BP915662
Clone id YMU001_000074_C05
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTACTGTTGATTGTCTTTGTATGTGGCTGACTGCTGTCTTGGTGACGACAGTTTAAGAT
TAGCTTGTGTCAGTGTATTATCTTTCATGAAAAATGCTAGTTGAAGAGGTTTATTGCCTG
CGCTTTGCTTTTGTTTAGGGTAAGGATACTCGTATCTGTTCCCTTAGTTATGAAGTAGGA
GATAGTATATGCATATTTGAGTAACCTCTGGATTTGTTTTACGTTGGAAGATGTTCATTA
ACTCAACAGTAGCATAACGTGTGACTATGTGGTAGTCTTGTGATATGGTACTGTCCATTT
AGAAGTGTCTATTGGCTGCTCGCTAGCTGGGTCTTCCATATTGATTGCTGGATCTAGCTT
TACTTTACATTTGGTAAGAGTCTGTTGACCTTTGATGCCTATAGATTGAGAAGTTCGCTT
AGATGTAGTTTTGGGACTGTTGCATGTTTCCATAGTAGTTTTGTTATGTTTCTGC
■■Homology search results ■■ -
sp_hit_id P97350
Definition sp|P97350|PKP1_MOUSE Plakophilin-1 OS=Mus musculus
Align length 45
Score (bit) 29.3
E-value 9.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915662|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_C05.
(475 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P97350|PKP1_MOUSE Plakophilin-1 OS=Mus musculus GN=Pkp1 PE=2 ... 29 9.4
sp|Q9XHR2|EIF3A_MAIZE Eukaryotic translation initiation factor 3... 29 9.4
sp|O27322|ASSY_METTH Argininosuccinate synthase OS=Methanobacter... 29 9.4

>sp|P97350|PKP1_MOUSE Plakophilin-1 OS=Mus musculus GN=Pkp1 PE=2
SV=1
Length = 728

Score = 29.3 bits (64), Expect = 9.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2

Query: 432 KTTSKRTSQSIGIKGQQTLTKCKVKLDPAINMEDPASEQPIDTSK 298
KTT R S GQ+ + KC V+ + +DP PI +K
Sbjct: 179 KTTQNRCSFYSTCSGQKAVKKCPVRPPSCTSKQDPVYVPPISCNK 223


>sp|Q9XHR2|EIF3A_MAIZE Eukaryotic translation initiation factor 3
subunit A OS=Zea mays GN=TIF3A1 PE=2 SV=1
Length = 962

Score = 29.3 bits (64), Expect = 9.4
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1

Query: 277 LVIWYCPFRSVYWLLASWVFHIDCWI*LY---FTFGKSLLTFDAYRLRSSLRCSFGTVAC 447
LV++Y ++W+ S ++H W+ L+ ++ K+L D + SS+ + +V+
Sbjct: 273 LVVYYAKLTEIFWISDSHLYHAYAWLKLFNLQKSYNKNLSQKDLQLIASSVLLAALSVSP 332

Query: 448 FHSSFVMF 471
+ + F
Sbjct: 333 YDKKYGAF 340


>sp|O27322|ASSY_METTH Argininosuccinate synthase OS=Methanobacterium
thermoautotrophicum GN=argG PE=3 SV=1
Length = 399

Score = 29.3 bits (64), Expect = 9.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2

Query: 339 MEDPASEQPIDTSKWTVPYHKT 274
+EDP E P D +WT P H+T
Sbjct: 190 LEDPMVEPPEDAFEWTKPIHET 211


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915662|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_C05.
(475 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******