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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915709
Clone id YMU001_000074_H04
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTGTGTGTGTGTGCAAATTTTCACTTCCATGCTGTGGACGCTCTCTGATAACGAGCCTT
GGAGATGCCCTTTCTTTAATGTAGTAGAAAGCCAGTTGTAATTGCGAGATGCACCTCCTC
ATGTTGCTTGACAATATGATAGCCCGTCCTGACTATCAGCCTCTTAACCAGTAGTTCGTG
CTACCCGCTCGGCTCCTATAATCTCCACTTGAGCCCCTTCTGCATCTCGATTGGCGTCAA
TCCTTCATCTGCTCACGACTTTCCTTCTCTGTCATCTGATCTCTAGGGTGACCCTCCTCC
TTGCAGCTCCTGTATTTCCCTCCTTTTGCGTATTGCATGCTACTTTCAGCTTCTTATGCA
ACATCCTCCTATTGCATTCGATGCCCTCCTACACTTCACTACAACGCCTTTCGATT
■■Homology search results ■■ -
sp_hit_id P60409
Definition sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo sapiens
Align length 91
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915709|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H04.
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo sa...    30   4.9  
sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 OS=Homo sa...    30   4.9  
sp|Q46821|YGFU_ECOLI Putative purine permease ygfU OS=Escherichi...    29   6.4  
sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=...    29   6.4  
sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=...    29   6.4  
sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=...    29   6.4  
sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=...    29   6.4  
sp|Q9Z701|MUDD_CHLPN Bifunctional enzyme murC/ddl OS=Chlamydia p...    29   6.4  
sp|P60014|KR10A_HUMAN Keratin-associated protein 10-10 OS=Homo s...    29   6.4  
sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 OS=Homo sa...    29   6.4  
sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 OS=Homo s...    29   8.4  
sp|Q5K9Y1|CHS7_CRYNE Chitin synthase export chaperone OS=Cryptoc...    29   8.4  

>sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo
           sapiens GN=KRTAP10-7 PE=2 SV=2
          Length = 375

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
 Frame = +2

Query: 89  KPV----VIARCTSSCCLTI**PVLTISLLTSSSCYPLGSYNLHLSPFCISIGVNPSSAH 256
           KPV    V +  +SSCC          +  T+S C P  S +L   P C      P+   
Sbjct: 277 KPVCCVPVCSGASSSCCQQ---SSCQPACCTTSCCRPSSSVSLLCRPVC-----RPTCCV 328

Query: 257 DFPSLSSDL*GDPPPC---SSCISLLLRIAC 340
             PS  +        C   +SC+SLL R AC
Sbjct: 329 PVPSCCAPTSSCQASCCRPASCVSLLCRPAC 359


>sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 OS=Homo
           sapiens GN=KRTAP10-1 PE=2 SV=2
          Length = 282

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/77 (31%), Positives = 31/77 (40%)
 Frame = +2

Query: 110 CTSSCCLTI**PVLTISLLTSSSCYPLGSYNLHLSPFCISIGVNPSSAHDFPSLSSDL*G 289
           C  +CC             T+S C P  S +L   P C      P S+   P+ S     
Sbjct: 216 CQPACC-------------TTSCCRPSSSVSLLCRPVCRPACCMPVSSCCAPASSCQASC 262

Query: 290 DPPPCSSCISLLLRIAC 340
             P  +SC+SLL R AC
Sbjct: 263 CRP--ASCVSLLCRPAC 277


>sp|Q46821|YGFU_ECOLI Putative purine permease ygfU OS=Escherichia
           coli (strain K12) GN=ygfU PE=1 SV=2
          Length = 482

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 146 VLTISLLTSSSC-YPLGSYNLHLSPFCISIGVNPSSAHDF 262
           VL   +   S C Y    YNL++    + +G+ P+ +HDF
Sbjct: 373 VLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDF 412


>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4
           OS=Pongo abelii GN=USP4 PE=2 SV=1
          Length = 963

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 9   CVQIFTSMLWTLSDNEPWRCP 71
           C+++FT+M  TL +++PW CP
Sbjct: 781 CIELFTTME-TLGEHDPWYCP 800


>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus
           musculus GN=Usp4 PE=2 SV=2
          Length = 962

