BP915707
Clone id YMU001_000074_H02
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TCGTAAATGTGCTCTTGCTCTGGTCATTGTCTAGCAGACGGTTTCTCTCTTCAGTCTAGC
AATTTCAAGTATGTCCTTGACTTACTTGAGGGGGAAAGCAAAGACAGTGAAATTACAGAT
TCCGCTATAATGACAGTGTCAAGAGTTGACGTAAAACCTCAAGATGTACAGTATGGCAAT
GCGGACATCACAGGCTCGGTGGCAAATACCATGCAAATGGCAAAGAGTCACCACTTAAAC
AGTCAGGTATCAAGAAGCAGAACTCCCGTCTGATGCAACAGAATTGGGGAGCACCCACAC
TCTTTGCTCGGAGTGTCTTCTAGTTAGATTTCACATACGATATTCTATGGTTGTAAAATT
TGGAGGCAGTTCCTCTAGCATAACAAAGTTAACAGTAAAGAACCTGTGAATTCTCGGACA
TTATACTTTAAAGATTGGAAAGGAGTCGTTTGAATATGTATAAACTTAAAAAGGTCACAT
TCCCTAGCTATGGCTTTACCTCTGCCGCTTCCGCAATGTTTTGTACACTAAAGTCCCCTA
CCAAGACACAGGTTTATCTTGAGATAGTCTCAC
■■Homology search results ■■ -
sp_hit_id P11473
Definition sp|P11473|VDR_HUMAN Vitamin D3 receptor OS=Homo sapiens
Align length 35
Score (bit) 30.4
E-value 6.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915707|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H02.
(573 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P11473|VDR_HUMAN Vitamin D3 receptor OS=Homo sapiens GN=VDR P... 30 6.6
sp|Q944R1|PEL15_ARATH Probable pectate lyase 15 OS=Arabidopsis t... 30 6.6

>sp|P11473|VDR_HUMAN Vitamin D3 receptor OS=Homo sapiens GN=VDR PE=1
SV=1
Length = 427

Score = 30.4 bits (67), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1

Query: 13 SCSGHCLADGFSLQSSNFKYVLDLLEGESKDSEIT 117
SCS HC+ + SS+F LDL E +S D +T
Sbjct: 185 SCSDHCITSSDMMDSSSFSN-LDLSEEDSDDPSVT 218


>sp|Q944R1|PEL15_ARATH Probable pectate lyase 15 OS=Arabidopsis
thaliana GN=At4g13710 PE=2 SV=1
Length = 470

Score = 30.4 bits (67), Expect = 6.6
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1

Query: 49 LQSSNFKYVLDLLEGESKDSEITDSAIMTVSRVDVKPQDVQYGNAD----ITGSVANTMQ 216
+QSSN + + + ++++ + +S+ M +R+D +PQ Q+ AD + VA +Q
Sbjct: 42 IQSSNSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDPDMVADEVAKLVQ 101

Query: 217 MAKSH 231
M++ +
Sbjct: 102 MSEQN 106


tr_hit_id B1R1F5
Definition tr|B1R1F5|B1R1F5_CLOBU Calcium-translocating P-type atpase, pmca-type OS=Clostridium butyricum 5521
Align length 45
Score (bit) 35.4
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915707|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H02.
(573 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1R1F5|B1R1F5_CLOBU Calcium-translocating P-type atpase, pmca... 35 2.3
tr|B4G8W6|B4G8W6_DROPE GL18754 OS=Drosophila persimilis GN=GL187... 34 6.6

>tr|B1R1F5|B1R1F5_CLOBU Calcium-translocating P-type atpase,
pmca-type OS=Clostridium butyricum 5521 GN=CBY_2688 PE=4
SV=1
Length = 912

Score = 35.4 bits (80), Expect = 2.3
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1

Query: 34 ADGFSLQSSNFKYVLDLLEGESKDSEITDSAIMTVSRVDVKPQDV 168
ADG +QS N K D+L GES D ++ I+++ ++DVK +++
Sbjct: 153 ADGRLVQSINLKIREDMLTGESDDVRKNENIIVSMEKLDVKGKEI 197


>tr|B4G8W6|B4G8W6_DROPE GL18754 OS=Drosophila persimilis GN=GL18754
PE=4 SV=1
Length = 239

Score = 33.9 bits (76), Expect = 6.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3

Query: 180 CGHHRLGGKYHANGKESPLKQSGI 251
C H L GKY+A+GK +P K GI
Sbjct: 188 CAHSSLNGKYYADGKSAPSKHDGI 211