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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915671
Clone id YMU001_000074_D06
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATGGTCATAACCCCAGTCCTGGACCATTTTCAATTATCACATGAATGGTCTTCTCAATA
TTGTGTCATAATTGTTCTTCTTGCCATAATCAACAATAGCAAAGGTTTTCTCATATTCAA
TGCCACAAGAAGTAACAACTACTTTTTTTAGTAGTCCTATGGGCCTTTCCATGTATCCAT
CTACAAGCTTTAGTTTCATTCTAATAGCCCTCATTGCTGGTTTTTCGCATTTTCTCCAGA
TCATTTCATTGCGATGCAACACCAAATCCACTGTCAAGGGTTGCCATGGTTTTTACATCT
TGAAATTCCATAGGAAGAGTGTGTTCCCATATTCTCCCTCATAATACTCTCCAACCTTGT
TTAATAGCACTCGTATAGTGTCGAGATGAGGCATTTCCAGCTCTTTGATCCCTTCCTTGA
TTTGAGGCATTGGTTTTTTAACACCAAATTTCTCTAGGTATTTTTCCACAGTAGCCCACA
TGTCAGGTCATATTCTACGCAACTTGGCCAATGTTTACGTACAATTGACAGGTGTCGACA
AAATGT
■■Homology search results ■■ -
sp_hit_id Q9CPJ2
Definition sp|Q9CPJ2|MLTF_PASMU Membrane-bound lytic murein transglycosylase F OS=Pasteurella multocida
Align length 78
Score (bit) 33.1
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915671|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_D06.
         (546 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CPJ2|MLTF_PASMU Membrane-bound lytic murein transglycosylas...    33   0.89 
sp|A3GGS6|UTP10_PICST U3 small nucleolar RNA-associated protein ...    31   4.4  
sp|Q3UHH8|GL8D3_MOUSE Glycosyltransferase 8 domain-containing pr...    30   5.8  
sp|P22434|PDE1_YEAST 3',5'-cyclic-nucleotide phosphodiesterase 1...    30   7.6  
sp|P45908|YQAK_BACSU Uncharacterized protein yqaK OS=Bacillus su...    30   9.9  
sp|Q6A070|F179B_MOUSE Protein FAM179B OS=Mus musculus GN=Fam179b...    30   9.9  

>sp|Q9CPJ2|MLTF_PASMU Membrane-bound lytic murein transglycosylase F
           OS=Pasteurella multocida GN=mltF PE=3 SV=2
          Length = 492

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = -3

Query: 319 LFLWNFKM*KPWQPLTVDLVLHRNEMIWRKCEKPAMRAIRMKLKLVDGYMERPIGLLKKV 140
           L LW   M  PWQ +              + E+    AI+ + KLV G +  PI      
Sbjct: 14  LLLWAIDMVFPWQQIM-------------RSEENRYTAIQSRGKLVVGTINNPISYFIDH 60

Query: 139 VVTSCGIEYEKTFAIVDY 86
              + G+EYE + A  DY
Sbjct: 61  AGQAAGLEYELSKAFADY 78


>sp|A3GGS6|UTP10_PICST U3 small nucleolar RNA-associated protein 10
            OS=Pichia stipitis GN=UTP10 PE=3 SV=1
          Length = 1836

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
 Frame = -3

Query: 469  VEKYLEKFGVKKPMPQIKEGIK-----ELEMPHLDTIRVLLNKVG 350
            +++ +E+  ++K +P +  GIK     ELE  +LDT  +++NK G
Sbjct: 1327 IDEKIEESVLEKLLPVLLHGIKKNVDIELEQAYLDTFAIIVNKFG 1371


>sp|Q3UHH8|GL8D3_MOUSE Glycosyltransferase 8 domain-containing
           protein 3 OS=Mus musculus GN=Glt8d3 PE=1 SV=2
          Length = 404

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = -3

Query: 262 VLHRNEMIWRKCEKPAMRAIRMKLK---LVDGYME---RPIGL-LKKVVVTSCGIEYEKT 104
           +LH N  ++   ++PA RA+   L+   L D  +    +P+ L L+K V T CG  Y+  
Sbjct: 326 ILHGNRGVYHDDKQPAFRAVYEALRNCSLEDDSVRSLLKPLELELQKTVHTYCGKTYKIF 385

