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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915692
Clone id YMU001_000074_F09
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCAGATTCTTGTGTTTTTTTCCTGCTTACCAGAATGTTTTTCATGTATGCTGTGCTGT
CAGTAGGACGTTCTTTTCGATATTGAGGAGGACACTTGAAACATTGGGGCCAGCCCTAAT
TTCAAACCCACGCTGAAAAAATGGATGATGCACAAATTTTTCTTCTCGTCATGCTAAAGA
GCTTCCCATTCTCCTCCTTCCGCGGTTGGAAGGTTCATGTCCATGGTGGATATACCTCTG
GAGCAAATTGCCATAATGTGGCAGCACTGGTGTCAACTGATGACATTCGACCAGGCCTTA
TCTTGCCCACATGCTTAGAGGCAATGGCTATGGCAAATCATCATAAGCTTGCCATCCATA
GGACAGAACTCCATGCCTAATCCTGATCAGGCCCTTTTAATAATCCTAGATGTCTTTCCC
ACACTTATCACCAATTCACAGAGCTGAAAGGTAAGCCCCAAAAAGAAGCATGCCGTGAGG
CTACGTAGTTACGAGGAAGGGCT
■■Homology search results ■■ -
sp_hit_id Q7V9M5
Definition sp|Q7V9M5|MUTS_PROMA DNA mismatch repair protein mutS OS=Prochlorococcus marinus
Align length 26
Score (bit) 30.8
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915692|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_F09.
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7V9M5|MUTS_PROMA DNA mismatch repair protein mutS OS=Prochlo...    31   3.7  
sp|Q28560|AVR2A_SHEEP Activin receptor type-2A OS=Ovis aries GN=...    31   3.7  
sp|P38444|AVR2A_RAT Activin receptor type-2A OS=Rattus norvegicu...    31   3.7  
sp|P27038|AVR2A_MOUSE Activin receptor type-2A OS=Mus musculus G...    31   3.7  
sp|P27037|AVR2A_HUMAN Activin receptor type-2A OS=Homo sapiens G...    31   3.7  
sp|Q90669|AVR2A_CHICK Activin receptor type-2A OS=Gallus gallus ...    31   3.7  
sp|Q28043|AVR2A_BOVIN Activin receptor type-2A OS=Bos taurus GN=...    31   3.7  
sp|Q8FWU0|CATA_BRUSU Catalase OS=Brucella suis GN=katA PE=3 SV=3       30   4.9  

>sp|Q7V9M5|MUTS_PROMA DNA mismatch repair protein mutS
           OS=Prochlorococcus marinus GN=mutS PE=3 SV=1
          Length = 914

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 309 WAR*GLVECHQLTPVLPHYGNLLQRY 232
           W+   LVE ++LTPVL HY  L Q++
Sbjct: 78  WSHHSLVEINELTPVLRHYVELKQKH 103


>sp|Q28560|AVR2A_SHEEP Activin receptor type-2A OS=Ovis aries
           GN=ACVR2A PE=2 SV=1
          Length = 513

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 290 SNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEKKNLCII---HFFSVGLK 120
           +NV+S ++ CHI    +RG++ +  ++P  + G   A+ H + K+  ++   +  +    
Sbjct: 281 ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 340

Query: 119 LGLAPMFQVSSS 84
            GLA  F+   S
Sbjct: 341 FGLALKFEAGKS 352


>sp|P38444|AVR2A_RAT Activin receptor type-2A OS=Rattus norvegicus
           GN=Acvr2a PE=1 SV=1
          Length = 513

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 290 SNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEKKNLCII---HFFSVGLK 120
           +NV+S ++ CHI    +RG++ +  ++P  + G   A+ H + K+  ++   +  +    
Sbjct: 281 ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 340

Query: 119 LGLAPMFQVSSS 84
            GLA  F+   S
Sbjct: 341 FGLALKFEAGKS 352


>sp|P27038|AVR2A_MOUSE Activin receptor type-2A OS=Mus musculus
           GN=Acvr2a PE=1 SV=1
          Length = 513

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 290 SNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEKKNLCII---HFFSVGLK 120
           +NV+S ++ CHI    +RG++ +  ++P  + G   A+ H + K+  ++   +  +    
Sbjct: 281 ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 340

Query: 119 LGLAPMFQVSSS 84
            GLA  F+   S
Sbjct: 341 FGLALKFEAGKS 352


>sp|P27037|AVR2A_HUMAN Activin receptor type-2A OS=Homo sapiens
           GN=ACVR2A PE=2 SV=1
          Length = 513

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 290 SNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEKKNLCII---HFFSVGLK 120
           +NV+S ++ CHI    +RG++ +  ++P  + G   A+ H + K+  ++   +  +    
Sbjct: 281 ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 340

Query: 119 LGLAPMFQVSSS 84
            GLA  F+   S
Sbjct: 341 FGLALKFEAGKS 352


>sp|Q90669|AVR2A_CHICK Activin receptor type-2A OS=Gallus gallus
           GN=ACVR2A PE=2 SV=1
          Length = 513

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 290 SNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEKKNLCII---HFFSVGLK 120
           +NV+S ++ CHI    +RG++ +  ++P  + G   A+ H + K+  ++   +  +    
Sbjct: 281 ANVVSWNELCHIAQTMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 340

Query: 119 LGLAPMFQVSSS 84
            GLA  F+   S
Sbjct: 341 FGLALKFEAGKS 352


>sp|Q28043|AVR2A_BOVIN Activin receptor type-2A OS=Bos taurus
           GN=ACVR2A PE=2 SV=1
          Length = 513

