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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915696
Clone id YMU001_000074_G01
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTGCACTTCGAAGTCTTGACTCCAGGCATGCTGTTTAGTTCTGCGGTTCCAAGAGAAGC
ATTGGATGAAGGGCATTTTGTCATACCCAGATTGATCGAGCTTGGAACAGATGATCTGAT
CTGTCAAGGACAAGGCTTCATACAATGGCTCATGAAGAATGTGTCAGGGGAGAGATGGTC
TTCTTTATATCGATCTTGATGAGTGCACAAATGGGGTGCAGCATCTGTTCATGCGAAATG
AGGGAATATCCGGATTCAACAGCCTTCTGTTATAAAGTAGCCTTCTTTGATGATGCGGAG
ACTCCCAGAGCAATATGGGAGATGTGACCCCTGTGAAAGAGGTGGATCAAGCAGGATAGG
GTTAGCTGGTGCTTGAGAGTACAAAGCATGCAAGTAAGTTCCACAATACACAGGAACACA
TGGAGAAAGTCTATTAGATGTCACAACTTTAGCTTGAGGTCAATTTCACAATACTCGAAA
ACATGGAGTAAGACTATCAGTCGCAACTTTGTTT
■■Homology search results ■■ -
sp_hit_id Q9P2K9
Definition sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens
Align length 42
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915696|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_G01.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Hom...    32   1.7  
sp|Q0SQ58|MURC_CLOPS UDP-N-acetylmuramate--L-alanine ligase OS=C...    32   1.8  
sp|Q8XHJ0|MURC_CLOPE UDP-N-acetylmuramate--L-alanine ligase OS=C...    32   1.8  
sp|Q0TMG0|MURC_CLOP1 UDP-N-acetylmuramate--L-alanine ligase OS=C...    32   1.8  
sp|Q9BWP8|COL11_HUMAN Collectin-11 OS=Homo sapiens GN=COLEC11 PE...    32   2.2  
sp|P49013|FBP3_STRPU Fibropellin-3 OS=Strongylocentrotus purpura...    32   2.3  
sp|Q7T0T0|COL11_XENLA Collectin-11 OS=Xenopus laevis GN=colec11 ...    31   2.9  
sp|A0PXK5|MURC_CLONN UDP-N-acetylmuramate--L-alanine ligase OS=C...    31   3.9  
sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sap...    30   6.5  
sp|Q5JTH9|RRP12_HUMAN RRP12-like protein OS=Homo sapiens GN=RRP1...    30   6.5  
sp|Q899J1|MURC_CLOTE UDP-N-acetylmuramate--L-alanine ligase OS=C...    30   6.7  
sp|A5N4I2|MURC_CLOK5 UDP-N-acetylmuramate--L-alanine ligase OS=C...    30   8.7  

>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo
            sapiens GN=PTCHD2 PE=2 SV=2
          Length = 1392

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 329  GHISHIALGVSASSKKATL*-QKAVESGYSLISHEQMLHPIC 207
            GH+ H+   ++A+S+       + + SGYS+ S  QMLHP C
Sbjct: 1050 GHLCHLCKAIAANSELVKPGGAQCLPSGYSISSFLQMLHPEC 1091


>sp|Q0SQ58|MURC_CLOPS UDP-N-acetylmuramate--L-alanine ligase
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=murC PE=3 SV=1
          Length = 457

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = -2

Query: 351 LDPPLSQGSHLPYCSGSLRIIKEGYFITEGC-----*IRIFPH---FA*TDAAPHLCTHQ 196
           LDP +  G  L    G+ R+    YFITE C      +R FP+       DA      H 
Sbjct: 138 LDPTILVGGDLDIIHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDA-----DHL 192

Query: 195 DRYKEDHLSPDTF 157
           D YK+ +   DTF
Sbjct: 193 DFYKDINHIKDTF 205


>sp|Q8XHJ0|MURC_CLOPE UDP-N-acetylmuramate--L-alanine ligase
           OS=Clostridium perfringens GN=murC PE=3 SV=2
          Length = 457