Query: 103 FAIVDYGKKNNYDT 62
              +    +N YDT
Sbjct: 386 IKQLTKSIRNRYDT 399


>sp|P22434|PDE1_YEAST 3',5'-cyclic-nucleotide phosphodiesterase 1
           OS=Saccharomyces cerevisiae GN=PDE1 PE=1 SV=2
          Length = 369

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = -3

Query: 463 KYLEKFGVKKPMPQIKEGIKE--LEMPHLDTIRVLLNKVGEYYEGEYGNTLFLWNFKM*K 290
           ++ E     K   ++ +GI +  +  PHLD I  L+      YE E      +W      
Sbjct: 103 EHFESANTMKKTYEVFQGITDYYITHPHLDHISGLVVNSPSIYEQENSKKKTIWGL---- 158

Query: 289 PWQPLTVDLVLHR--NEMIWRKCEKPAMRAIRMKLKLVD 179
              P T+D++     N++IW   +  A R+ ++KLK ++
Sbjct: 159 ---PHTIDVLQKHVFNDLIWP--DLTAERSRKLKLKCLN 192


>sp|P45908|YQAK_BACSU Uncharacterized protein yqaK OS=Bacillus
           subtilis GN=yqaK PE=4 SV=1
          Length = 284

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -3

Query: 286 WQPLTVDLVLHRNEMIWRKCEKPAMRAIRMKLKLVDGYMERPIGLLKKVVVTSCGIE-YE 110
           W PLT ++     E+ + K E  A+       +L++G+        K V  T   +E ++
Sbjct: 138 WNPLTEEI-----EIDFEKRESDAVIGYAAYFELINGFR-------KTVYWTKAQVEKHK 185

Query: 109 KTFAIVDYGKKNNYDTILRRPFM**LKMVQDWG 11
           K F+  D+G KN++D +  +  +    ++  WG
Sbjct: 186 KKFSKSDFGWKNDWDAMALKTVL--KAVLSKWG 216


>sp|Q6A070|F179B_MOUSE Protein FAM179B OS=Mus musculus GN=Fam179b PE=2
            SV=2
          Length = 1759

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 466  EKYLEKFGVKKPMPQIKEGIKELEMPHLDTIRV--LLNKVGEYYEGEYGNT 320
            EK LEK+   K +P IKE +K L +  L  I +     K    + G  GNT
Sbjct: 1458 EKLLEKYIPSKDLPYIKESVKNLRLKGLGEIPLDTASAKGRRSHPGSVGNT 1508
tr_hit_id Q7FZS4
Definition tr|Q7FZS4|Q7FZS4_ARATH AT4g07360 protein OS=Arabidopsis thaliana
Align length 150
Score (bit) 36.6
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915671|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_D06.
         (546 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7FZS4|Q7FZS4_ARATH AT4g07360 protein OS=Arabidopsis thaliana...    37   0.89 
tr|Q9C8Q6|Q9C8Q6_ARATH Athila ORF 1, putative; 49840-46364 OS=Ar...    36   1.5  
tr|B2HZX9|B2HZX9_ACIBC Protein-disulfide isomerase OS=Acinetobac...    34   5.8  
tr|B0VQP1|B0VQP1_ACIBS Putative thiol:disulfide interchange prot...    34   5.8  
tr|B0V5R6|B0V5R6_ACIBY Putative thiol:disulfide interchange prot...    34   5.8  
tr|A3M8Y5|A3M8Y5_ACIBT Putative thiol:disulfide interchange prot...    34   5.8  
tr|B7H336|B7H336_ACIBA Thiol:disulfide interchange protein dsbC ...    34   5.8  
tr|Q9SV11|Q9SV11_ARATH Putative uncharacterized protein F4F15.40...    34   5.8  
tr|Q9SHR4|Q9SHR4_ARATH F28L22.4 protein OS=Arabidopsis thaliana ...    33   7.6  
tr|Q9M106|Q9M106_ARATH Putative transposon protein OS=Arabidopsi...    33   7.6  
tr|Q9LPB9|Q9LPB9_ARATH T32E20.1 OS=Arabidopsis thaliana PE=4 SV=1      33   7.6  
tr|Q9C8Q7|Q9C8Q7_ARATH Athila ORF 1, putative; 43045-40843 OS=Ar...    33   7.6  
tr|O81509|O81509_ARATH T7M24.3 protein OS=Arabidopsis thaliana G...    33   7.6  
tr|O65224|O65224_ARATH F7N22.7 protein OS=Arabidopsis thaliana G...    33   7.6  

