BP915678 |
Clone id |
YMU001_000074_E06 |
Library |
YMU01 |
Length |
470 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000074_E06. |
Accession |
BP915678 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
ATTCGCGGCCGCAGGAATTTTTTTTTTTTGCATGACTGTCAGAATATACAAGGCAATAGG TGAGACATGGAAGACGCATAGTGTGTCAGAATTCAGGATTCACCTCATTAACATACAAAA GCAATCATTGAGCAAGGGCACTGGTGTTGTACACTAAGAGGGCACCACCCAACAAGATAG CGCCGAGGGTAACTGCCCAGATAGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAG AAGTTGACCATTCCTCTGGGACATAGATAGGGCTGTATCCATCGACATTAGCACCATACT TCTTGGTATATTGGTAGACTCCCTTTCCCTTAGCTTTGCGACCAGAGGCATCCAGGTTAC CCTTGAATTTGGTATCGCCGGAAGGTCCCAAGGGAGTTTTGGTCGAGATCTTCTTGACAC CACTTGCCTCGATTCTGAGGGAGCGGGCGGATAGCTTAGGAGAGAGGGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
108 |
Score (bit) |
130.0 |
E-value |
2.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915678|Adiantum capillus-veneris mRNA, clone: YMU001_000074_E06. (441 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 130 2e-30 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 130 2e-30 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 129 4e-30 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 127 2e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 126 3e-29 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 126 4e-29 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 125 6e-29 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 5.7 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 5.7 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 5.9 sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteri... 29 9.8 sp|P0C582|M2OM_NEUCR Putative mitochondrial 2-oxoglutarate/malat... 29 9.8 sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 h... 29 9.8 sp|Q9UT77|GATB_SCHPO Probable glutamyl-tRNA(Gln) amidotransferas... 29 9.8 sp|P19251|ASNS1_PEA Asparagine synthetase, nodule [glutamine-hyd... 29 9.8
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 130 bits (328), Expect = 2e-30 Identities = 66/108 (61%), Positives = 74/108 (68%) Frame = -2
Query: 422 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 243 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 242 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 99 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 130 bits (328), Expect = 2e-30 Identities = 66/108 (61%), Positives = 74/108 (68%) Frame = -2
Query: 422 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 243 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 242 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 99 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 129 bits (325), Expect = 4e-30 Identities = 64/108 (59%), Positives = 75/108 (69%) Frame = -2
Query: 422 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 243 S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ KYGANVDGYS Sbjct: 29 SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYS 88
Query: 242 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 99 PIY ++WS SGD Y G TGLAIWAVT LV+NTSALAQ Sbjct: 89 PIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 127 bits (320), Expect = 2e-29 Identities = 66/110 (60%), Positives = 73/110 (66%) Frame = -2
Query: 428 KLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDG 249 + S S RI ASGVKKI T P G +G + +DASGRK KG GVY++ KYGANVDG Sbjct: 32 RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDG 91
Query: 248 YSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 99 YSPIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 92 YSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 126 bits (317), Expect = 3e-29 Identities = 67/108 (62%), Positives = 72/108 (66%), Gaps = 1/108 (0%) Frame = -2
Query: 422 SAR-SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGY 246 SAR SL I A KK+ T P GP G FK +DASGR AKGKGVYQ+ KYGANVDGY Sbjct: 30 SARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGY 89
Query: 245 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALA 102 SPIY PEEWS SGD Y G TGL +WAVT LVY+TSALA Sbjct: 90 SPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 126 bits (316), Expect = 4e-29 Identities = 64/108 (59%), Positives = 72/108 (66%) Frame = -2
Query: 422 SARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYS 243 S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ KYGANVDGYS Sbjct: 33 SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYS 92
Query: 242 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 99 PIY EEW+ +GD YA G TGL IWAVT LVYNTSALAQ Sbjct: 93 PIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 125 bits (315), Expect = 6e-29 Identities = 65/105 (61%), Positives = 70/105 (66%) Frame = -2
Query: 413 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 234 S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y KYGANVDGYSPIY Sbjct: 36 SFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIY 95
Query: 233 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 99 EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 96 NENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 29.6 bits (65), Expect = 5.7 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2
Query: 281 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 186 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 29.6 bits (65), Expect = 5.7 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2
Query: 281 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 186 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWATTRSSLKAPP 333
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 5.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1
Query: 178 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 273 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PIM0 |
Definition |
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
111 |
Score (bit) |
141.0 |
E-value |
1.0e-32 |
Report |
|