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = -2

Query: 351 LDPPLSQGSHLPYCSGSLRIIKEGYFITEGC-----*IRIFPH---FA*TDAAPHLCTHQ 196
           LDP +  G  L    G+ R+    YFITE C      +R FP+       DA      H 
Sbjct: 138 LDPTILVGGDLDIIHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDA-----DHL 192

Query: 195 DRYKEDHLSPDTF 157
           D YK+ +   DTF
Sbjct: 193 DFYKDINHIKDTF 205


>sp|Q0TMG0|MURC_CLOP1 UDP-N-acetylmuramate--L-alanine ligase
           OS=Clostridium perfringens (strain ATCC 13124 / NCTC
           8237 / Type A) GN=murC PE=3 SV=2
          Length = 457

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = -2

Query: 351 LDPPLSQGSHLPYCSGSLRIIKEGYFITEGC-----*IRIFPH---FA*TDAAPHLCTHQ 196
           LDP +  G  L    G+ R+    YFITE C      +R FP+       DA      H 
Sbjct: 138 LDPTILVGGDLDIIHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDA-----DHL 192

Query: 195 DRYKEDHLSPDTF 157
           D YK+ +   DTF
Sbjct: 193 DFYKDINHIKDTF 205


>sp|Q9BWP8|COL11_HUMAN Collectin-11 OS=Homo sapiens GN=COLEC11 PE=2
           SV=1
          Length = 271

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 123 VKDKASYNGS*RMCQGRDGLLYIDLDECTNGVQHLFMRNEGIS 251
           VK++  Y  +   CQGR G L +  DE  NG+   ++   G++
Sbjct: 157 VKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLA 199


>sp|P49013|FBP3_STRPU Fibropellin-3 OS=Strongylocentrotus purpuratus
           GN=EGF3 PE=1 SV=1
          Length = 570

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 329 PCERGGSSRIGLAGA*EYKACK*VPQYTGTHGESLLD 439
           PC  GGS   G+ G      C+ +P YTGTH E  LD
Sbjct: 336 PCLNGGSCLDGVDGY----VCQCLPNYTGTHCEISLD 368


>sp|Q7T0T0|COL11_XENLA Collectin-11 OS=Xenopus laevis GN=colec11
           PE=2 SV=1
          Length = 271

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 123 VKDKASYNGS*RMCQGRDGLLYIDLDECTNGVQHLFMRNEGIS 251
           VK++  Y  +   CQGR G L +  DE TN +   ++ + G+S
Sbjct: 157 VKEEKKYIDAQDYCQGRGGTLSMPKDEATNSLIASYINHAGLS 199


>sp|A0PXK5|MURC_CLONN UDP-N-acetylmuramate--L-alanine ligase
           OS=Clostridium novyi (strain NT) GN=murC PE=3 SV=1
          Length = 458

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 351 LDPPLSQGSHLPYCSGSLRIIKEGYFITEGC 259
           LDP +  G +L   +G++R+    YF+TE C
Sbjct: 138 LDPTILVGGNLDVINGNVRVGNSEYFVTEAC 168


>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens
            GN=ZFHX2 PE=2 SV=2
          Length = 1427

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 392  CMLCTLKHQLTLSCLIHLFHRGHISHIALGVSASSK 285
            C  C +K+   +SC  HLF R H++ +   V A  K
Sbjct: 1003 CPYCDVKYDFYVSCRGHLFSRQHLAKLKEAVRAQLK 1038


>sp|Q5JTH9|RRP12_HUMAN RRP12-like protein OS=Homo sapiens GN=RRP12
           PE=1 SV=2
          Length = 1297

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -3

Query: 401 ELTCMLCTLKHQLTLSCLIHLFHRGHISHIALGVSASSKKATL*QKAVESGYSLISHEQM 222
           E    + TL H L  +C +  FH   + H   G+S  S  A L  + + + Y  +  E  
Sbjct: 328 ETLLRVMTLSHVLVTACAMQAFH--SLFHARPGLSTLS--AELNAQIITALYDYVPSEND 383