>tr|Q7FZS4|Q7FZS4_ARATH AT4g07360 protein OS=Arabidopsis thaliana
           GN=F28D6.11 PE=2 SV=1
          Length = 675

 Score = 36.6 bits (83), Expect = 0.89
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
 Frame = -3

Query: 463 KYLEKFGVKKPMPQIKEGIKELEMPHLDTIRVLLNKVGEYYEGE------YGNTLFLWNF 302
           K L++  V  P+ ++   I +   PH D   ++L ++  Y++ +      +   L    F
Sbjct: 368 KQLDEIEVVMPLMEVLNLIPD---PHKDVRNLILERIKMYHDSDDESDALHLELLIRGLF 424

Query: 301 KM*KPWQPLTVDLVLHRNEM---IWRKCEKPAMRAIRMKLKLVDGYMERPIGLLKKVVVT 131
           K  + +     DL    + M   + R+ E    +   + L L D    RP  +LK V V 
Sbjct: 425 K--RTFSDCLCDLGASVSLMPLSVARRLEFIRYKPCDLTLILADRSSRRPFSMLKDVPVM 482

Query: 130 SCGIEYEKTFAIVDYGKKNNYDTILRRPFM 41
             G+E    F ++D   ++    IL RPF+
Sbjct: 483 INGVEVPTDFVVLDMEVEHKDSLILGRPFL 512


>tr|Q9C8Q6|Q9C8Q6_ARATH Athila ORF 1, putative; 49840-46364
           OS=Arabidopsis thaliana GN=T4I21.12 PE=4 SV=1
          Length = 595

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 199 MKLKLVDGYMERPIGLLKKVVVTSCGIEYEKTFAIVDYGKKNNYDTILRRPFM 41
           + L L D    RP GLL+ V V   G+E    F +++  +++N   IL RPF+
Sbjct: 285 LTLILADRTSRRPFGLLEDVPVMINGVEVPIDFVVLEMDEESNDPQILGRPFL 337


>tr|B2HZX9|B2HZX9_ACIBC Protein-disulfide isomerase OS=Acinetobacter
           baumannii (strain ACICU) GN=ACICU_00013 PE=4 SV=1
          Length = 232

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -3

Query: 442 VKKPMPQIK-EGIKELEMPHLDTIRVLLNKVGEYYEGEYGNTLFLWNFKM*KPWQPLTVD 266
           +KK  P +K   I++ EMP L +  +    +   Y GE G  +F+ +    K  + LT D
Sbjct: 29  IKKQYPNLKISNIQKTEMPGLYSANLDQQII---YLGEDGQHMFVGSMIRLKDQKNLTKD 85

Query: 265 LVLHRNEMIWRKCE-KPAMRAIR 200
           LVL +N + W++   K A++ ++
Sbjct: 86  LVLGQNSIDWKQLPLKDAIKTVK 108


>tr|B0VQP1|B0VQP1_ACIBS Putative thiol:disulfide interchange protein
           OS=Acinetobacter baumannii (strain SDF) GN=ABSDF3676
           PE=4 SV=1
          Length = 232

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -3

Query: 442 VKKPMPQIK-EGIKELEMPHLDTIRVLLNKVGEYYEGEYGNTLFLWNFKM*KPWQPLTVD 266
           +KK  P +K   I++ EMP L +  +    +   Y GE G  +F+ +    K  + LT D
Sbjct: 29  IKKQYPNLKISNIQKTEMPGLYSANLDQQII---YLGEDGQHMFVGSMIRLKDQKNLTKD 85

Query: 265 LVLHRNEMIWRKCE-KPAMRAIR 200
           LVL +N + W++   K A++ ++
Sbjct: 86  LVLGQNSIDWKQLPLKDAIKTVK 108


>tr|B0V5R6|B0V5R6_ACIBY Putative thiol:disulfide interchange protein
           OS=Acinetobacter baumannii (strain AYE) GN=ABAYE3889
           PE=4 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -3

