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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915656
Clone id YMU001_000074_B10
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGCAAGAGCAGCTTGGGCTGAGGGGGAGTGCTGATGTGGAGCTGGGCCGCATAGTGGC
CAGAGGTGTCAAGCCAAACCTCTGCTAGGAGTCCATGCTCTGCAGCAGCAGCAACAACGC
TTGCAACAATATACAACAAGGATAGCTAGCACAAACCTCATTTTGAGCTGATCTGGAGTC
TTTTTGATAAATATGTTGAATCATGATAATTCATGAGTTTTGTAGTCATCAGGAGCTCAA
GGAAGCAGAATGTGTTCGCATGTCTGTGTCTGTTTACTAAATGTATCAAGATTATAAGGT
TCTGCATTATGGTCTGCCATTGGTGTGCAGCTACATCATGACTTATGATATTTGTAAAGT
TTGTCAAGCTACTCAAAGCTAGCATTCAAACTGTATTTTCTATTATGCCGACTTCGAAAG
GTCCAAAAATAGTGGCCTTAATGGCATCAATATTCTCAGTTCAGGGCTATGGGAGGTGAT
GCATGGCATCTTGGTGGGGAGAAAAGGTCCACTTTGTCTTCTCTACACTGGAGTAAAGCT
GTTGATACAATTCAGATG
■■Homology search results ■■ -
sp_hit_id P0C6V1
Definition sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM)
Align length 42
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915656|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_B10.
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavir...    33   1.2  
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavir...    33   1.2  
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronaviru...    33   1.2  
sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus gen...    31   3.6  
sp|O92531|POLG_HCVVO Genome polyprotein OS=Hepatitis C virus gen...    31   4.7  
sp|Q2GK24|ENO_ANAPZ Enolase OS=Anaplasma phagocytophilum (strain...    31   4.7  
sp|O92529|POLG_HCVT5 Genome polyprotein OS=Hepatitis C virus gen...    30   6.1  
sp|Q6NRB9|K0090_XENLA Uncharacterized protein KIAA0090 homolog O...    30   6.1  
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronaviru...    30   8.0  
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronav...    30   8.0  
sp|O92530|POLG_HCVVN Genome polyprotein OS=Hepatitis C virus gen...    30   8.0  
sp|Q68798|POLG_HCVJL Genome polyprotein OS=Hepatitis C virus gen...    30   8.0  
sp|Q5I2N3|POLG_HCV6A Genome polyprotein OS=Hepatitis C virus gen...    30   8.0  
sp|Q5ZJH9|DKC1_CHICK H/ACA ribonucleoprotein complex subunit 4 O...    30   8.0  

>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
            (strain JHM) GN=1a PE=1 SV=1
          Length = 4474

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 329  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 454
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4431 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4472


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
            (strain A59) GN=1a PE=1 SV=1
          Length = 4468

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 329  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 454
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4425 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4466


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
            (strain 2) GN=1a PE=3 SV=1
          Length = 4416

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 329  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 454
            SY++T+D+C+VC   +    +C+   + F+    + LNG  +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus genotype
            6a (isolate EUHK2) PE=3 SV=3
          Length = 3018

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 431  SGLNGINILSSGLWEVMHG----ILVGRKGPLCLLYTGVKL 541
            + +NG+      +W V HG     L G KGP+C +YT V L
Sbjct: 1076 TSINGV------MWTVYHGPGFKTLAGPKGPVCQMYTNVDL 1110


>sp|O92531|POLG_HCVVO Genome polyprotein OS=Hepatitis C virus genotype
            6k (isolate VN405) PE=3 SV=3
          Length = 3016

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = +2

Query: 467  LWEVMHGI----LVGRKGPLCLLYTGV 535
            LW V HG     L G KGP+C +YT V
Sbjct: 1080 LWTVYHGAGSKTLAGPKGPICQMYTNV 1106


>sp|Q2GK24|ENO_ANAPZ Enolase OS=Anaplasma phagocytophilum (strain
           HZ) GN=eno PE=3 SV=1
          Length = 429

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 436 ATIFGPFEVGIIENTV*MLALSSLTNFTNIISH 338
           A +  P ++G +  T+  + L+S++NF +I+SH
Sbjct: 337 AVLIKPNQIGTLSETIEAIRLASMSNFNSIVSH 369


>sp|O92529|POLG_HCVT5 Genome polyprotein OS=Hepatitis C virus genotype
            6b (isolate Th580) PE=3 SV=3
          Length = 3019

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = +2

Query: 467  LWEVMHGI----LVGRKGPLCLLYTGV 535
            LW V HG     L G KGP+C +YT V
Sbjct: 1083 LWTVYHGAGSKNLAGPKGPVCQMYTNV 1109


>sp|Q6NRB9|K0090_XENLA Uncharacterized protein KIAA0090 homolog
           OS=Xenopus laevis PE=2 SV=1
          Length = 987

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 359 VCQATQS*HSNCIFYYADFERSKNSGLN-GINILSSGLWEVM 481
           V Q  Q  HS   FY  D E+ K SGL    ++ +  +WEV+
Sbjct: 652 VLQQLQELHSTIFFYLVDVEKGKLSGLRLNKDLSTEEIWEVL 693


>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus
            OC43 GN=1a PE=3 SV=1
          Length = 4383

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 329  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 454
            SY++T+D+C+VC   +    +C+      +    + LNG  +
Sbjct: 4340 SYVLTHDVCRVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGV 4381


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain A59) GN=rep PE=1 SV=1
          Length = 7176

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 329  SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGI 448
            SY++T+D+C+VC   +    +C+   + F+    + LN I
Sbjct: 4425 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNRI 4464
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915656|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_B10.
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******