Query: 221 LHPICALIKIDIKKTIS 171
           L P+ A +K+  K  I+
Sbjct: 384 LQPLLAWLKVMEKAHIN 400
tr_hit_id Q240M8
Definition tr|Q240M8|Q240M8_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 57
Score (bit) 34.7
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915696|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_G01.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q240M8|Q240M8_TETTH Putative uncharacterized protein OS=Tetra...    35   2.9  
tr|Q0K6C2|Q0K6C2_RALEH Cytosine deaminase or related metal-depen...    34   4.9  
tr|Q46WP2|Q46WP2_RALEJ Amidohydrolase OS=Ralstonia eutropha (str...    33   6.4  
tr|B3R761|B3R761_CUPTR HYDROXY-ATRAZINE ETHYL AMINO HYDROLASE PR...    33   6.4  

>tr|Q240M8|Q240M8_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_01117300 PE=4
            SV=1
          Length = 2884

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 207  CTHQDRYKEDHLSPDTFFMSHCMKPCP*QIRSSVPSSINLGMTKCPSSNASLGTAEL 37
            CT Q R  +  +S   F+ + C   CP    S+VP +I+   T CPS+ A+  + ++
Sbjct: 1216 CTDQSRNCQSCISTAGFYQNKCYSTCP----SNVPLNIDGQCTSCPSNCATCSSLDV 1268


>tr|Q0K6C2|Q0K6C2_RALEH Cytosine deaminase or related
           metal-dependent hydrolase OS=Ralstonia eutropha (strain
           ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=H16_A3380
           PE=3 SV=1
          Length = 468

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
 Frame = -2

Query: 294 IIKEGYFITEGC*IRIFPHFA*TDAAPHLCTHQDRYK---------EDHLSPDTFFMSHC 142
           +++E      G  +R+  H + TD     C  +++Y+          D L PD +F +H 
Sbjct: 233 LLRELAAFGRGMDLRLHSHLSETDNYVKFC--REKYQCTPVQFVADHDWLGPDVWF-AHL 289

Query: 141 MKPCP*QIRSSVPSSINLGMTKCPSSNASLGT 46
           +   P +IR    +  N GM  CP SNA LG+
Sbjct: 290 VTVNPEEIRMLAVT--NTGMAHCPVSNARLGS 319


>tr|Q46WP2|Q46WP2_RALEJ Amidohydrolase OS=Ralstonia eutropha (strain
           JMP134) GN=Reut_A3081 PE=4 SV=1
          Length = 464

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
 Frame = -2

Query: 372 APANPILLDPPLSQGSHLPYCSGSLRIIKEGYFITEGC*IRIFPHFA*TDAAPHLCTHQD 193
           AP  P    PP+              +++E      G  +R+  H + TD     C  ++
Sbjct: 217 APTTPTFSLPPV--------------LLRELSAFGRGMDLRLHSHLSETDNYVRFC--RE 260

Query: 192 RYK---------EDHLSPDTFFMSHCMKPCP*QIRSSVPSSINLGMTKCPSSNASLGT 46
           RY+          D L PD +F +H +     +IR    +  N GM  CP SNA LG+
Sbjct: 261 RYQCSPVQFVADHDWLGPDVWF-AHLVAVTSEEIRMLAVT--NTGMAHCPVSNARLGS 315


>tr|B3R761|B3R761_CUPTR HYDROXY-ATRAZINE ETHYL AMINO HYDROLASE
           PROTEIN OS=Cupriavidus taiwanensis (strain R1 / LMG
           19424) GN=atzB PE=4 SV=1
          Length = 467

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
 Frame = -2

Query: 294 IIKEGYFITEGC*IRIFPHFA*TDAAPHLCTHQDRYK---------EDHLSPDTFFMSHC 142
           +++E      G  +R+  H + TD     C  +++Y+          D L PD +F +H 
Sbjct: 232 LLRELAAFGRGMDLRLHSHLSETDNYVKFC--REKYQCTPVQFVADHDWLGPDVWF-AHL 288

Query: 141 MKPCP*QIRSSVPSSINLGMTKCPSSNASLGT 46
           +   P ++R    +  N GM  CP SNA LG+
Sbjct: 289 VTVNPEEVRMLAVT--NTGMAHCPVSNARLGS 318