Query: 442 VKKPMPQIK-EGIKELEMPHLDTIRVLLNKVGEYYEGEYGNTLFLWNFKM*KPWQPLTVD 266
           +KK  P +K   I++ EMP L +  +    +   Y GE G  +F+ +    K  + LT D
Sbjct: 22  IKKQYPNLKISNIQKTEMPGLYSANLDQQII---YLGEDGQHMFVGSMIRLKDQKNLTKD 78

Query: 265 LVLHRNEMIWRKCE-KPAMRAIR 200
           LVL +N + W++   K A++ ++
Sbjct: 79  LVLGQNSIDWKQLPLKDAIKTVK 101


>tr|A3M8Y5|A3M8Y5_ACIBT Putative thiol:disulfide interchange protein
           OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
           755) GN=A1S_2976 PE=4 SV=2
          Length = 232

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -3

Query: 442 VKKPMPQIK-EGIKELEMPHLDTIRVLLNKVGEYYEGEYGNTLFLWNFKM*KPWQPLTVD 266
           +KK  P +K   I++ EMP L +  +    +   Y GE G  +F+ +    K  + LT D
Sbjct: 29  IKKQYPNLKISNIQKTEMPGLYSANLDQQII---YLGEDGQHMFVGSMIRLKDQKNLTKD 85

Query: 265 LVLHRNEMIWRKCE-KPAMRAIR 200
           LVL +N + W++   K A++ ++
Sbjct: 86  LVLGQNSIDWKQLPLKDAIKTVK 108


>tr|B7H336|B7H336_ACIBA Thiol:disulfide interchange protein dsbC
           OS=Acinetobacter baumannii AB307-0294 GN=ABBFA_003524
           PE=4 SV=1
          Length = 232

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -3

Query: 442 VKKPMPQIK-EGIKELEMPHLDTIRVLLNKVGEYYEGEYGNTLFLWNFKM*KPWQPLTVD 266
           +KK  P +K   I++ EMP L +  +    +   Y GE G  +F+ +    K  + LT D
Sbjct: 29  IKKQYPNLKISNIQKTEMPGLYSANLDQQII---YLGEDGQHMFVGSMIRLKDQKNLTKD 85

Query: 265 LVLHRNEMIWRKCE-KPAMRAIR 200
           LVL +N + W++   K A++ ++
Sbjct: 86  LVLGQNSIDWKQLPLKDAIKTVK 108


>tr|Q9SV11|Q9SV11_ARATH Putative uncharacterized protein F4F15.40
           (Putative uncharacterized protein At3g51930) (At3g51930)
           OS=Arabidopsis thaliana GN=At3g51930 PE=2 SV=1
          Length = 415

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 484 DMWATVEKYLEKFGVKKPMPQIKEGIKELEMPHLDTIRVLLNKVGEYYEGEYGNTLFLW 308
           D   T + YL KF  +    Q +   K L + H D+I  L    G  Y G +  TL +W
Sbjct: 141 DTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISCLAVHAGIIYSGSWDKTLKVW 199


>tr|Q9SHR4|Q9SHR4_ARATH F28L22.4 protein OS=Arabidopsis thaliana
           GN=F28L22.4 PE=4 SV=1
          Length = 478

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 199 MKLKLVDGYMERPIGLLKKVVVTSCGIEYEKTFAIVDYGKKNNYDTILRRPFM 41
           + L L DG +  P GL++ + V    +E    F ++D  +K     IL RPF+
Sbjct: 208 LALLLADGSVAHPHGLIENLPVKIENVEIPTDFVVLDVDEKGKDPLILGRPFL 260


>tr|Q9M106|Q9M106_ARATH Putative transposon protein OS=Arabidopsis
           thaliana GN=AT4g03850 PE=2 SV=1
          Length = 334

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 235 RKCEKPAMRAIRMKLKLVDGYMERPIGLLKKVVVTSCGIEYEKTFAIVDYGKKNNYDTIL 56
           R+ E    R   + L L D    +P G+LK + V   G+E    F ++D   ++    IL
Sbjct: 107 RRLEFIQYRPCDLTLILADRASRKPFGMLKDLPVMINGVEVPIDFVVLDMEVEHKDPLIL 166

Query: 55  RRPFM 41
            RPF+
Sbjct: 167 GRPFL 171