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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915655
Clone id YMU001_000074_B09
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGATGATGGTGGGTGTTTTTTTAAGCAAGATCAAGTGTTGCACTATCAGTGGAAACAAGA
GGAAGGCCTAAAGAGAGGTTCAAAAACCAAAAGGGTCGCGATCGCTCAAGGCGGACCCAC
TAGGAGTGGTCATGCATATGCCAAAAACCCATGAGGAGTGGCCAAGCGATCGTGATTAGC
TACTGCTGATGACAATCGTAGTTAATGCAGGTTGGCAAGGTTGCATAGCAGTAAAGGCCA
GTCAACCTGTGACTTGTACTACAAAGGTAGCAAGGCTCCGTACAAGGGTACTCATGAGCA
AAGCTTGTGTAGCCAGAGTCGAGCAGTAAAGACTTCAACACTTTGACATTTGTGCTTGGA
TTAGCAATTGGAGGGCAAAGCTTAAATTAATAAGAAGCATGCATAGAAGCTCGATTCTTT
GTTGATCATCGGCGACAAGGTTGTTTTAAATTTTTCTCGACCAAGGTGACGTAATAATTA
CTTGCATACAATATACCTTTTAGGTTGGCCTACAAGGTCATTGGCTCATTCTGCCCTTTG
ACATGCGA
■■Homology search results ■■ -
sp_hit_id Q6HPZ0
Definition sp|Q6HPZ0|RECR_BACHK Recombination protein recR OS=Bacillus thuringiensis subsp. konkukian
Align length 44
Score (bit) 30.4
E-value 5.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915655|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_B09.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6HPZ0|RECR_BACHK Recombination protein recR OS=Bacillus thur...    30   5.9  
sp|Q63HE8|RECR_BACCZ Recombination protein recR OS=Bacillus cere...    30   5.9  
sp|Q81JB9|RECR_BACCR Recombination protein recR OS=Bacillus cere...    30   5.9  
sp|Q73FI4|RECR_BACC1 Recombination protein recR OS=Bacillus cere...    30   5.9  
sp|Q81W16|RECR_BACAN Recombination protein recR OS=Bacillus anth...    30   5.9  
sp|A0R899|RECR_BACAH Recombination protein recR OS=Bacillus thur...    30   5.9  

>sp|Q6HPZ0|RECR_BACHK Recombination protein recR OS=Bacillus
           thuringiensis subsp. konkukian GN=recR PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 KVLKSLLLDSGYTSFAHEYPCTEPCYLCSTSHRLTGLYCYATLP 213
           K L +   D  Y S        +PCY+C+ SHR   + C    P
Sbjct: 45  KALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEP 88


>sp|Q63HE8|RECR_BACCZ Recombination protein recR OS=Bacillus cereus
           (strain ZK / E33L) GN=recR PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 KVLKSLLLDSGYTSFAHEYPCTEPCYLCSTSHRLTGLYCYATLP 213
           K L +   D  Y S        +PCY+C+ SHR   + C    P
Sbjct: 45  KALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEP 88


>sp|Q81JB9|RECR_BACCR Recombination protein recR OS=Bacillus cereus
           (strain ATCC 14579 / DSM 31) GN=recR PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 KVLKSLLLDSGYTSFAHEYPCTEPCYLCSTSHRLTGLYCYATLP 213
           K L +   D  Y S        +PCY+C+ SHR   + C    P
Sbjct: 45  KALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEP 88


>sp|Q73FI4|RECR_BACC1 Recombination protein recR OS=Bacillus cereus
           (strain ATCC 10987) GN=recR PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 KVLKSLLLDSGYTSFAHEYPCTEPCYLCSTSHRLTGLYCYATLP 213
           K L +   D  Y S        +PCY+C+ SHR   + C    P
Sbjct: 45  KALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEP 88


>sp|Q81W16|RECR_BACAN Recombination protein recR OS=Bacillus
           anthracis GN=recR PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 KVLKSLLLDSGYTSFAHEYPCTEPCYLCSTSHRLTGLYCYATLP 213
           K L +   D  Y S        +PCY+C+ SHR   + C    P
Sbjct: 45  KALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEP 88


>sp|A0R899|RECR_BACAH Recombination protein recR OS=Bacillus
           thuringiensis (strain Al Hakam) GN=recR PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 344 KVLKSLLLDSGYTSFAHEYPCTEPCYLCSTSHRLTGLYCYATLP 213
           K L +   D  Y S        +PCY+C+ SHR   + C    P
Sbjct: 45  KALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEP 88
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915655|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_B09.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******