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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915658
Clone id YMU001_000074_B12
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAGATAGAGCATCCTCTATCACAAGCGCTGTTCTTCTGTGACGCAGTATGCTCCACTA
TTAATAAAAAAAGAACAGTTATTGAGCCCATGTTGTATTGCTGCATGGCAAGAGTAAAAA
CTATATAGAATGATACCTATGTATAGCACTTCCTCTTCGGGTGGGTACTCCTTATCCGGG
TAGCCCAGCCACCAAGGACACTTGAGCCACGTTCCCTTTGGCTGCAAGTCGCCTATCCAC
TCGTCTGGATATAAGCCCGTCTCCTCTCTCTCCGACATGCACCATGCATCACTGGGGTGC
TCGGGAATGGGAAAGACAAGAGCATCTCTCCACCATCTACAGGACAAACCACAATGTTTT
GAGCCACCAAGAACAAGATTAGTGTATCCTACTACATTCTTAATTTGTCAATTAAAGATG
TCAAACCTGTACAACAAGCATCGTGCCGTGCAAGCAAAGTGGGGTTGCTCTTCGGGATCC
TGTGTGGACTTGATCCGAGCACTCCACTTCTTGAAGGCCTTGTCAAAGTGCTTGAGTCTG
TATGTCAGTATTGTGTGGGCAAGTGTGAAACCATGCCTACC
■■Homology search results ■■ -
sp_hit_id Q5ZJF6
Definition sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 OS=Gallus gallus
Align length 67
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915658|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_B12.
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10 ...    33   1.0  
sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116, mitocho...    31   5.1  
sp|A6UW87|NIKR_META3 Putative nickel-responsive regulator OS=Met...    30   8.7  

>sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10
           OS=Gallus gallus GN=DDX10 PE=2 SV=1
          Length = 875

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 312 KDKSISPPSTGQTTMF*ATKNKISVSYYILNLSIKDVKPVQQASCRASKVGLLFGILCGL 491
           K K  +P +  Q  +    ++KI+V Y  L   +K    V  ASC+  +V  LF + C L
Sbjct: 283 KAKFSTPATLDQNYIVCELQHKINVLYSFLRSHLKKKSIVFFASCK--EVQYLFRVFCKL 340

Query: 492 DPSTPLL 512
            P  P+L
Sbjct: 341 QPGLPVL 347


>sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116,
           mitochondrial OS=Saccharomyces cerevisiae GN=MSS116 PE=1
           SV=1
          Length = 664

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
 Frame = +1

Query: 202 LSHVPFGCKSPIHSSGYKPVSSLSDMHHASLGCSGMGKTRASL-----HHLQDKPQCFEP 366
           ++ + F   +P+     KP+ S  D    +   +G GKT A L     H +  K      
Sbjct: 121 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYM 180

Query: 367 PRTRLVYPTTFLICQLKMSNLYNKHRAVQAKWGCSSGSCVDLIRALHFLKALSKCLSLYV 546
            +  +V PT  L  Q++        +     +G    +CV L+    F  A++K   L  
Sbjct: 181 VKAVIVAPTRDLALQIEA----EVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP 236

Query: 547 SIVWAS 564
           +IV A+
Sbjct: 237 NIVIAT 242


>sp|A6UW87|NIKR_META3 Putative nickel-responsive regulator
           OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
           BAA-1280) GN=Maeo_1182 PE=3 SV=1
          Length = 141

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 288 CMVHVGERGDGLISRRVDRRLAAKGNVAQVSLVAGLPG*GVP 163
           CM  V  RGD  I R +  RL ++  V QV L   +PG  +P
Sbjct: 99  CMEVVIVRGDAKIIRELTDRLTSQKGVKQVKLNVMVPGGNIP 140
tr_hit_id A4AIW0
Definition tr|A4AIW0|A4AIW0_9ACTN Putative uncharacterized protein OS=marine actinobacterium PHSC20C1
Align length 101
Score (bit) 35.8
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915658|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_B12.
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4AIW0|A4AIW0_9ACTN Putative uncharacterized protein OS=marin...    36   1.8  
tr|B4DTL3|B4DTL3_HUMAN cDNA FLJ53192, highly similar to Homo sap...    36   1.8  
tr|Q1D148|Q1D148_MYXXD Putative helicase OS=Myxococcus xanthus (...    35   3.0  
tr|A2FFQ7|A2FFQ7_TRIVA Putative uncharacterized protein OS=Trich...    35   3.0  
tr|A6QPN3|A6QPN3_BOVIN ZNF777 protein (Fragment) OS=Bos taurus G...    35   4.0  
tr|Q4UDK6|Q4UDK6_THEAN Putative uncharacterized protein OS=Theil...    35   4.0  
tr|A6PUG6|A6PUG6_9BACT Putative uncharacterized protein OS=Victi...    34   5.2  
tr|B4ME14|B4ME14_DROVI GJ17675 OS=Drosophila virilis GN=GJ17675 ...    34   5.2  
tr|A7PMH2|A7PMH2_VITVI Chromosome chr14 scaffold_21, whole genom...    33   8.8  
tr|O16722|O16722_CAEEL Putative uncharacterized protein T07D3.5 ...    33   8.8  

>tr|A4AIW0|A4AIW0_9ACTN Putative uncharacterized protein OS=marine
           actinobacterium PHSC20C1 GN=A20C1_11146 PE=4 SV=1
          Length = 277

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
 Frame = +3

Query: 291 TGVLGNGKDKSISPPSTGQTTMF*ATKNKIS-------VSYYILNLSIKDVKPVQQASCR 449
           TG +  G +  I+ P+ G+  +  A K KIS       V + I  LS+ +   +QQ    
Sbjct: 114 TGSMNFGNETFITSPAAGREVIARAQKQKISLEVEAFDVGHIISALSLIEKGILQQPL-- 171

