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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915711
Clone id YMU001_000074_H06
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000074_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACTTCAAACCCCTAGGTTGCCATTGCAAAAGAACAAATGAATGCATATACAAGATGTAC
TTGACAAGGTCATCAGTTACTCCTCTCAAAATACTGAACCAGGCAGCATAACAAAGGCAC
TTTGTTTAACATCTCCTGCGGCAAGTATTTGCTTTCTTTCTTTCTCATCAATGGCCGACA
TCTGCAGTATTGAACTCAATTGAGGATGCTGGCGAAAGCCCACTACTCGCACAAAATCAT
CTGCTTTCTTTCTCTTAGATGACCCGAGCTCTTGCGAAAACCGATGTCTGTTGTATTTAA
CTGATCTGAGAATGCTGAACAAGCCCAATATATGCACAGAAGACCATTCTAACTTA
■■Homology search results ■■ -
sp_hit_id O27944
Definition sp|O27944|Y2340_ARCFU Uncharacterized protein AF_2340 OS=Archaeoglobus fulgidus
Align length 69
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915711|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H06.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O27944|Y2340_ARCFU Uncharacterized protein AF_2340 OS=Archaeo...    31   1.7  
sp|P24700|MYF5_XENLA Myogenic factor 5 OS=Xenopus laevis GN=myf5...    30   3.8  
sp|P80150|HRC2_XANEU Protein hrpC2 OS=Xanthomonas euvesicatoria ...    30   3.8  
sp|A2AWP8|ARGAL_MOUSE Rho guanine nucleotide exchange factor 10-...    30   3.8  
sp|Q8CHQ0|FBX4_MOUSE F-box only protein 4 OS=Mus musculus GN=Fbx...    30   5.0  
sp|Q9HCE6|ARGAL_HUMAN Rho guanine nucleotide exchange factor 10-...    30   5.0  
sp|Q29RM4|ARGAL_BOVIN Rho guanine nucleotide exchange factor 10-...    30   5.0  
sp|Q5R5M3|ARGAL_PONAB Rho guanine nucleotide exchange factor 10-...    29   8.5  

>sp|O27944|Y2340_ARCFU Uncharacterized protein AF_2340
           OS=Archaeoglobus fulgidus GN=AF_2340 PE=4 SV=1
          Length = 633

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
 Frame = -2

Query: 289 RHRFSQEL-GSSKRKKADD----FVRVVGFRQHPQLSSILQMSAIDEKERKQILAAGDVK 125
           +  F++EL G++KRK+AD+     + V+G R + ++SSI   S + +  RK I+ A  VK
Sbjct: 379 KKEFAEELLGAAKRKRADEAANRILEVLGDRNYAEISSI--ESELPDLSRKDIVDA--VK 434

Query: 124 QSAFVMLPG 98
           +S  + L G
Sbjct: 435 RSQRLELYG 443


>sp|P24700|MYF5_XENLA Myogenic factor 5 OS=Xenopus laevis GN=myf5
           PE=2 SV=1
          Length = 255

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = -3

Query: 336 CIYWACSAFSDQLNTTDIGFRKSSGHLRERKQMILCE*WAFASILN*VQYCRCRPLMRKK 157
           C+ WAC A   + +TTD   R+ +  +RER+++      AF ++              K+
Sbjct: 67  CLMWACKACKRKSSTTD---RRKAATMRERRRLKKVN-QAFETL--------------KR 108

Query: 156 ESKYLPQEMLNKVPLLCCLVQYFE 85
            +   P + L KV +L   +QY E
Sbjct: 109 CTTTNPNQRLPKVEILRNAIQYIE 132


>sp|P80150|HRC2_XANEU Protein hrpC2 OS=Xanthomonas euvesicatoria
           GN=hrpC2 PE=3 SV=1
          Length = 645

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 253 RKKADDFVRVVGFRQHPQLSSILQMSAID---EKERKQIL 143
           RK A DF   +  R  PQL+++L  + +D   E ER+Q++
Sbjct: 354 RKNAPDFASPLSMRLSPQLAALLDPARLDQAIESERRQLV 393