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 9   CVQIFTSMLWTLSDNEPWRCP 71
           C+++FT+M  TL +++PW CP
Sbjct: 780 CIELFTTME-TLGEHDPWYCP 799


>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4
           OS=Homo sapiens GN=USP4 PE=1 SV=3
          Length = 963

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 9   CVQIFTSMLWTLSDNEPWRCP 71
           C+++FT+M  TL +++PW CP
Sbjct: 781 CIELFTTME-TLGEHDPWYCP 800


>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos
           taurus GN=USP4 PE=2 SV=1
          Length = 963

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 9   CVQIFTSMLWTLSDNEPWRCP 71
           C+++FT+M  TL +++PW CP
Sbjct: 781 CIELFTTME-TLGEHDPWYCP 800


>sp|Q9Z701|MUDD_CHLPN Bifunctional enzyme murC/ddl OS=Chlamydia
           pneumoniae GN=murC/ddl PE=3 SV=1
          Length = 809

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 257 DFPSLSSDL*GDPPPCSSCISLLLRIACYFQLLMQHPPIAFDALL 391
           DFP L  +  GD P  S   S L ++ C F +L  H P   D  +
Sbjct: 502 DFPHLIEETQGDSPLSSEIASALAKVDCLFPVL--HGPFGEDGTI 544


>sp|P60014|KR10A_HUMAN Keratin-associated protein 10-10 OS=Homo
           sapiens GN=KRTAP10-10 PE=1 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +2

Query: 80  CSRKPVVIARCTSSCCLTI**PVLTISLLTSSSCYPLGSYNLHLSPFCISIGVNPSSAHD 259
           C +     A CT+SCC     P  ++SLL    C+P+       S  C+ +         
Sbjct: 169 CQQSSCQPACCTASCCR----PSSSVSLL----CHPVCK-----STCCVPV--------- 206

Query: 260 FPSLSSDL*GDPPPC---SSCISLLLRIAC 340
            PS  +      P C   +SC+SLL R  C
Sbjct: 207 -PSCGASASSCQPSCCRTASCVSLLCRPVC 235


>sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 OS=Homo
           sapiens GN=KRTAP10-5 PE=2 SV=2
          Length = 271

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/77 (31%), Positives = 31/77 (40%)
 Frame = +2

Query: 110 CTSSCCLTI**PVLTISLLTSSSCYPLGSYNLHLSPFCISIGVNPSSAHDFPSLSSDL*G 289
           C  +CC             T+S C P  S +L   P C      P S+   P+ S     
Sbjct: 205 CQPACC-------------TTSCCRPSSSVSLLCRPICRPACCVPISSCCAPASSYQASC 251

Query: 290 DPPPCSSCISLLLRIAC 340
             P  +SC+SLL R AC
Sbjct: 252 CRP--ASCVSLLCRPAC 266
tr_hit_id B4V8I1
Definition tr|B4V8I1|B4V8I1_9ACTO Allergen V5/Tpx-1 protein OS=Streptomyces sp. Mg1
Align length 58
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915709|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H04.
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4V8I1|B4V8I1_9ACTO Allergen V5/Tpx-1 protein OS=Streptomyces...    35   1.9  
tr|A9V0K7|A9V0K7_MONBE Predicted protein OS=Monosiga brevicollis...    34   3.2  

>tr|B4V8I1|B4V8I1_9ACTO Allergen V5/Tpx-1 protein OS=Streptomyces
           sp. Mg1 GN=SSAG_04059 PE=4 SV=1
          Length = 205

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 172 TG*EADS-QDGLSYCQAT*GGASRNYNWLSTTLKKGHLQGSLSESVHSMEVKICTHTQ 2
           TG +  S QD L    AT   ++ N  W S   KK H+ G L+ +VHS  +K C++T+
Sbjct: 133 TGSDGSSIQDRLKKAGATFNASAENIAWGSVDEKK-HVDGWLASAVHSGNIKNCSYTK 189


>tr|A9V0K7|A9V0K7_MONBE Predicted protein OS=Monosiga brevicollis
           GN=32599 PE=4 SV=1
          Length = 344

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = -1

Query: 149 GRAIILSSNMRRCISQLQLAFYYIKERASPRLVI 48
           GRAI++ SN+RRC+S   +A Y   +R+  +LVI
Sbjct: 148 GRAILVCSNLRRCLSTAIVALYDRLKRSEEKLVI 181