Query: 450 ASKVGLLFGILCGLDPSTPLLEGLVKVLESVCQY---CVGK 563
             +V L+FG+  G+D S   LE +++ L     +   CVG+
Sbjct: 172 --RVNLVFGVSGGMDASPEALEAMLRPLPPETFWTVTCVGR 210


>tr|B4DTL3|B4DTL3_HUMAN cDNA FLJ53192, highly similar to Homo sapiens
            Rho guanine nucleotide exchange factor (GEF) 10-like,
            transcript variant 1, mRNA OS=Homo sapiens PE=2 SV=1
          Length = 1042

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +3

Query: 405  LSIKDVKPVQQASCRASKVGLLFGILCGLDPS-TPLLEGLVKVLESVCQYCVGKC 566
            L  K+ KP    +C AS V L++  L GL  S TPLLEG V+V  SVC+ CVG C
Sbjct: 990  LKAKNTKP---HNCLASPVSLVWA-LAGLQGSHTPLLEGCVRV--SVCE-CVGWC 1037


>tr|Q1D148|Q1D148_MYXXD Putative helicase OS=Myxococcus xanthus
           (strain DK 1622) GN=MXAN_5482 PE=4 SV=1
          Length = 706

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 217 FGCKSPIHSSGYKPVSSLSDMHHASLGCSGMGKTRASLHHLQ----DKPQCFEPPRTRLV 384
           FG  + + +  Y+ +S+  D     LG +G GKT  +LH L     D P+ F   R +L+
Sbjct: 227 FGVTAMLDAEQYEALSTGPDRPLLVLGSAGSGKTTVALHRLAKLAFDDPRTFPQARMKLI 286

Query: 385 YP 390
            P
Sbjct: 287 VP 288


>tr|A2FFQ7|A2FFQ7_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_205270 PE=4 SV=1
          Length = 428

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 125 YSFYSCHAAIQHGLNNCSFFINSGAYCVTE 36
           YSFY C    +  L+NCSF  N G++C  E
Sbjct: 58  YSFYCCSHLSEADLSNCSFLENIGSFCFAE 87


>tr|A6QPN3|A6QPN3_BOVIN ZNF777 protein (Fragment) OS=Bos taurus
           GN=ZNF777 PE=2 SV=1
          Length = 532

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 308 IPEHPSDAWCMSEREETGLYPDEWIGDLQPKGTWLKCPWWLGYP 177
           +P+H      +S R ETGLYP    G+L P+G     P  LG P
Sbjct: 168 LPQHLQSLGQLSGRYETGLYPTPLPGELSPEGEESPPPLQLGNP 211


>tr|Q4UDK6|Q4UDK6_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA11600 PE=4 SV=1
          Length = 876

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 578 RHGFTLAHTILTYRLKHFDKAFKKWSARIKSTQDPEE 468
           +HG+ L  T +T RL   D +F+  SAR++  + PEE
Sbjct: 732 KHGYVLEETFMTKRLSSLDISFRYESARLRQIKVPEE 768


>tr|A6PUG6|A6PUG6_9BACT Putative uncharacterized protein
           OS=Victivallis vadensis ATCC BAA-548 GN=VvadDRAFT_0417
           PE=4 SV=1
          Length = 419

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 323 ALVFPIPEHPSDAWCMSEREETGLYPDEWIGDLQPKGTWLKCP 195
           A+   +P+H  DAWC  E+ E    PD +I  +     WLK P
Sbjct: 145 AVAVDLPQHEIDAWCQIEKVER--KPDHFIIHVSILNAWLKAP 185


>tr|B4ME14|B4ME14_DROVI GJ17675 OS=Drosophila virilis GN=GJ17675
           PE=4 SV=1
          Length = 1304

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +1

Query: 241 SSGYKPVSSLSDMHHASLGCSGMGKTRASLHHLQDKPQCFEPPRTRLVYPTTFLICQLKM 420
           S  YKP       H+A+L   G  K +      Q K      P+  LV+PT  L  QLK+
Sbjct: 632 SIDYKPYKP--KFHNAALYAPGSSKEQQQQQQQQQK---LPAPQPTLVHPTLSLSTQLKL 686

Query: 421 SNLYNKHR 444
           +N  N H+
Sbjct: 687 NNHINSHQ 694


>tr|A7PMH2|A7PMH2_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020821001
           PE=3 SV=1
          Length = 344

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
 Frame = +3

Query: 330 PPSTGQTTMF*ATKNKISVSYYILNL-SIKDVKPVQQASCRASKVGLLF--GILCGLD-- 494
           PP TG++TM  A  N +    Y L L S+KD   +++     S   ++    I C LD  
Sbjct: 140 PPGTGKSTMISAMANLLGYDVYDLELTSVKDNTELRRLLIEISSRSIIVIEDIDCSLDEE 199

Query: 495 -------PSTPLLEGLVKVLESVCQYCVGK 563
                  PS   L GL+  ++ +   C G+
Sbjct: 200 KAKEERKPSNVTLSGLLNFIDGLWSTCGGE 229


>tr|O16722|O16722_CAEEL Putative uncharacterized protein T07D3.5
           OS=Caenorhabditis elegans GN=T07D3.5 PE=2 SV=1
          Length = 263

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 308 IPEHPSDAWCMSEREETGLYPDEWIGDLQPKGTWLK 201
           +PE+P D + M +  E G     W+G L P GT  K
Sbjct: 23  LPEYPIDVFMMYKGVENGTLTHHWVGGLSPDGTKYK 58