp|Q64MG4|SYL_BACFR Leucyl-tRNA synthetase OS=Bacteroides fragilis
           GN=leuS PE=3 SV=1
          Length = 943

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 177 GVPVHQQGKRRGPPLAGQTIARIDRFQQLVTKLGFSF 287
           G+P  Q   + G   A  T+  I+R+++ + K+GFSF
Sbjct: 82  GLPAEQYAIQTGQHPAITTVNNINRYREQLDKIGFSF 118


>sp|Q5L7B4|SYL_BACFN Leucyl-tRNA synthetase OS=Bacteroides fragilis
           (strain ATCC 25285 / NCTC 9343) GN=leuS PE=3 SV=1
          Length = 943

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 177 GVPVHQQGKRRGPPLAGQTIARIDRFQQLVTKLGFSF 287
           G+P  Q   + G   A  T+  I+R+++ + K+GFSF
Sbjct: 82  GLPAEQYAIQTGQHPAITTVNNINRYREQLDKIGFSF 118


>sp|P23770|GATA2_XENLA GATA-binding factor 2 OS=Xenopus laevis
           GN=gata2 PE=2 SV=1
          Length = 452

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = -2

Query: 175 SPGLPALELSKTRLRAAHATLLTHPPLTIGALRSLRCH 62
           SPGLP LE  KT L AAH     H P T+        H
Sbjct: 92  SPGLPWLESGKTALSAAH----HHNPWTVSPFGKAPLH 125
tr_hit_id A8IGW2
Definition tr|A8IGW2|A8IGW2_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 52
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915647|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_A12.
         (287 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IGW2|A8IGW2_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   9.3  

>tr|A8IGW2|A8IGW2_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_188466 PE=4 SV=1
          Length = 107

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 172 PGLPALELSKTRLRAAHATLLTHPPLTIGALRSLRCHLEVNHPL--KSSKNS 23
           P  PA+ + +  +RA H T    PP  + A + LR   E N  L  KS  N+
Sbjct: 2   PTKPAISIFRQLIRAVHTTFQGDPPAIVAARKELRTAFEANRGLTEKSKVNA 53