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 290 SNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEKKNLCII---HFFSVGLK 120
           +NV+S ++ CHI    +RG++ +  ++P  + G   A+ H + K+  ++   +  +    
Sbjct: 281 ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 340

Query: 119 LGLAPMFQVSSS 84
            GLA  F+   S
Sbjct: 341 FGLALKFEAGKS 352


>sp|Q8FWU0|CATA_BRUSU Catalase OS=Brucella suis GN=katA PE=3 SV=3
          Length = 499

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 264 ALVSTDDIRPGL------ILPTCLEAMAMANHHKLAIHRTELHA*S*SGPFNNPRCLSHT 425
           A  S  +I PG+      +L   + + A A+ H+L  H   +       P N P+CL H 
Sbjct: 311 AAFSPSNIVPGIGFSPDKMLQARIFSYADAHRHRLGTHYESI-------PVNQPKCLVHH 363

Query: 426 YHQ 434
           YH+
Sbjct: 364 YHR 366
tr_hit_id B0W076
Definition tr|B0W076|B0W076_CULQU Serine protease OS=Culex quinquefasciatus
Align length 41
Score (bit) 35.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915692|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_F09.
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0W076|B0W076_CULQU Serine protease OS=Culex quinquefasciatus...    35   2.0  
tr|Q1AVM5|Q1AVM5_RUBXD Putative uncharacterized protein OS=Rubro...    33   5.8  
tr|Q8YAU5|Q8YAU5_LISMO Beta-glucosidase OS=Listeria monocytogene...    33   7.6  
tr|Q4EUS8|Q4EUS8_LISMO Glycosyl hydrolase, family 1 OS=Listeria ...    33   7.6  
tr|Q4EHU0|Q4EHU0_LISMO Glycosyl hydrolase, family 1 OS=Listeria ...    33   7.6  
tr|B6H1P3|B6H1P3_PENCH Pc13g01560 protein OS=Penicillium chrysog...    33   7.6  
tr|Q725F1|Q725F1_LISMF Glycosyl hydrolase, family 1 OS=Listeria ...    33   9.9  

>tr|B0W076|B0W076_CULQU Serine protease OS=Culex quinquefasciatus
           GN=CpipJ_CPIJ000440 PE=4 SV=1
          Length = 427

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 219 VHGGYTSGANCHNVAALVSTDDIRPG-LILPTCLEAMAMAN 338
           VH G+T   + H+VA L++ D +R G  + P CL   ++AN
Sbjct: 121 VHEGFTGDNHGHDVALLITKDPVRYGKFVQPACLPTFSLAN 161


>tr|Q1AVM5|Q1AVM5_RUBXD Putative uncharacterized protein
           OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC
           16129) GN=Rxyl_1591 PE=4 SV=1
          Length = 188

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 290 TRPYLAHMLRGNGYGKSS*ACHP*DRTPCLILIRP 394
           T   L ++L   GYG+++ ACH   RTP L+++ P
Sbjct: 120 TADSLGNLLTAQGYGRAAYACHEETRTPVLVVLIP 154


>tr|Q8YAU5|Q8YAU5_LISMO Beta-glucosidase OS=Listeria monocytogenes
           GN=lmo0018 PE=3 SV=1
          Length = 477

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 305 QDKAWSNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEK 162
           +D  W   ++ +QC        +G+S +D+ LPT E G WEAL +  K
Sbjct: 8   KDFLWGGAVAANQCEGAYLEDGKGLSLVDI-LPTVEDGRWEALFNPSK 54


>tr|Q4EUS8|Q4EUS8_LISMO Glycosyl hydrolase, family 1 OS=Listeria
           monocytogenes str. 1/2a F6854 GN=LMOf6854_0021 PE=3 SV=1
          Length = 477

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 305 QDKAWSNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEK 162
           +D  W   ++ +QC        +G+S +D+ LPT E G WEAL +  K
Sbjct: 8   KDFLWGGAVAANQCEGAYLEDGKGLSLVDI-LPTVEDGRWEALFNPSK 54


>tr|Q4EHU0|Q4EHU0_LISMO Glycosyl hydrolase, family 1 OS=Listeria
           monocytogenes str. 4b H7858 GN=LMOh7858_0024 PE=3 SV=1
          Length = 477

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 305 QDKAWSNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL*HDEK 162
           +D  W   ++ +QC        +G+S +D+ LPT E G WEAL +  K
Sbjct: 8   KDFLWGGAVAANQCEGAYLEDGKGLSLVDI-LPTVEDGRWEALFNPSK 54


>tr|B6H1P3|B6H1P3_PENCH Pc13g01560 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g01560 PE=4 SV=1
          Length = 616

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +1

Query: 133 LKKWMMHKFFFSSC*RASHSPPSAVGRFMSMVDIPLEQIAIMWQHWCQLMTF 288
           +  W++ +  + S  R  H P   +  +M+M   P   I++ W  W   + F
Sbjct: 458 ISMWLLRREIYRSRRRGEHRPDPEISLYMAMFGAPAVPISLFWMGWTAELEF 509


>tr|Q725F1|Q725F1_LISMF Glycosyl hydrolase, family 1 OS=Listeria
           monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_0021 PE=3 SV=1
          Length = 477

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 305 QDKAWSNVIS*HQCCHIMAICSRGISTMDMNLPTAEGGEWEAL 177
           +D  W   ++ +QC        +G+S +D+ LPT E G WEAL
Sbjct: 8   KDFLWGGAVAANQCEGAYLEDGKGLSLVDI-LPTVEDGRWEAL 49