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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915660
Clone id YMU001_000074_C03
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCGAGTCCAGCAATCTTCTCACCCTATATCCACCCCCAGAATCTGGAATGTGTGCATAA
CAAAAACACCCAAAAGTTCTAAAATGCAAGACTGAAGGCTCCTTAACTGAGTAGACTTCT
TGAGTTGTCATGCCCTATAAATCCGTGTTGAAACTCTTTAAATGTAGAGGGAATGAACTG
TAGAGTTGCAACCCAGCTGATGTTTACCCTGCACGGCTTTGTAGACCTGCCAAGTTGGCA
TCTTCCTCATTGTTCTGTCGTTTGGCATTCCGAAGGGAGGCAGCAACATGTAAAACCATG
TCCAAATTCGGAGTCAGGGCTTTGATTTGGGGCCAGTTCACAGGAGATGAACCGTGAGGG
GTCAGGATGCCGTAAGACATTATCATTGTTCTTTGTAAGGGGAGTGCTTTGTGCTGAATG
CGTCGAAACTAAAACGTCTCCAAACTACTTCATTTCTTGGTCCTCCGGATTGGGTCATGC
TATTATAAGCAAGCATCCAATGATCCAGAGAGGAATTGGCAGTAATTTATGTTTTGTGAA
AGTAATCATATTCAT
■■Homology search results ■■ -
sp_hit_id Q80QL5
Definition sp|Q80QL5|CAPSD_PCV1 Capsid protein OS=Porcine circovirus 1
Align length 25
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915660|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_C03.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80QL5|CAPSD_PCV1 Capsid protein OS=Porcine circovirus 1 GN=C...    33   1.2  
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    31   4.6  
sp|Q8C3Y4|KNTC1_MOUSE Kinetochore-associated protein 1 OS=Mus mu...    31   4.6  
sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max...    30   7.9  

>sp|Q80QL5|CAPSD_PCV1 Capsid protein OS=Porcine circovirus 1 GN=Cap
           PE=3 SV=1
          Length = 233

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 176 NCRVATQLMFTLHGFVDLPSWHLPH 250
           NCR++T+ + T+ G    PSWH+ H
Sbjct: 48  NCRLSTEFVLTIKGGFSQPSWHVNH 72


>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 122 QEVYSVKEPSVLHFRTFGCFCYAHIP 45
           + V++ KE S  H + FGC  +AH+P
Sbjct: 635 ERVWTNKEVSYSHLKVFGCRAFAHVP 660


>sp|Q8C3Y4|KNTC1_MOUSE Kinetochore-associated protein 1 OS=Mus
            musculus GN=Kntc1 PE=2 SV=2
          Length = 2207

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
 Frame = +2

Query: 116  LLELSCPINP-----C*NSLNVEGMNCRVATQL--MFTLHGFV--DLPSWHLPHCSVVWH 268
            LL  SCP+ P     C +SL V  + C V+  L  M     +V  DLP++ L   +++ H
Sbjct: 2025 LLSASCPLRPSQLADCCDSL-VAILECPVSDDLDMMGVAKQYVQLDLPAFALTCLTLMPH 2083

Query: 269  SEGRQQHVKPCPNS 310
            SE R Q +K   NS
Sbjct: 2084 SEKRHQQIKNFLNS 2097


>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max
           GN=AUX28 PE=2 SV=1
          Length = 243

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -2

Query: 416 QHKALPLQRTMIMSYGILTPHGSSPVNWPQIKALTPNLDMVLHVAASLRNAKRQNNEEDA 237
           +HK LP ++T++ +     P  +  V WP +++   N+   L V  S+     +N+  +A
Sbjct: 67  KHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNM---LAVQKSVGEESEKNSSPNA 123

Query: 236 N 234
           +
Sbjct: 124 S 124
tr_hit_id Q9LH44
Definition tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=Arabidopsis thaliana
Align length 44
Score (bit) 47.0
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915660|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_C03.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=A...    47   7e-04
tr|A5B8H9|A5B8H9_VITVI Putative uncharacterized protein OS=Vitis...    44   0.008
tr|A5B557|A5B557_VITVI Putative uncharacterized protein OS=Vitis...    43   0.010
tr|A5ALW9|A5ALW9_VITVI Putative uncharacterized protein OS=Vitis...    43   0.013
tr|A5BFG0|A5BFG0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.017
tr|A5B2D9|A5B2D9_VITVI Putative uncharacterized protein OS=Vitis...    42   0.017
tr|A5AFP3|A5AFP3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.017
tr|Q9M1C6|Q9M1C6_ARATH Putative uncharacterized protein T2O9.150...    42   0.022
tr|A5BZM8|A5BZM8_VITVI Putative uncharacterized protein OS=Vitis...    42   0.029
tr|A5BHT9|A5BHT9_VITVI Putative uncharacterized protein OS=Vitis...    42   0.029
tr|A5B506|A5B506_VITVI Putative uncharacterized protein OS=Vitis...    41   0.037
tr|A5AX45|A5AX45_VITVI Putative uncharacterized protein OS=Vitis...    41   0.049
tr|A5B902|A5B902_VITVI Putative uncharacterized protein OS=Vitis...    40   0.064
tr|B8LKX7|B8LKX7_PICSI Putative uncharacterized protein OS=Picea...    40   0.083
tr|A5C546|A5C546_VITVI Putative uncharacterized protein OS=Vitis...    40   0.083
tr|A5BLB0|A5BLB0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|A5B1F3|A5B1F3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.19 
tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana G...    39   0.24 
tr|Q9SFE1|Q9SFE1_ARATH T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1     39   0.24 
tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis tha...    39   0.24 
tr|Q9M197|Q9M197_ARATH Copia-type reverse transcriptase-like pro...    39   0.24 
tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative OS=Arabi...    39   0.24 
tr|A5B3I2|A5B3I2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.24 
tr|Q0PEL6|Q0PEL6_BETVU Putative integrase OS=Beta vulgaris PE=4 ...    38   0.32 
tr|A5BIJ3|A5BIJ3_VITVI Putative uncharacterized protein OS=Vitis...    38   0.32 
tr|A5B0W4|A5B0W4_VITVI Putative uncharacterized protein OS=Vitis...    38   0.32 
tr|A2I5F8|A2I5F8_BETVU Integrase OS=Beta vulgaris PE=4 SV=1            38   0.32 
tr|Q9SHL9|Q9SHL9_ARATH Putative retroelement pol polyprotein OS=...    38   0.41 
tr|Q849B8|Q849B8_ASTYP Putative copia-type polyprotein OS=Aster ...    37   0.54 
tr|Q9ZVE4|Q9ZVE4_ARATH Putative retroelement pol polyprotein OS=...    37   0.54 

>tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1499

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = -2

Query: 134 GMTTQEVYSVKEPSVLHFRTFGCFCYAHIPDSGGGYRVRRLLDS 3
           G+T  E++S K+PSV H + FGC CY HIPD       RR LD+
Sbjct: 667 GVTPMEIWSGKKPSVDHLKVFGCVCYIHIPD-----EKRRKLDT 705


>tr|A5B8H9|A5B8H9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032452 PE=4 SV=1
          Length = 1338

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = -2

Query: 131 MTTQEVYSVKEPSVLHFRTFGCFCYAHIPDS 39
           MT +E +S  +PSV HFR FGC  + HIPDS
Sbjct: 591 MTPEEAWSGSKPSVDHFRVFGCISHVHIPDS 621


>tr|A5B557|A5B557_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001759 PE=4 SV=1
          Length = 808

 Score = 43.1 bits (100), Expect = 0.010
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -2

Query: 131 MTTQEVYSVKEPSVLHFRTFGCFCYAHIPD 42
           +T ++ ++ ++PSV HFR FGC  YAHIPD
Sbjct: 191 VTPEZAWNGRKPSVNHFRIFGCIXYAHIPD 220


>tr|A5ALW9|A5ALW9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042489 PE=4 SV=1
          Length = 1246

 Score = 42.7 bits (99), Expect = 0.013
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = -2

Query: 131 MTTQEVYSVKEPSVLHFRTFGCFCYAHIPD 42
           +T +E ++  +PSV HFR FGC  YAHIPD
Sbjct: 636 VTPEEAWNGXKPSVNHFRIFGCIAYAHIPD 665


>tr|A5BFG0|A5BFG0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017285 PE=4 SV=1
          Length = 672

 Score = 42.4 bits (98), Expect = 0.017
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 158 KSFNTDL*GMTTQEVYSVKEPSVLHFRTFGCFCYAHIPD 42
           KS    +  MT +E +S ++P V HF+ FGC  YAH+P+
Sbjct: 519 KSLTFSVQNMTPEEAWSGRKPVVNHFKIFGCIAYAHVPN 557


>tr|A5B2D9|A5B2D9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029930 PE=4 SV=1
          Length = 486

 Score = 42.4 bits (98), Expect = 0.017
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -2

Query: 131 MTTQEVYSVKEPSVLHFRTFGCFCYAHIPDS 39
           MT +E +S  +PSV HFR FGC  + HIPD+
Sbjct: 97  MTPEEAWSRSKPSVDHFRVFGCISHVHIPDN 127


>tr|A5AFP3|A5AFP3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023209 PE=4 SV=1
          Length = 1202

 Score = 42.4 bits (98), Expect = 0.017
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -2

Query: 131 MTTQEVYSVKEPSVLHFRTFGCFCYAHIPD 42
           MT +E +S  +P+V HF+ FGC  YAH+PD
Sbjct: 570 MTPEEAWSGXKPAVDHFKIFGCIAYAHVPD 599


>tr|Q9M1C6|Q9M1C6_ARATH Putative uncharacterized protein T2O9.150
           OS=Arabidopsis thaliana GN=T2O9.150 PE=4 SV=1
          Length = 1339

 Score = 42.0 bits (97), Expect = 0.022
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -2

Query: 134 GMTTQEVYSVKEPSVLHFRTFGCFCYAHIPD 42
           GMT +E +S ++P V +FR FGC  Y HIPD
Sbjct: 645 GMTPEEAWSGRKPVVEYFRVFGCIGYVHIPD 675


>tr|A5BZM8|A5BZM8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006048 PE=4 SV=1
          Length = 916

 Score = 41.6 bits (96), Expect = 0.029
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = -2

Query: 128 TTQEVYSVKEPSVLHFRTFGCFCYAHIPDS 39
           T++E +S  +PSV HFR FGC  + H+P+S
Sbjct: 356 TSEEAWSXVKPSVEHFRVFGCISHVHVPBS 385


>tr|A5BHT9|A5BHT9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016610 PE=4 SV=1
          Length = 1021

 Score = 41.6 bits (96), Expect = 0.029
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -2

Query: 128 TTQEVYSVKEPSVLHFRTFGCFCYAHIPDS 39
           T++E +S  +PSV HFR FGC  + H+PDS
Sbjct: 357 TSEEAWSGVKPSVEHFRVFGCISHVHVPDS 386