>sp|A2AWP8|ARGAL_MOUSE Rho guanine nucleotide exchange factor
           10-like protein OS=Mus musculus GN=Arhgef10l PE=1 SV=1
          Length = 1280

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 57  VLDKVISYSSQNTEPGSITKALCLTSPAASICFLSFSSMADICSIE 194
           VLD    Y +  T   SI K  CLT PA    FL F     +CS +
Sbjct: 404 VLDVYSDYVNNFTNAMSIIKKACLTKPA----FLEFLKRRQVCSTD 445


>sp|Q8CHQ0|FBX4_MOUSE F-box only protein 4 OS=Mus musculus GN=Fbxo4
           PE=2 SV=1
          Length = 385

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 23/82 (28%), Positives = 31/82 (37%)
 Frame = +3

Query: 81  SSQNTEPGSITKALCLTSPAASICFLSFSSMADICSIELN*GCWRKPTTRTKSSAFFLLD 260
           ++   E    T AL        +  LSF S  D+C +      W K         +FLL 
Sbjct: 44  TASRKEAAEETSALTRLPVDVQLYILSFLSPHDLCQLGSTDHYWNKTVRDPILWRYFLLR 103

Query: 261 DPSSCENRCLLYLTDLRMLNKP 326
           D  S  +     L DL +L KP
Sbjct: 104 DLPSWSSVDWKSLPDLEILKKP 125


>sp|Q9HCE6|ARGAL_HUMAN Rho guanine nucleotide exchange factor
           10-like protein OS=Homo sapiens GN=ARHGEF10L PE=1 SV=2
          Length = 1279

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +3

Query: 57  VLDKVISYSSQNTEPGSITKALCLTSPAASICFLSFSSMADICS 188
           VLD    Y +  T   SI K  CLT PA    FL F     +CS
Sbjct: 406 VLDVYSDYVNNFTSAMSIIKKACLTKPA----FLEFLKRRQVCS 445


>sp|Q29RM4|ARGAL_BOVIN Rho guanine nucleotide exchange factor
           10-like protein OS=Bos taurus GN=ARHGEF10L PE=2 SV=1
          Length = 1237

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +3

Query: 57  VLDKVISYSSQNTEPGSITKALCLTSPAASICFLSFSSMADICS 188
           VLD    Y +  T   SI K  CLT PA    FL F     +CS
Sbjct: 366 VLDVYSDYVNNFTNAMSIIKKACLTKPA----FLEFLKRRQVCS 405


>sp|Q5R5M3|ARGAL_PONAB Rho guanine nucleotide exchange factor
           10-like protein OS=Pongo abelii GN=ARHGEF10L PE=2 SV=1
          Length = 1233

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +3

Query: 57  VLDKVISYSSQNTEPGSITKALCLTSPAASICFLSFSSMADICS 188
           VLD    Y +  T   SI K  CLT PA    FL F     +CS
Sbjct: 365 VLDVYSDYVNNFTGAMSIIKKACLTKPA----FLEFLKRRQVCS 404
tr_hit_id Q241V0
Definition tr|Q241V0|Q241V0_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 74
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915711|Adiantum capillus-veneris mRNA, clone:
YMU001_000074_H06.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q241V0|Q241V0_TETTH Putative uncharacterized protein OS=Tetra...    33   9.4  

>tr|Q241V0|Q241V0_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00629760 PE=4
           SV=1
          Length = 561

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = -2

Query: 325 GLFSILRSVKYNRHRFSQELGSSKRKKADDFVRVVGFRQHPQLSSILQMSAIDEKERKQI 146
           G + +L+ +KYN ++FSQ    S      D   ++ F+   Q  ++L    I+  + K  
Sbjct: 55  GQYQLLQYIKYNNNQFSQFFSHSSLFYRKDINLIIQFQVQNQQKAVLNTFDINLSQLKCQ 114

Query: 145 LAAGDVKQSAFVML 104
           LA  D+     V++
Sbjct: 115 LAVPDLSLDMIVII 128